Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                ------>MYB83                              ------>MYB46(1)                            --------->DEAR3(1)                            --------->AtMYB61 <------ZmHOX2a(1)       <---------ALFIN1 ---------RAV1(2)        --------->ANAC46 --->YAB1              --------->ANAC46                                                             - ->ANAC58              <---------ALFIN1                                               <-----------GT1 ->ANAC58     <---------CCA1(2)         <-----------GT1               --------->AHL20(2)           <-   tcaggaagttcaactcttatcttccacacacctccctcatatatacctgtccatagtacaaacacacagagataaaatcaccaaaaattaacaagttgat  23672300                                        --------->At4g35610                                      --------->YAB1                                      <---------ICU4                                             ----                                     <---------YAB1                                            <-----                                   --------->YAB1                                              ------                                   <---------ICU4                                              ------                                 <---------ARR11(3)                                            ------                                 --------->ARR11(3)                                            <-----                                --------->YAB1                                                <------                               <---------YAB1                --------->MYB52(1)         <---------ATHB51                               --------->ICU4          --------->ANAC58                 <---------AHL20(2)                             --------->YAB1<---------At4g35610                      --------->AHL20(2)                            <---------YAB1 --------->At4g35610       --------->YAB1 <---------AHL20(2) -------->YAB1              <---------ATHB12           ----------->GT1         <---------YAB1<------- --------ZAT6     --------->ANAC46<---------YAB1       --------->ANAC58<XXXXXXXXXXXXXXXXXXXXMIR407   actgataagttgaaattgacacaaaaccctatgatgatcatcatcagcagcaagaacaagaaaaaacagaatcaaaactctatgatttaaattattcacg  23672400                                                              --------->ATHB12                                                              <---------ICU4                                                              -------->ATHB1                            <---------WRKY38(1)              --------->ICU4                            <---------WRKY12                 <---------ATHB12                            --------->ZAT18                  <---------YAB1                           --------->TCP16(2)           --------->ANAC46 ------->HVH21            <---------TCP16(1)            --------->ANAC58 ----ANAC55(2)            <---------PCF5                --------->ANAC58 --->ANAC55(2)       <----------DOF2      ---------->DOF2 ------------>ATHB5 --->ANAC46   <-----------GT1 --------->At4g35610     <---------ANAC58 --->O2     <---------ANAC55(2)       <----------ID1  <---------AtLEC2 ----O2     --------->ANAC55(2)--------->ANAC46       <---------ANAC58     <---------ALFIN1      ---- ---LBD16   <---------ANAC58--------->ZAT14   --------->ARR11(3)       --------->At4g35610--------->YAB1 ----GT1    <---------ANAC58<---------ZAT14   <---------ARR11(3)  --------->YAB1 --------->REM1(2)---   ggacgaattgagttacttactgtctttgggtccactgaattcgacaaagaactcttgcatgccatcattgatcatctccaccttgtagtcactcatcatc  23672500                                                                      <---------ZAT2                                                                      <---------At4g35610                         --------->AHL20(2)                           --------->At4g35610                --------->YAB1                                        --------->GLK1(1)          ---- ----->TOE2(3)  <---------ICU4                               --------->AHL20(2)    --------->YAB1<--- --->ZmHOX2a(1)<---------ATHB12                     --------->TOE2(3) --------->ZAT2<---------KAN4(2)   ctaaactctcacatcaaatcatcacaaaaaaatcgaatcaaatcgccaaacaaacattagaaaaaaaatcggagctcaaaatcaagaataaactgataag  23672600             <---------ICU4            --------->AHL20(1)            --------->AHL20(2)            <---------AHL20(2)           <---------AHL20(2)           --------->AHL20(2)       --------->AHL20(2)                                ----------->ARR10                  <--------    ----------->GT1                                  <------NtERF2                     <---------YAB1   <---------TOE2(3)                               <---------DEAR3(1)               <-----------GT1   <---------YAB1      <-------TEIL              <---------ANAC58              <----------DOF2 ----->ARR11(3)  <---------At5g28300             <---------ANAC58         <------------------------ANAC81 ------ARR11(3) <-----------GT1                 <---------ZAT2  <------------------------ANAC81   ataataagattaaaaaaattacagtttcatcaaatccatttctctacgcttgctcggcgaagacatggtttctctcttcttctttttttctgattttttt  23672700                                                                                                 ----                                                                                                <----                                                                                                -----                                                         <---------ICU4                       -------                                              <-----------ARR10                              --------                                              --------->GLK1(2)                  --------->GLK1(1)                                              --------->ARR11(3)                --------->ARR11(3)                                              --------->ARR14(2)                <---------ARR11(3)  -                                              <---------ARR14(2)                --------->ARR14(2) <-                                              <---------ARR11(3)                <---------ARR14(2) --                      ----------->GT1        <---------GLK1(2)            <---------YAB1     <-------                     --------->ALFIN1        <---------ARR14(1)        --------->AHL20(2)  --------->YAB1           --------->LBD16       <---------ARR11(3)     --------->ICU4 --------->AHL20(1)  <XXXXXXXXX          <---------HSFB2a(2)    --------->ARR11(3)     <---------YAB1 <---------AHL20(2) <---------YAB1         <---------LBD16----------->GT1    *TSS       --------->YAB1   <---------AHL20(1) --------->ICU4 -AHL20(2)--------->HSFB2a(2)  <---------TOE2(3) <----------DOF2  <---------AHL20(2)    --------->YAB1   tttttttgtcttctgggaatcaagtggagaaataagataatgtgagagaatctttttcattattttgttttattttattacagatatcgatgatgatgat  23672800      --------->YAB1     --------->ICU4     <---------YAB1   --------->YAB1  --------->ICU4                                                                                    <  <---------YAB1                                                                                    - ----->YAB1 --------->YAB1                       <--------P                                         - -----YAB1 <---------YAB1                       --------->REM1(2)                                 --- ---->ICU4 --------->ICU4                      --------->ALFIN1                                  <--- -->YAB1 --------->YAB1                      <---------ANAC46                                    ---- ->ICU4 <---------YAB1                  <------------CBF                                        ----- -------->YAB1                         --------->ATHB12     ---------->DOF2                     ----- --------YAB1          <---------ARR11(3)    <---------ANAC58                                   <---- ------->ICU4 <---------YAB1           <---------ICU4    --------->YAB1              --------->At5g28300 --YAB1 --------->ICU4 --------->ARR11(3)    <---------ANAC55(1)                     --------->DOF5.7(2) XXXXXXXXXXXMIR414    <---------At4g35610    <---------ANAC58                       ----------->GT1 <   gatgatgatgatgatgatgatgtgagatgttccaagagaactcattgccgtgttggcaaaaataaagtttcaagttcaagtttcgacggtaacttaaatt  23672900         --------->RAP2.6(2)         ----------->RAV1(1)     --------->MYB59 -------->HAHB4 <--------ATHB1 --------->ATHB51 --------->ATHB12 --------->YAB1 <---------ICU4 <--------HAHB4 ---------ATHB51 -------->AHL20(2) -------->ICU4 ------>YAB1---------->DOF2                         <------ZmHOX2a(1) ------AHL20(2)                                  <---------LBD16                                   -- ----->AHL20(2)                       <---------ANAC46                                             <- ---->AHL20(2)                        <---------ANAC58--------->ANAC58                             -- ---->AHL20(1)                        <---------ANAC58--------->ANAC58                          <---- -----AHL20(2)         --------->ETT(2)          <-----------RAV1(2)                           <----- ---------YAB1         <---------ETT(2)    --------->CCA1(2)       <---------ATHB12            ------   taataattaggccacaaagaaaatgtagacatgaatactgtcgtgatatgctcaggaagctatttgcaaatcaaacaaaacccatcgaaacatttgagat  23673000                                                    --------->At5g28300                                        <---------ICU4  ------->TEIL                         --------->ICU4            --------->ANAC58  <-----------GT1             <---------YAB1       ----------->GT1 ------->ANAC55(2)         --------------->AGL15------------>AtMYB77 --------ANAC55(2)        <---------ANAC58      --------->MYB52(1) --------->AHL20(2) --------->GT1            <---------ANAC58   --------->ANAC46    --------->ANAC58 --ZmHOX2a(2)             <---------ANAC46 <-----------GT1       ----------->GT1 ----ARR11(3)         <----------DOF2  <---------MYB52(1) --------->ANAC46    <---------YAB1 --->ARR11(3)      <-----------GT1    <---------RAP2.6(3)---------->DOF2<-------TEIL   catgtaacttatcttatctataaacttttcttgtaatagccgttattacacaacggttacaaagcacaagtaaattcattttcattgttcttctccaatc  23673100                                                           <---------ARR11(3)                                                     --------->ANAC46                                                     --------->LBD16                                                    --------->LBD16                                                 ------>MYB83                                            <-----------GT1--------->ARR11(3)                                         <---------ANAC55(2)                                         --------->ANAC55(2)                                     <-----------HVH21 ---------->DOF2                                  <---------AtLEC2  <---------HSFB2a(2)                                  <---------ANAC46  --------->HSFB2a(2)                              <----------DOF2    ------>MYB46(1)                  <---------ANAC46<---------ANAC58 <---------LBD16  <----------DOF2                <-               <---------MYB52(1) <---------ANAC58<-----------------AGL1                         <---   tccacaaatactactccgttttgtatatatgtctttgcttgtcacataaccttccccgaaaggtcttgagctttgtttgttttaaaaaacaaaatagtag  23673200  Previous    Next  AGI:  At1g63800.1    Description:  UBC5 (UBIQUITIN-CONJUGATING ENZYME 5); ubiquitin-protein ligase. Identical to Ubiquitin-conjugating enzyme E2-21 kDa 2 (UBC5) [Arabidopsis Thaliana] (GB:P42749;GB:Q8VXY5;GB:Q9CAE2;GB:Q9CAJ4); similar to UBC4 (UBIQUITIN CONJUGATING ENZYME 4), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G41340.1); similar to Ubiquitin-conjugating enzyme E2-23 kDa, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47726.2); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating enzyme (InterPro:IPR015581); contains InterPro domain Ubiquitin-conjugating enzyme Range:  from: 23671279    to: 23672743    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g63810.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO22840.1); similar to Nrap protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95898.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN72980.1); contains InterPro domain Nrap protein (InterPro:IPR005554) Range:  from: 23673195    to: 23679561    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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