Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                  <-              <---------YAB1                                                                       <-            --------->ATHB12                                                       xxxxxxxxxxxxxxxxxx           <------ZmHOX2a(2)                                                      <xxxxxxxxxxxxxxxxxx           <---------YAB1                                                         xxxxxxxxxxxxxxxxxxx          --------->ARR11(3)                                                   --------->MYB46(3)  <-          <---------ARR11(3)                                                  --------->ANAC46   ----      --------->LBD16                                                         --------->ANAC58<------      ------>ZmHOX2a(1)                                                       --------->ANAC58<------     --------->TOE1(2)       --------->REM1(1)           <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ALFIN1  --------->ARR14(2)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <---------ALFIN1------>MYB46(1)  <---------ARR14(2)    <------MYB46(1)             <---------TOE1(3)     ------>ZmHOX2a(2) ------>MYB83  --------->GLK1(2)     <------MYB83                <---------TOE2(3)    <------ZmHOX2a(2) xxxxxxxxxx <---------GLK1(2)  <---------ANAC46            <----------DOF2         --------->ARR11(3)xxxxxxxxxxx ------>HSFB2a(2) <---------ANAC46        <---------ALFIN1              <---------ARR11(3)--------->AtMYB61   acagaatcctgagatcattgttgtgtaggttacaacattaggcttcactcctttaaggctgaggctacaaaatagatcccacccatcttccaccttccct  23492900     xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->AtLEC2 --------ANAC58 --------ANAC46 xx>smallRNA(fl3)      --------->AHL20(2) xxsmallRNA(si3)    --------->YAB1 x>smallRNA(se3)   <---------YAB1 --------ANAC58  --------->YAB1                                                               <------ -->NtERF2       <---------ICU4----------->GT1                  <---------ARR14(2)            <------ ---ANAC58      <---------ATHB12                                --------->ARR14(2)        <xxxxxxxxxx ---ANAC58    --------->WOX13(1)                               <----------TaMYB80    <----------DOF2 xxxxxxxxxx>smallRNA(fl3) <---------AHL20(2)            <----------DOF2        --------->AtMYB61 xxxxxxxxx>smallRNA(le3)<---------YAB1             <-----------GT1      --------->ARR14(2)<xxxxxxxxxx   gccttgcacatcccttcaatcataatattatatgtgtaaatataggttccattttactcttttgcatatacccgaataccaccaatgctttctctagctt  23493000                                                         <-----------HVH21                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                                     --------->bZIP60(2)                                                     --------->ANAC46                                                     --------->ANAC58                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                  <------NtERF2     <---------CCA1(2)          ------                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               <-----                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <--------     <-----------GT1                        <---------LBD16   <---------ARR14(2)            ---------  <---------ICU4     --------->YAB1     <---------ARR11(3)    --------->ARR14(2)   <---------ANAC58 ---ANAC58         --------->MYB52(1)   --------->ARR11(3)   --------->At4g35610   <---------ANAC58<x ---ANAC58      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ATERF1(1)   <----------DOF2     <xxxxxxxx xxxxxxxxxxsmallRNA(le3)              <---------YAB1 --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxsmallRNA(si3)<---------GLK1(2)<---------GLK1(1)<xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxx   cccatttttacagagtccatctaacagaatgttgtatgtcatgatatcgggaggcacgccatcagataccatctctttgaatatttcttgagccatatca  23493100                                                          <---------ARR14(2)                                                          ------>MYB83                                                          --------->ARR14(2)                                                        --------->AtMYB61                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       <---------ATHB12                                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       <---------MYB55(2)                                                       --------->MYB46(3)                                                      -------->P                                                      ------>MYB83                                                      --------->ANAC58                                                      ------>MYB46(1)                                                      --------->ANAC58                                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                              --------->ALFIN1                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                              xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                              <-----------RAV1(1)                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                         xxxxxxxxxxxxxxxx>smallRNA(s)                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        xxxxxxxxxxxxxxxx>smallRNA(s)                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                        xxxxxxxxxxxxxxxx>smallRNA(i)                                        ----------->HVH21 ------>MYB46(1)                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                     xxxxxxxxxxxxxxxx>smallRNA(s)                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  <---------ZAT6xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                  <---------REM1(1) xxxxxxxxxxxxxxxx>smallRNA(s)                               <---------AtMYB61xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------CCA1(2)                               --------->ALFIN1<xxxxxxxxxxxxxxxxxxsmallRNA(le3)            xxxxxxxxxx                               xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                         xxxxxxxxxxx                             xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          xxxxxxxxxxxx                             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              <---------LBD16      <---------ZAT2        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             <xxxxxxxxxxxxxxxxsmallRNA(s)      --------->ZAT2       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              <xxxxxxxxxxxxxxxxsmallRNA(i) --->YAB1                  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxx>smallRNA(i) ------GT1               xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <----------DOF2      --------->GLK1(1) -CCA1(2)                xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) >bZIP60(2)    <-----------GT1 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxsmallRNA(le3)  xx xxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ANAC46  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxx xxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------>ZmHOX2a(1)--------->LBD16     xx xxxxxxxxxxsmallRNA(l2)  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxx   