Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     <---------ARR11(3)                                   --------->ARR11(3)          --------->ANAC55(2)                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->AHL20(2)                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->AHL20(1)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <---------AHL20(1)    <x                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------AHL20(2)    <-                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) <---------ANAC58                    <-                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------ANAC46                   <xx                      <---------YAB1                           <---------ANAC58                 <xxxx                   --------->AHL20(1)        <---------YAB1    <---------ANAC55(1)             <xxxxx                   <---------AHL20(1)     <xxxxxxxxxxxxxxxxsmallRNA(i)      --------->AHL20(2)<------                   --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------ANAC55(2)          xxxxxxxxx    ----------->GT1<---------AHL20(2)------>ZmHOX2a(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<-   ----------->GT1--------->AHL20(2)<------ZmHOX2a(2)     <---------ICU4<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   tggtaagggtaaaattggaattttatttttgttgtgagatcgtgagtatgaaaataacaacaattacttgtttgtgtattaaattgcacggttttattac  23428600                  ------->GAMYB                 --------->MYB46(3)            ------>MYB46(1)       <-----------GT1        <---------ANAC58 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------ANAC58 -------->P    <---------ANAC58                                                <------ --------ANAC46 ------>MYB46(1)                                                               ------- xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                 --------->ICU4                        xxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxsmallRNA(s2)                --------->YAB1                   <---------------AGL15 xxxxxxxxxxxxxxxxxxsmallRNA(se3)    <-----------GT1<---------ICU4                --------------->AGL15 -----GT1   ------>MYB83   xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              <---------MYB46(3)<------ xxxxxxxxxxxxxx>smallRNA(l2)  <---------ANAC46 --------->AHL20(2)           --------->MYB52(2)<------ --------ANAC58 ------>MYB83 --------->MYB59<xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ----------------->AGL2   ttcgtgtatttaccttccaaccaaaaacaattgggtattaaacgtccaaataaaaattagttgagtttttttttgggtttgttccctaaatagatgtcgt  23428700         <---------AHL20(2)         <---------ICU4      --------->YAB1     <---------YAB1 ---ANAC58                                                    --------->LBD16 ---->GT1--------->AHL20(2)                                 <---------LBD16 xxxxxxxxx>smallRNA(le3)                           <---------TOE2(3)        <---------ICU4 ---ANAC58                <-----------GT1    <---------AHL20(2)         --------->AHL20(2)   <------- ---ANAC46        --------->AHL20(2)         --------->AHL20(2)<---------MYB52(1)<---------YAB1   ataaactataattttttcgattaaaaattttcaatttggatttgagtttaatttagatttattccggttttcgattaaaaattatgcttaaaatttttcg  23428800                                                                              <---------MYB52(1)                                                                             --------->TOE1(3)                                                                             --------->TOE2(3)                                                                          ------>MYB83                                   <---------AHL20(1)                     ------>MYB46(1)                                   --------->AHL20(2)              <---------ANAC58                                   --------->AHL20(1)              <---------ANAC58                    --------->At4g35610                  <------MYB46(1)<---------MYB55(2)              <-----------GT1      <---------AHL20(2)    <------MYB83<-----------GT1          --------->AHL20(2)      --------->AHL20(2)    --------->MYB59 --------->MYB46(3) ----GT1  <---------AHL20(2)---------->DOF2             <---------AtMYB61<---------ALFIN1        <---   aatttttgttaattttttactcagttggacaaaagaataaatttcggtttaatatggtttggttcagtttcttacccacccttaatttgaatcaagttag  23428900                                                                                                -----                                                                                            <--------                                                                                       <---------ICU4                                                                                      <-------TEIL<--                                                                                  <---------AHL20(2)                                          --------------->AtSPL8                  --------->AHL20(2)     <-----------GT1                 <---------ANAC55(2)                         --------->AHL20(2) ------ZAT6---------->DOF2      <---------ICU4--------->ZAT18 <--------P  <------ZmHOX2a(1)----------   tgtaagtttaccatatagccactgaaaaaactgaatattacatatatgtcccctaatttctctggttgtcatttgaggagacattaaattcattacaatt  23429000                                   --------->LBD16 ---->YAB1                  <---------ANAC55(2) -YAB1                      --------->ANAC55(2)  --------->YAB1                                     - -------YAB1     *TSS  --------->YAB1--------->ARR14(2)          <----------DOF2                    - -->CBF    <-------TEIL<---------ICU4<---------ARR14(2)    <----------DOF2         ------------------   ttgattttttatattcatttttcaaacatcacgtttcccgatttgtccgactcatcatcttctttctctttctgtctctctctctctctgttcgaatcga  23429100                                                      ---------->DOF2                                                   <---------ANAC58                                                   <---------ANAC58        --------->ARR14(2)                         <---------ANAC46        <---------ARR14(2)                   <---------AHL20(2)       <---------GLK1(1)                    --------->AHL20(2)    >>>>>>>>>MYB98                          --------->AHL20(1) -------->TOE1(3)                           <---------AHL20(2) -------->TOE2(3)                           <---------AHL20(1) --->WRI1   --------->LBD16             <---------ALFIN1     --------->REM1(1)         <---------DAG2   aaccctaacaaatccgaaattgtctctgagattgaaattgccccaatttaatggcgtaaagcttcaccaatttcatcaattcgatatcaatttttgaaat  23429200                                                                                             <------ZmHOX2a(1)                                                                                          <------ZmHOX2a(1)                                                                                          ===========                                                                                          ===========                                                                                        --------->ALFIN1                                                                                       ==============                                                                                       <------ZmHOX2a(1)                                                                                --------->MYB52(1)  -                                                               --------->ANAC58------->GAMYB ========                                                              >>>>>>>>>MYB2    ----------->HVH21    <                             ----------->GT1              --------->ANAC58    --------->DEAR3(2)   --                             --------->ANAC58             --------->ANAC58    --------->MYB46(3)   <-                             --------->ANAC58       ------>NtERF2  <----------DOF2     ==============                           ---------->DOF2         --------->DEAR3(1)       <-----------GT1  ========    ---------->DOF2  ---------->DOF2          --------->CCA1(2)--------->ANAC58--------->DEAR3(1)<---   ttcgaagaaaggaagaaactttgaaaagagaaagcaaaatgtcaagagagacgacgacggaagcaacgcctttgattttaaccgacggaggaggaggaag  23429300        <---------At4g35610        --------->At4g35610  ------>ZmHOX2a(2) <------ZmHOX2a(2) ========HOX2a_HOX2a =======HOX2a_HOX2a ========HOX2a_HOX2a                                                <---------YAB1 -------->ARR14(2)                                       <---------ANAC58 =======HOX2a_HOX2a                ----------->GT1       <---------ANAC58                           < ---------ARR14(2)              --------->DEAR3(1)       <---------ANAC46                           - ------->GLK1(1)                <---------ANAC46        <---------LBD16<---------YAB1               - --------GLK1(1)               <------NtERF2           --------->MYB52(1)                           < =======HOX2a_HOX2a          <---------DEAR3(1) --------->ANAC58    --------->ICU4      <---------ANAC46 ========HOX2a_HOX2a        --------->At4g35610 --------->ANAC58  --------->YAB1        <---------ANAC58 ---ZmHOX2a(1)           ---------->DOF2        --------->AtLEC2 --------->ICU4         <---------ANAC58   gagatcggtgagaagacaagggttaagagaagcggcgaggttactaagacatgcaagtagcgggagaatgatgatgagagagccatcgatgcttgttcgt  23429400           --------->At4g35610           <---------At4g35610       <----------CDC5      <---------At4g35610      <---------ZAT2      --------->At4g35610     ------>NtERF2                                                                    <----------DOF2    <---------RAP2.3(2)                                                              <---------ANAC58    <---------ANAC46                                                            --------->HSFB2a(1)    <---------RAP2.6(2)                                                         <---------HSFB2a(1)    <---------DEAR3(1)                                                   <---------MYB52(1)   <---------LBD16                                                     <---------ANAC46      <-------GAMYB ---------At4g35610                                                    <---------ANAC58    ---------- -------->At4g35610     <----------ID1   <----------DOF2               <---------ANAC58  <-----------RAV1(1) -------->ZAT2--------->At4g35610--------->ATHB12                   <---------GLK1(1)<---------ANAC58 ---------ZAT2--------->ZAT2---------->DOF2               <---------AtMYB61   <---------GLK1(2)<-----   gaagctgcggctgagcagcttgaagagagacaaagcgattgggcttattcgaaacctgtagtggttttggatttcgtttggaatcttgcttttgtcgttg  23429500  Previous    Next  AGI:  At1g63170.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to E3 ubiquitin-protein ligase At1g63170 [Arabidopsis Thaliana] (GB:Q8LDB8;GB:Q93Z65;GB:Q9CAM6); similar to protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G12760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63689.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 23429017    to: 23430976    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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