Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   ----------->GT1                                                         <------NtERF2                                                        ------>NtERF2--------->WOX13(1)                                                        --------->RAP2.6(2)                                                        ----------->RAV1(1)                                                       --------->ATERF1(2)                                                       <---------ATERF1(2)                                                       <---------DEAR3(1)                                                      --------->At4g35610                                                      --------->RAP2.3(1)                                                      <------NtERF2<---------MYB52(1)                                                      --------->ATERF1(1)                                                     <---------ATERF1(1)    <---------AHL20(2)                                                     <---------RAP2.3(1)   --------->YAB1                                 --------->ANAC58    <---------DEAR4(2)   <---------YAB1 --TCP20                         --------->ANAC58   <---------DEAR3(1)  --------->YAB1           <--- ->PCF2  --------->YAB1        ---------->DOF2     --------->At4g35610  <---------ICU4           <--- --PCF2 <-------TEIL    <---------ICU4             <---------At4g35610 <---------ATHB12       -------   atagccaagtttcatcatcttgccaagaattgctaaagcaaatgagagttgagagcggcggcataaacagttaatcataatattgtaagtatagagatta  23394100                                     ----------->HVH21                                   --------->At4g35610                                   <---------At4g35610                             --------->LBD16                            --------->ANAC46                            --------->LBD16                                           --------->ZAT14                           --------->HSFB2a(2)                                        <---------ZAT18            <---------ARR11(3)   <------ZmHOX2a(1)                                    <---------ZAT14        ------>ZmHOX2a(1)  <---------HSFB2a(2)                                    <-----------GT1 ------ANAC46              --------->LBD16   <------ZmHOX2a(2)          --------->ANAC46 ------ANAC55(2)          <---------LBD16   <---------ARR11(3)          --------->ANAC58 -->GLK1(2) --------->ARR11(3)   ===================HOX2a_HOX2a         --------->ANAC58    <<<<<<<<<   tgtgaaactcctaaaatctccatcttctccccgaaggagatgacaagatcgaacttcttcatcttagcaatagcactcaacaatttactgaactcaacaa  23394200                                ------>MYB46(1)                                --------->MYB52(1)                                ------>MYB83                              --------->MYB46(3)                             --------->ANAC46     --------->At4g35610                  --------->WRKY38(1)             <---------At4g35610           --------->ANAC46                  ----------->HVH21            <-------TEIL                <-----------ARR10                --------->CCA1(2)     <------ZmHOX2a(2)                   --------->GLK1(1)      --------->DAG2       <-----------GT1  --------->At4g35610       --------->ANAC58    ---------->DOF2<-----------GT1   --------->AGP1                   --------->ANAC58 <<<<<<<<LFY ----------->ARR10--------->DEAR3(1)--------->REM1(1)   --------->MYB52(1)        -------   tggaaggaaaggggcgagatttgaccatttcaccgaacagatcaacagcttcatctaacttcaaatggagtaacgcatttctactcaatttctctctgta  23394300                                                              --------->At4g35610                                                              <---------At4g35610                                                            <-----------RAV1(2)                                                           ------>ZmHOX2a(1)  --------->YAB1                                      <----------DOF2  <---------ICU4                                    --------->HSFC1(2)                           ---- <---------YAB1                                     <---------HSFC1(2)                           ---- -->ZAT14                                          --------->GLK1(2)          --------->ANAC46<------   gccatcataactcaaaccagagaaatagatacctcgaaggcaaaacgatggagaagctttcctcaggtgaacaaatctcttcgccaaactcatcttcttt  23394400                                                                                             --------                           <------------MYB.PH3(2)                                     ----------->HVH21                         <-----------GT1                                        ------>ZmHOX2a(2)                     <----------DOF2                                           <------ZmHOX2a(2)                  --------->ARR14(2)                            --------->TOE1(3)*TSS  --------->WRKY12                  <---------AGP1                               ----------->RAV1(2)   <----------DOF2                  --------->ARR11(3)                      <---------ANAC58    --------->ARR14(3)    -    <---------YAB1<---------ARR11(3)                      <---------ANAC58    <---------ARR11(3)   <-  --------->YAB1  <---------ARR14(2)                   <---------MYB52(1)     --------->ARR11(3)   -- ------------->AG<---------CCA1(2)                    <-------GAMYB          --------->GLK1(1)    --- ------------->AGL1 ------>ZmHOX2a(2)                <---------MYB46(3)      <---------GLK1(1)    <-- ----DOF2     <---------LBD16                        <---------DEAR3(1)    xxxxxxxxxxxxxxxx>smallRNA(i)   ccaattgtgatacttctctggatcttttaacaaactctaaaatgaacacagttcgtcgttgcttaacctgaagatggagagatctcgctttgacggtcaa  23394500                               ------>MYB46(1)                               --------->MYB52(1)                               ------>MYB83                               -------->P                              --------->MYB55(1)                                                -----                             --------->DEAR3(1)                                              --------          <---------ICU4     ------->GAMYB                              <------MYB46(1)     ---------         <---------YAB1      ----------->HVH21                          <------MYB83        --------- ->WRKY18(1)                --------->DEAR3(2)                 <---------SPL7               <-------- -------->ARR11(3)          --------->MYB46(3)<---------WOX13(1) --------->SPL7             --------- --------GLK1(1)          --------->MYB52(1) <------------CBF  <---------MYB52(1)           <-------- ------->GLK1(1)          <-----------GT1   --------->ATHB12  --------->LBD16               --------- ------>ARR11(3)       --------->YAB1--------->ZAT14         --------->ANAC46               <-------- -------ARR11(3)     --------->AHL20(2)    <---------YAB1   <---------LBD16                --------->MYB59   gatatcatcttatcatttccagttttaataaccgaccggtttactctgattgagttctcttctccggtacgatttggttttattttgtttagttacgtca  23394600   <---------ANAC46   <---------ANAC58   <---------ANAC58 ----->DOF2                                                                                        <- ->TOE2(3)                                                                                         -- >ANAC58                                                                                  <---------ANAC58 >ANAC55(2)                                                                               <---------ANAC46 -ANAC46                             <---------TOE2(3)                                    <---------ANAC58 >bZIP60(1)                        --------->YAB1<---------ICU4          <---------MYB52(1)    <----- -bZIP60(1)                       <---------MYB52(2)       ----------->GT1         <---------At5g28300 >ANAC58             --------->At4g35610        <---------YAB1        <---------LBD16  <---------MYB52(1) -ANAC55(2)          <---------At4g35610       <-----------GT1  <-----------GT1   <-----------GT1----   aagtgtcttgaataggtttactcagcacaaactgcaattaacatatgtttatcatttcaagtggtttatctctccggtctgtattaaccgttgcgtttca  23394700                                                                                                 ----                                                                                                 ====                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 <---    --------->ANAC58                                                                            -----    --------->ANAC58                                                                           ------    --------->ANAC46       ----------->GT1                                                    ------- --------ZAT14         <---------AHL20(2)                                --------->WRKY12    <------- ------->ZAT14    ----------->GT1             --------->YAB1             ----------->HVH21   <------- ------GT1        ------->GAMYB            <----------DOF2   ---------->DOF2          --------->AHL20(2) ----->ANAC46  ----------->RAV1(1)    <---------ARR11(3)  --------->TOE2(3)  <---------MYB59 --------   cttcacacacaaacctccaacagaaaaaattgtaactcaagaactctttaataacttcaaacttaaagtttacatttgacctaaacaataaaacaacaac  23394800    ----------->GT1  --------->ICU4 ----->TOE1(3) =============================================================================MADS_MADS --->GAMYB ----------->AGL15 ----->TOE2(3) ------------AGL15           --------->ZAT6                         --------->DAG2 ------------>AGL2    <-----------GT1                      --------->GLK1(2) -->P     <-----------GT1<----------DOF2              ---------->DOF2----------->GT1 >GAMYB<---------ICU4---------->ID1           <-----------GT1 --------------->AGL15 --MYB111(2)     <----------DOF2              <---------At5g28300 ---------->DOF2 --MYB55(2)      <---------DAG2              <-----------GT1  <---------------AGL15<----------DOF2 ->MYB46(3)<---------At5g28300           <---------YAB1   <---------GLK1(2)  <-----------GT1   cctaattagtaattaccctctttttctctttacactgagttttctaattaccccctcaaagattctacaaaaggttttaaaaccactttaaaaaaaaaaa  23394900                                                                                               <-----                                   <---------MYB52(1)                                          <-----                                  --------->LBD16                                  --------->ANAC46                            <---------ALFIN1                                       --------->ANAC58                        --------->ANAC46                                          <-------TEIL ------                      --------->REM1(1)                                          --------->CCA1(2)            --------->TOE2(3)   <---------LBD16               <---------MYB52(1)--------->ARR14(2)         <-----------GT1--------->ANAC58                  -------->P      <---------ZAT2       ------        <-----------GT1 --------->ANAC58                  --------->MYB52(1)    <---------ARR14(2)  <---------DAG2      <---------ALFIN1                  --------->MYB46(3)--------->ZAT2      <------  <----------DOF2    --------->ZAT14            --------->ARR14(2)------>ZmHOX2a(1)--------->ANAC58   acagcttttttaaacctctaaactacacccaaactccggtttgcaacttaaatctgcatcaaccggtccttacacgagctcggatacacaactacagaat  23395000  Previous    Next  AGI:  At1g63080.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62670.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G62930.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63130.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 23391296    to: 23394481    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g63090.1    Description:  ATPP2-A11 (Phloem protein 2-A11); carbohydrate binding. Identical to F-box protein PP2-A11 (PP2A11) [Arabidopsis Thaliana] (GB:Q9CAN4;GB:Q84WN6); similar to ATPP2-A12 (PHLOEM PROTEIN 2-A12), carbohydrate binding [Arabidopsis thaliana] (TAIR:AT1G12710.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63669.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 23394728    to: 23396516    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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