caatctccagcttgaaataacccttggataagagtggtgtaagtgactgtgttgccaaccaatcctctttgagacatctcgcggaagagttccatacctt  23493200              xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                    --------->YAB1   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                       <---------ICU4   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                      --------->ICU4 xxxxxxxxxx>smallRNA(s2)                          <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->At4g35610 xxxxxxxxx>smallRNA(le3)                         --------------->AGL15     <---------ATHB12 xxxxxxxx>smallRNA(fl3)   <---------DAG2   --------->ANAC46           xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->YAB1               ------>ZmHOX2a(1) xxxxxxsmallRNA(le3)      <----------DOF2<---------YAB1            <---------ANAC58 xxxxxxxxxxxxxx>smallRNA(s)           <---------YAB1               <---------ANAC58              <--- xxxxxxxxxxxxxxxsmallRNA(se3)   XXXXXXXXXXXXXXXXXXXX>MIR400   xxxxxxxxxxxxxxxx>smallRNA(i)     ------   cgtctactctcttagccttacaaaatccctttataagagtattataagtcactacgtttgggaaacagtccttgctaatcatcaactcaaacatgtatta  23493300                                             ----------->GT1                                            --------->DAG2                                     ------>ZmHOX2a(1)                                     --------->LBD16                                    <---------LBD16                                   ----------->RAV1(2)                                     <-------GAMYB                                --------->HSFB2a(1)                                <---------TOE2(3)                                <---------HSFB2a(1)                              <-----------GT1    <---------DEAR3(1)        --------->ARR14(2)   --------->YAB1              <----------DOF2    --------->ANAC46          <---------GLK1(2)   --------->ICU4              --------->YAB1   <-----   <---------LBD16    <---------MYB52(1)  ---------->DOF2        ------>ZmHOX2a(1) <---------TOE1(3)  <---------ALFIN1  <---------MYB46(3)--------->LBD16     <------------AtMYB77<---------ICU4   <----- ------YAB1         <---------DEAR3(2)<---------LBD16    <---------At4g35610 <---------ATHB12  <----- --->YAB1     <---------GLK1(2)--------->ARR14(2) <---------ATHB12      ------>ZmHOX2a(1) <----------   tcatccacggcgaagagattgtctgttcgtcggaatctcctggggaaaggtaatcatccaactgctccttactccttcaatctttacggtttctgttgct  23493400                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                   <-                         <---------YAB1                                                           ---                         --------->ICU4                                                        <-----       <---------DAG2  ----------->GT1                         <---------ARR14(2)              <-----       <---------------AGL15                                   --------->ARR14(2)              <-----       <----------DOF2<---------AtMYB61                <-----------HVH21                       <-----      <-----------------AGL3                          <---------ZAT6                          <------ ----ANAC58           --------->ALFIN1             --------->DAG2                             <------ ----ANAC46     <--------P<---------MYB46(3)      ---------->DOF2                             ------- ----ANAC58  <---------HSFB2a(2)            <---------ANAC46  <------ZmHOX2a(1)           <---------MYB46(3) -RAV1(1)    --------->HSFB2a(2)      --------->ARR11(3) <-----------GT1  <---------At4g35610 -------   ggggacgagctttttctggtagcagtggtgattacagagagaacttgagtagaaaagtgttacaggatttgaagttagatgatgcaattggtttgttcgg  23493500             --------->ANAC58             <---------TGA1a             --------->TGA1a         <-----------HVH21        --------->ANAC58        --------->ANAC58      <---------WRKY38(1)     --------->WRKY18(1)    <-----------HVH21 ---------AtLEC2 ---------ANAC58 ---------ANAC46  ------>ZmHOX2a(1) ---------ANAC58  <----------DOF2 -----NtERF2 <---------O2 --->NtERF2  --------->ANAC58 -MYB46(1)   --------->O2------>MYB46(1) -MYB83 --------->O2     ------>MYB83                                                    <---------CCA1(2) ----ANAC58  --------->bZIP60(1)                                                     <-----------HVH21 ----ANAC58  <---------bZIP60(1)                                                  ------>ZmHOX2a(2) ---DEAR3(1) --------->ANAC55(2)                                                --------->ARR11(3) ---MYB46(3) <---------ANAC55(2)                                                <---------ARR11(3) -->MYB55(2) ================bZIP_DOF               <---------ANAC58     --------->DAG2  --------->At4g35610 -->MYB46(2) --------->bZIP60(2)                    <---------ANAC58    ---------->DOF2  <---------At4g35610   tggcatggtcaagtcacgtcctttaccttccatttttgagttcaataaactgttgagtgccattgctaagatgaaaaagtttgatcttgtcatctctcta  23493600                                                                                <---------CCA1(2)                                                                      ------>NtERF2                               --------->GLK1(2)       <<<<<<<<<<WRKY26<------NtERF2                           --------->ANAC46         <---------YAB1   --------->DEAR3(1)           <--                           --------->ANAC55(2)  <---------ARR11(3)   --------->At1g77200        <----                   <------ZmHOX2a(1)            --------->ARR11(3)  --------->DEAR3(2)      <--------                 --------->MYB59                <---------AHL20(1) <---------At4g35610     <---------ANAC58        <-------TEIL     <-----------GT1        --------->AHL20(1) --------->At4g35610     <---------ANAC58   ggtgagaagatgcagaggttaggaatttcacataatctatatacttacaatattttgatcaactgtttctgccgacgctctcaaatctctcttgctttag  23493700                                                                                              -------                                                                                       --------->GLK1(1)                                                                              --------->At5g28300<---                                                <----------DOF2             --------->ANAC58 <-------                                             --------->ANAC58               --------->ANAC58--------- -------------AGL15                          --------->ANAC58           <-----------HVH21   <-------- -----At4g35610   ------->TEIL             <-----------GT1         <---------ARR14(2)  <---------GLK1(1) --DOF2        <---------YAB1            <-----------HVH21         --------->ARR14(2)<------ZmHOX2a(1)   ctcttcttggcaagatgatgaaactcggctatgagcccagcattgtcacgctttcttctcttctcaatggatactgtcacggtaagaggatttcagatgc  23493800  Previous    Next  AGI:  At1g63320.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63080.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 23492549    to: 23493195    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g63330.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62590.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G62930.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63130.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 23493293    to: 23495184    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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