Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    ----------->GT1                          <---------AHL20(2)                <---------ANAC46                           --------->AHL20(2)     <---------AHL20(2)        <---------MYB46(3)                          --------->ANAC55(2)        <---------AHL20(2)       --------->ALFIN1--------->YAB1         <---------AHL20(2)              --------->AHL20(2) >LBD16<---------AtMYB61   --------->GLK1(2) <---------AHL20(2)          ----------->GT1      -------   ctatatagagtggttgtaatgtgtaaaataatctgtgtattgttttttttatttatgtgatttaaacaaatagcatggtattatataaaaaacaatgtgt  23422700                 ====================================HOX2a_HOX2a                <---------YAB1                                <-----------GT1       ------>MYB83                                    <---------ZAT14       ------>MYB46(1)                                 --------->ZAT14     <---------MYB59                                 <---------At4g35610    ----------------->AGL1      <---------ARR11(3)   --------->At4g35610    ----------------->AG        --------->ARR11(3)<---------MYB52(1)   <-----------------AG     ---------->DOF2      <-----------HVH21  <-----------GT1<------ZmHOX2a(1)              --------->WOX13(1)                             ------ -->ALFIN1 <---------MYB46(3)  --------->YAB1 <------ZmHOX2a(2)                                <-----   tgatataccaaattggttaggattaagcttcaaagataatgcattgagatcagtcagttcagtttttcaagactagttgtatatggaaacagaagtagag  23422800                                                  --------->ARR14(2)                                                  <---------ARR14(2)                                                 <---------GLK1(1)                                             ----------->GT1                                ---------      ------->GAMYB                        <---------ANAC58                             <------ZmHOX2a(2)     --------->MYB46(3)             <---------CCA1(2) --------->LBD16                  --------->ARR11(3)   --------->MYB52(1)             <---------CCA1(2) <---------LBD16------->TEIL<---------YAB1       - ----->GT1            <-----------GT1      <---------ANAC46      --------->ZAT14  <---------WOX13(1)< ----ZAT6          --------->AHL20(2)      <---------ANAC58      <---------ZAT14--------->ATHB12    <   taaaataacagccatcaccaattttttccacaattcttatctcttgcttgtaaatccggtttgagactgtacttagtactactgattgagatcaatgcaa  23422900                              --------->ICU4                         <------MYB83                                         --------->REM1(2)                         ----------->GT1                       <---------ARR14(2)                         <------MYB46(1)                      <---------CCA1(2)                         --------->ANAC55(2)                  <---------GLK1(1)                         <---------ANAC55(2)                <---------AtLEC2  --------->ZAT14                        --------->MYB46(2)             <---------MYB52(1)     <---------ZAT14                        --------->MYB111(1)        ------>NtERF2             --------->ALFIN1                        --------->MYB59            --------->MYB52(1)       --------->LBD16                       <---------MYB55(1)         <---------ALFIN1         <---------ANAC46 >AtLEC2        <-----------GT1<---------ICU4  --------->ANAC58--------->ARR11(3)                ---- -------->ARR11(3)    <--------P               --------->ANAC58<---------ARR11(3)               <---- ---------GLK1(2)     <---------MYB52(1)     --------->ARR14(2)--------->ARR14(2)               ----- ---------ARR11(3)   <-----------HVH21       <---------ARR14(2)<-----------ARR10            ---------   aagattttctcacaaaataaaccggttaggtaataagttctaaaccagaaccccaccggtttgcatatctcatccctccgtgtagggttttgcgatttcc  23423000                                             --------->ANAC58                                             --------->ANAC58                                        ----------->RAV1(2)                        ------>NtERF2                                        --------->ZAT2                            <---------RAP2.6(2)                                        <---------ZAT2                           --------->RAP2.6(3)                                        <---------At4g35610                    ----------->HVH21                                 ------>ZmHOX2a(1)                             --------->WRKY12 ----->LBD16                   ----------->RAV1(2)                            <---------WOX13(1) -----HSFB2a(2)                --------->At4g35610                   <------ZmHOX2a(2) ---->HSFB2a(2)      <------------CBF   --------->At4g35610   <-------TEIL  --------->ATHB12      <-- >GLK1(1)          <---------TOE2(3)  <-----------RAV1(2)    *TSS  --------->GLK1(1)        <--------   agagagagagagagtgagactgagattgaagtctcctgaatcagctgaagccaaatcgataagatgcagagatcgatttcattgacggccaaaagattgt  23423100                                                                         <---------ANAC58                                                                         <---------ANAC58                                                                         <---------ANAC46                                                                        <---------ZAT2                                                                       <---------MYB46(3)                                                                     <---------MYB52(1)                                                                     <-------GAMYB                       <------MYB46(1)                              --------->LBD16                       --------->ANAC55(2)                         <---------ANAC46           <------                       <------MYB83                               <---------LBD16    <----------DOF2                       <---------ANAC55(2)                      <---------ARR14(2)  ------>ZmHOX2a(2)                      --------->MYB59                           --------->ARR14(2) <------ZmHOX2a(2)                    <---------ARR14(2)                        <---------MYB46(3)  --------->ARR11(3)               --------->LBD16                               <---------ANAC58     <---------ARR11(3)              <-----------RAV1(2)                           <---------LBD16     --------->HSFB2a(1)        <---------GLK1(2)                                <----------DOF2--------->ZAT2    <---------ANAC58  --------->ATHB12  --------->ARR14(2)        <----------DOF2<---------ANAC58  <---------KAN4(2) -------MYB46(3)--------->LBD16     <------------AtMYB77<---------ICU4<--------P<---------HSFB2a(1) < -GLK1(2)     <---------LBD16  ------>ZmHOX2a(1)       <---------ATHB12--------->MYB55(2) <---------ANAC58   ttgttcattggaatctccaggggataggtaatcctccaactgttccttctttcttcaatctttgcggttccggttgctgggaacgatcttttgctagtgc  23423200                                                                           ----------->HVH21                                                                         <------MYB46(1)                                                                         ----------->GT1                                                                         <---------ANAC58                                                                         <------MYB83                                                    <---------At4g35610  <---------ANAC58                                                   <-------TEIL         <---------DEAR3(1)                                                  <--------P          <---------MYB52(1)    <---------MYB46(3)                         <---------TOE1(3)   ------>ZmHOX2a(2)<---------WRKY38(1)   <---------YAB1                              <---------TOE2(3) <---------AGP1    --------->WRKY18(1)   --------->ICU4                           <---------YAB1    <--------P<---------MYB46(3) ----------->GT1                         --------->ICU4      <-------GAMYB<-----------HVH21 ---ZAT6        <---------ARR11(3)       <---------AHL20(2) <---------MYB46(3)    <-----------HVH21 ---------ZAT6  --------->ARR11(3)       <---------YAB1    <---------RAP2.6(2)<---------bZIP60(2)   tagtggtgattacagagagatattgagaaataggctaagtgatattattaaggtagatgatgcggttgatctgttcggtgacatggtcaagtctcgtcca  23423300                                     <---------MYB52(1)                                    <-------GAMYB                                  <---------At4g35610                                   <---------bZIP60(2)                             --------->At4g35610                                   <---------ANAC58                             <---------At4g35610                                   <---------ANAC46                         <------NtERF2                                   <---------ANAC58                       <---------DEAR3(1)                                 <---------ZAT18                   --------->At4g35610                                 --------->ZAT18                   <---------CCA1(2)                              <---------ANAC58                     <---------At4g35610<-------TEIL   >>>>>>>>>>>>>>>>>LFY       <---------ANAC58                 <-----------HVH21<---------ZAT2   tttccttccattgttgaattcaataaactgttgagtgccgttgctaagatgaacaagtttgaacttgtcatctctctcggcgagcagatgcaaactttgg  23423400                                                          --------->At4g35610            <----------DOF2                      <------NtERF2           ------>ZmHOX2a(2)                    ------>NtERF2         <----------DOF2           <---------ICU4                      --------->DEAR3(1)    <---------ANAC58         <---------ARR11(3)              <----------DOF2  <---------ZAT2        <---------ANAC58         --------->ARR11(3)         --------->At4g35610   --------->ZAT2  <---------At4g35610<-------     --------->ANAC55(2)  --------->ARR14(2)  --------->DEAR3(2)     <---------ANAC58  --------->ICU4   <-----------GT1   <-------TEIL   <---------At4g35610   <---------At4g35610   <---------ANAC58-----   gaatttcacatgatctttacacatacagtattttcatcaactgcttttgccgacgctctcagctctctcttgctttagctgttcttgccaagatgatgaa  23423500                                                                                      <--------P                                                                                      <---------WOX13(1)                                                                            --------->LBD16                                                                           <---------ANAC58                                                                           <---------ANAC46                                                                           <---------ANAC58                          <----------DOF2                             <---------At4g35610                       --------->ANAC58                               --------->At4g35610                       --------->ANAC58                          --------->GLK1(1)   <-------GAMYB                     <-----------GT1              <-----------HVH21  <-----------RAV1(1)                   <-----------HVH21<---------At4g35610          <---------GLK1(1)  <---------MYB46(3) --YAB1       <---------ARR14(2)    --------->At4g35610         <---------ARR14(2) <---------AtMYB61 -->TEIL      --------->ARR14(2) <---------At4g35610           <------ZmHOX2a(1) <----------DOF2   actcggctatgagcccgatattgtcacgctttcttcgctgctcaatggctactgtcacagtaagaggatttctgatgccgtagctttggttgatcaaatg  23423600  Previous    Next  AGI:  At1g63140.1    Description:  O-methyltransferase, putative. similar to O-methyltransferase family 2 protein [Arabidopsis thaliana] (TAIR:AT1G77520.1); similar to putative caffeic acid methyltransferase [Gossypium raimondii] (GB:ABO41834.1); contains InterPro domain Plant methyltransferase dimerisation; (InterPro:IPR012967); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain O-methyltransferase, family 2; (InterPro:IPR001077) Range:  from: 23421159    to: 23422672    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g63150.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62590.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63130.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 23423061    to: 23425244    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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