Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <---------ANAC58                <---------ANAC46                <---------ANAC58                <------NtERF2             <------NtERF2            <---------RAP2.3(1)            <---------DEAR3(2)            <---------ERF1            <---------RRTF1(1)            ------>NtERF2            <---------ATERF1(1)            <---------RAP2.6(1)            <---------DEAR4(2)            <---------ORA47(2)           <---------ATERF1(2)           --------->DEAR3(1)           --------->ATERF1(2)           <---------RAP2.3(2)           <---------RRTF1(2)           <---------RAP2.3(3)           <---------DEAR3(1)           --------->ALFIN1           <---------RRTF1(3)          --------->ATERF1(1)          --------->DREB2C(1)          <---------ABI4(1)          --------->RAP2.3(1)          <------NtERF2          --------->DEAR4(2)          --------->At4g35610          <---------At4g35610         <---------RRTF1(1)         <---------RAP2.6(1)         <---------ATERF1(1)         <---------ERF1         ------>NtERF2         <---------DEAR4(2)         <---------ORA47(2)         <---------RAP2.3(1)        <---------RAP2.3(3)        <---------RAP2.3(2)        <---------RRTF1(3)        <---------ANAC58        <---------RAP2.6(2)        <---------DREB2C(2)        <---------RRTF1(2)        <---------ANAC58        --------->ATERF1(2)        <---------ANAC46        <---------DEAR3(1)        <---------ATERF1(2)       <---------ABI4(1)       --------->ATERF1(1)       <------NtERF2      <---------ATERF1(1)     ----------->HVH21     <---------DEAR3(1)                     --------->ALFIN1     --------->ALFIN1                       <---------REM1(1)    --------->ATERF1(1)                   <------MYB83   <---------ZAT2                  --------->TOE1(2)   --------->ZAT2                 --------->ZAT2  --------->ALFIN1                <---------ZAT2  <---------AtMYB61               --------->O2  <---------DEAR3(1)              <---------TGA1a -------->LBD16------>NtERF2      <---------O2       ----------->GT1 --------HSFB2a(2)           --------->ANAC46        <------MYB46(1) ------->LBD16<---------ANAC46 ----------->HVH21     <------MYB83 -------HSFB2a(2)        --------->AtMYB61<------MYB46(1)                                          <- ------>HSFB2a(2)  --------->REM1(2)     <---------AtMYB61                               <---------ANAC58 -------LBD16--------->ATERF1(1) ------>NtERF2   --------->ATHB12------>ZmHOX2a(1)       <---------ANAC58   cccggaggtggcggcggcgcgtgaagaccactcgcgacctgggaaggtgtaagattggtaaaaactcctctctgaagatagaactgagaatgcgagcctg  23542500                                                                    <---------RVE1(1)                                                                    <---------CCA1(1)                                                                   --------->ARR11(3)                                                                   <---------ARR11(3)             ---------->ARF1        --------->TOE1(3)    <---------GLK1(2)      ----------->GT1         <---------ANAC58           --------->TOE2(3)  <---------TOE2(3) <---------------AGL15         <---------GLK1(2)    --------->AHL20(2)   <----------DOF2 <---------GLK1(2)  <---------DAG2         <---------ANAC58  ------->TEIL      <---------YAB1       <---------RVE1(1)   <----------DOF2 --------GLK1(1)        --------->AtLEC2   <-----------GT1--------->GLK1(2)  ---------->DOF2   gaaatgccatagcttctctcccatccatgcatttaaaaccctaaattacaattctttaagaatctaagagattttttaaaaaaggaaacttttttgaaga  23542600                                                                             --------->ANAC46                                                                       --------->AHL20(2)                                                                    <----------DOF2                      --------->YAB1                               <---------ANAC46                --------->LBD16                                   <------NtERF2               --------->HSFB2a(2)                               <---------ERF1             ------>MYB46(1)                                     <---------RAP2.3(1)             ------>MYB83                                        ------>NtERF2           --------->AtMYB61                                    <---------RAP2.3(2)           <---------ALFIN1                 ----------->GT1     <---------DEAR3(1)          --------->MYB46(3) --------->TOE1(3)                  <---------RAP2.6(2)         -------->P--------->GLK1(1)       --------->DAG2       <---------ANAC46              -------        <-----------GT1      --------->TOE2(3)   ---------->DOF2<---------RAP2.3(3)    ---------->DOF2   <---------AHL20(2) ----------->GT1   ---------->DOF2        --------->RAP2.6(3)    --------->YAB1   acaaatttatctaccacccagaaatcgtaaaccctaataacccaaagagtgaaaagaacaacaatggcggcttttatatacccagtaatcaaagtcgggt  23542700                    <------ZmHOX2a(2)                    --------->CCA1(2)                   --------->AGP1                   <---------ARR14(2)                   --------->ARR14(2)            <---------At4g35610            --------->At4g35610     --------->ZAT2--------->ARR11(3)                                   <---------ZAT18     <---------At4g35610                                                --------->ZAT18     <---------ZAT2<---------ARR11(3)         ---------->DOF2           --------->ZAT14      --------     --------->At4g35610                 --------->TOE1(2)--------->At4g35610              ---------- ---->GT1 <---------ZAT18          <---------YAB1   ---------->DOF2     <---------ZAT14---------->DOF2   tattttcagctgtgagcttaagatccaaactgtttttatgaaacctagaaaagaaaaagaagctaaatgttgagttcacttagaactcaaaaagaaagta  23542800                              --------->DAG2                             ---------->DOF2                         --------->ANAC58                                  <---------ARR14(2)                         xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           --------->ANAC58          -----      --------->ARR14(2) --------->ANAC46                           ---------->DOF2  *TSS---------->DOF2 --->GT1            <----------ID1                <---------At5g28300 --------->ANAC58 -------------- >DOF2<---------ARR14(2) --------->ANAC58     <---------ZAT6   <--------P <---------CCA1(2)   -------   aaattgcagatttgaaatgaagacaacaagcaaaagtagctactactactgttacagtctctctggtagagaaagcaaatctcagaaaaaaaaaaggaaa  23542900                                                             <---------AHL20(2)      <------------CBF                                                        <---------AHL20(2)         <---------AHL20(2)                                                        --------->AHL20(2)        ------------>CBF                                         <---------AHL20(2) --------->AHL20(2)--------->AHL20(1)    ---------->DOF2                      --------->AHL20(2) <---------AHL20(2)--------->ARR11(3) ------>GT1                            <-----------TBP<----------DOF2         <---------AHL20(1) ---------->ANAC81                <-----------GT1     --------->TOE2(3)    --------->AHL20(2) --->DOF2    ---------->DOF2 <------------CBF<-----------GT1<---------AHL20(1)<---------ARR11(3)   --   gaaaaaaaaagaagagaaaggaagtgaagaccattgtttctatttatatactatttctttaattaattttgtcaaaaaaaaatattcaattggtttacaa  23543000             <---------MYB46(3)           --------->CCA1(2)            <--------P                   --------->ARR11(3)           <-------GAMYB                <------ZmHOX2a(1)    <---------AHL20(2)            <---------AHL20(2)    <---------AHL20(1)           --------->AHL20(2)    --------->AHL20(2)          <---------YAB1    --------->AHL20(1)       <---------YAB1                             --------->GLK1(2)   <---------AHL20(2)        <---------AHL20(2)                         <---------ARR11(3)   --------->AHL20(2)    <---------AHL20(2)                       <-----------GT1 ------->AHL20(2)  <---------TOE2(3)---------->DOF2        ----------->GT1                <---------GLK1(1)   aaaaaataaattgggttgtttaagaattttttttattaaaaaggatatagactttcttcaatggtttataacaaaatctaatgtctcattagatttctga  23543100                                                                                                    -                                       --------->YAB1                                            ----                                       --------->AHL20(2)                                        <---                                    --------->TOE2(3)                                            <---                                  <-------TEIL                                                   ----                              <---------ARR11(3)                                                <----                              --------->AHL20(1)                                              <------                              --------->ARR11(3)                               <---------At4g35610 --                          <---------ARR14(2)       <----------DOF2      <---------ANAC58      <------                          --------->ARR14(2)      <---------ANAC58      <---------ANAC58--------->AHL20(2)                          <---------ARR11(3)      <---------ANAC58--------->YAB1     ================                         <------ZmHOX2a(1)   <---------AHL20(2)   <---------ICU4     ================                       <---------TOE1(3)    --------->AHL20(2)   --------->ICU4--------->At4g35610<--  ---------->DOF2      <---------TOE2(3)<---------TOE2(3)     --------->AHL20(2)     ------>ZmHOX2a(1)   ctgaaaaagaaatttaagtcaatttgaggatatatattcattaatatttaatgcttttcatgtataaattatgagcttgtcatcttcctataaattaagg  23543200          <---------ANAC46          <---------ANAC58          <---------ANAC58    <---------ARR11(3)    --------->ARR11(3)   <---------CCA1(2) ------>ZmHOX2a(1) -------->TOE2(3) ----->ARR14(2)                                                                ---------->DOF2 ------ARR14(2)                                                             --------->TOE1(3) ------ARR11(3)                                                           --------->GLK1(2) ----->ARR11(3)                                                           ------->TEIL --ZmHOX2a(1)                                                            --------->ARR11(3)      ---- ---TOE1(3)                                                          ---------->DOF2        <-------- ---->ZmHOX2a(2)                                                   <<<<<<<<<MYB98           --------- ---TOE2(3)                                   <------ZmHOX2a(1) --------->AHL20(1)          <-------- ====HOX2a_HOX2a                      ------>MYB83         --------------->AGL15            --------- =====HOX2a_HOX2a                     ------>MYB46(1)      <---------------AGL15    >>>>>>>>>>GT-3b - ----ZmHOX2a(2)<-------GAMYB        <---------MYB59        ==========================================   atcctaaatcttgtgtgtgttgaattacacattgtctaccaaataagaggaatcaagtttactaaatatgttaaagaacctgaaagaaaaatagtgaact  23543300                                                         <---------------AGL15                                                        ----------------->AGL2                                          ----------->GT1--------------->AGL15                                      ---------->DOF2   ----------------->AGL3                                    <---------YAB1  --------->ARR11(3) ------->GT1                      --------->YAB1 --------->AHL20(2) -ZAT18                          <------ZmHOX2a(2)  <---------ARR11(3)          <---------HSFB2a(1) >ZAT18                          ================================HOX2a_HOX2a    <---------HSFC1(2) -ZAT14     <---------ARR11(3)  <---------ARR11(3) --------->RVE1(1)      --------->ALFIN1     <----- >ZAT14     --------->ARR11(3)  --------->ARR11(3) --------->CCA1(1)  ---------->DOF2         ------- --------->DOF2              --------->YAB1----------->GT1------>ZmHOX2a(1)     --------->HSFB2a(1) =========================================================================MADS_MADS        --------->TOE2(3)   agtaaagaaaccaagttcttgatgaccacaatgagatcataaaagagttaaaaaaatctcctaaaatagcatgaaagtgggagggttctgttacattaac  23543400  Previous    Next  AGI:  At1g63470.1    Description:  DNA-binding family protein. similar to DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT1G63480.1); similar to DNA-binding protein PD1 [Pisum sativum] (GB:CAA67290.1); contains InterPro domain Protein of unknown function DUF296 (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding (InterPro:IPR000637) Range:  from: 23540184    to: 23542885    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g63480.1    Description:  DNA-binding family protein. similar to DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT1G63470.1); similar to DNA-binding PD1-like protein [Pisum sativum] (GB:CAA67291.1); contains InterPro domain Protein of unknown function DUF296 (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding (InterPro:IPR000637) Range:  from: 23543222    to: 23545802    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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