Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             ----------->HVH21                                                          --------->LBD16                                                          <-----------HVH21                                                         --------->ANAC55(2)                                               <---------ARR14(2)                                              --------->GLK1(1)                                              <----------TaMYB80                                  ----------->RAV1(1)    <---------O2                               --------->ANAC58--------->ARR11(3)                               --------->ANAC46--------->ARR14(2)                               --------->ANAC58<---------ARR11(3)                             ---------->DOF2  <---------GLK1(1)                            ------->GAMYB<---------LBD16 --------->ANAC46                           --------->MYB46(3)<---------ARR14(2)  --------->GLK1(1)       -------->P--------->MYB46(3)   <---------ANAC55(2)  <---------GLK1(1)      --------->WOX13(1)  ---------->TaMYB80                          --------->At5g28300 ------P          ----------->RAV1(2)------->GAMYB       --------->O2                   ----------->GT1 ---ANAC46        ============================RAV  ------>ZmHOX2a(1)                   --------->LBD16 -ARR14(2)      --------->AtMYB61 --------->MYB52(1)    <---------LBD16               <---------ANAC46 >ARR14(2)   <-----------GT1--------->AtMYB61--------->ARR14(2)                     <---------ZAT14   gttgatatcccatttccaccatctgatcaaccaaagcaacagcctcggatatcctattcccgtgacagaaaccattgagaagcgagttcagggtaacaat  23390400                                                                  <------NtERF2                                                                  --------->At4g35610                                                                  <---------At4g35610                                          --------->ANAC58       ------>NtERF2  <---------PCF2                          --------->ANAC58       <---------DEAR3(2)                 -  --------->PCF2  --------->YAB1        ---------->DOF2         <---------DEAR3(1)          ------->TEIL  <---------TCP20<-------TEIL    <---------ICU4                 <---------At1g77200  <---------ARR14(2)   gctgggcccatagccaagtttcatcatcttgccaagaattgctaaagcaagtgagagttgagagcgtcggcagaaatagttgatgaaaatactgtatgtg  23390500                 <---------------AGL15      --------->CCA1(2)                 --------------->AGL15      --------->At4g35610                ----------------->AGL3------>NtERF2      ----------->GT1          --------->At4g35610                                             <-----      <---------ANAC46         --------->ZAT2 ----------->HVH21                                ------      <---------ANAC55(2)   <---------At4g35610       <------ZmHOX2a(2)                        <-----  --------->ARR11(3)        --------->At4g35610      <---------ARR11(3)                    <---------  <---------GLK1(2)        ------->TEIL     <---------At4g35610                  --------->ANAC58 -------->ICU4  ----------------->AG --------->DEAR3(1)                          --------->ANAC58   taaagattatgtgaaattcccaaattttgcatctgctcgccgagagagatgacaagatcgaacttgttcatcttagcaatggcactcaacaatttactga  23390600                                           --------->MYB46(3)                                         ------>MYB83                                         ------>MYB46(1)                                       --------->DEAR3(1)                                       --------->MYB46(3)                                      --------->ANAC58                                      --------->ANAC58                            <----------DOF2                                    <-----------GT1                               <---------DAG2                                   ----------->HVH21                        ----------->HVH21   --------->MYB46(3)             <-----------HVH21                       ----------->GT1 ----ZAT14                       --------->bZIP60(2)                      ------>ZmHOX2a(1) --->ZAT14                  <---------WRKY18(1)            --------->At4g35610 --------->ZAT6 ----ZAT18                 --------->WRKY38(1)    ------>MYB46(1)     --------->ARR14(2)       <----- --GT1                     ----------->HVH21      ------>MYB83        <---------ARR14(2) --------->ANAC46   actcaacaatcgaaggaaatggacgagacttgaccatgtcaccgaacaaaccaatcgcatcatctaacttcaaatcctgtaacacttttctactcaagtt  23390700                                   --------->KAN4(2)                                  <---------HSFB2a(1)                                  ------>ZmHOX2a(2)                                 =================================HOX2a_HOX2a         --------->LBD16                                 <------ZmHOX2a(2)                                   <---------ANAC46                                --------->ARR11(3)                                   <---------DEAR3(1)           --------->YAB1   ---------->DOF2                                          <---------ATERF1(2)          --------->At4g35610   <---------ARR11(3)                    --------->ANAC55(2)    <-------        <---------ICU4  --------->ANAC58                              <---------ANAC55(2)    --------        --------->YAB1  --------->ANAC58                          <----------DOF2    --------->ATERF1(2)       --------->ICU4----------->RAV1(1)                --------->HSFB2a(2)         <---------LBD16       <---------ATHB12 ----------->RAV1(1) ---------->DOF2<------ZmHOX2a(1)     --------->ZAT14     --------->WOX13(1) --------->ANAC46 ----------->RAV1(1)     --------->TOE2(3)--------->ALFIN1   --------->ZAT14--------->ANAC58--------->HSFB2a(1)   <---------HSFB2a(2)      <---------ZAT14   <- ----ARR11(3)     --------->ANAC58================================HOX2a_HOX2a   --------->ALFIN1   <-   ctctctgcaatcatcagaactcgcaccagcaaaagatcgttcccaacaaagagtagttcgaggattacctttaagtaacacagtgtgccggtgaagacat  23390800                     ------>ZmHOX2a(2)                    <------ZmHOX2a(2)                    --------->GLK1(1)                   --------->ARR11(3)                   <---------ARR11(3)                   --------->ARR14(2)                   <---------ARR14(2)              ----------->RAV1(1)            --------->LBD16           --------->ANAC46           --------->RAP2.6(2)           ------->GAMYB         <---------At5g28300        <---------ARR14(2)        --------->MYB52(1)              <---------ANAC58         <---------ATHB12        --------->ARR14(2)              <---------ANAC58         --------->ICU4       --------->MYB46(3)               <---------ANAC46     ------------>CBF       <---------ATHB12              <--------P             --------->ANAC58            ------->GAMYB   <-----------------AGL1           <-------GAMYB           --------->ANAC46         --------->MYB52(1) --ARR11(3)--------->ANAC58         <---------ANAC58<---------ANAC58            --------->ZAT18 ->ARR11(3)--------->ANAC58     --------------------->WRI1  --------->AtLEC2    <---------ZAT18 --------ANAC58    <---------AGP1  <---------MYB46(3)       --------->ANAC58    --------->ZAT14 --------ANAC58    <-----------ARR10<---------ANAC58<---------ANAC58            <---------ZAT14    <-   ttcttgccaataaccgcaacagatctcatcatcttcttggttgcttcgaaaatggcttccccatgcaatgagttgagactactacactaacagcaaaatc  23390900                                                       <---------ZAT2                                                       <---------At4g35610                                   ------------>CBF    --------->ZAT2                 ---------->ID1         --------->ZAT14        <------MYB46(1)  <-----------HVH21                   <-----------GT1  <---------ARR14(2)            <---------MYB46(3)     --------->At4g35610       <----------DOF2  --------->GLK1(2)             <------MYB83<---------ARR14(2)             --------->YAB1  <---------  --------->ARR14(2)          <---------MYB52(1) <-------GAMYB           <-----------HVH21<----------DOF2 --------TOE1(2)          <---------ZAT14   --------->ARR14(2)  --------->TOE2(3)<---------DAG2   >>>   gcagaatccagtaaaccctataatcgagagcagttggttcaatgtcgattcggttacagctggttttcttaaaccggtcataacttttttctcttttata  23391000                                                                        <---------AtMYB61                                                               --------->At4g35610                                                               <---------ZAT2                                                               <---------ZAT14                      ----------->GT1                  <---------MYB55(2)                   <---------LBD16                     --------->MYB46(3)                <-----------HVH21               --------->YAB1 --------->ZAT2                     ---          <---------WOX13(1)                   <---------YAB1  <---------At4g35610            -------     --------->LBD16--------->LBD16      --------->ZAT14       --------->ZAT14                -------   <---------LBD16<-----------RAV1(2)    <---------ZAT14 ----------->RAV1(1)                  ------- --TBP   <------------CBF                <---------ZAT18 --------->MYB52(1)                   ------- >>>>>>GATA-1  <----------DOF2           --------->ZAT18--------->AtMYB61           <-----------GT1   gataaaccggagattgactttcaggggaaaaaaaaacatcgagagcactatgatcaaaccaccagagctgtgttttggtagcattttcaccctagttagt  23391100                                                                      --------->ZAT6                                                                ------>ZmHOX2a(2)                                                               --------->CCA1(2)                                                               <------ZmHOX2a(2)                                    ------->TEIL              --------->ARR11(3)                               <------------CBF         ==============HOX2a_HOX2a    --------->MYB46(3)     --------->LBD16              <------ZmHOX2a(1) ------>WOX13(1)          --------->O2                <---------TOE1(3) ---->GT1                 <---------ANAC46    <-----------GT1 <---------ARR11(3)                 ---- -->MYB59                 <---------O2<---------MYB59 <---------TOE2(3)                          ---- -->MYB46(2)             <---------LBD16    --------->AHL20(2)--------->AGP1                   <----- -->MYB52(2)          --------->ZAT18 --------->TOE2(3) ===============HOX2a_HOX2a             <-----   taatcaacaaatcgatgaactatgtgccccgtgaattgaacctaaattaaaccattaaggatgagatctaaaacactacatgaagacatcaatgctacca  23391200                                                                                      ---------->DOF2                                                                                  ------>MYB46(1)                                     ------>MYB46(1)                            <---------MYB46(2)                                   <---------MYB46(2)  --------->YAB1           <---------MYB59                                   <---------MYB59 --------------->AGL15      <---------At5g28300 -->MYB83                       <-----------GT1    <---------------AGL15     <-----------GT1 -->MYB46(1)              <<<<<<<<<RAP2.2   --------->DAG2      --------->WOX13(1)------>MYB83 ----MYB111(2)           <---------TOE2(3)---------->DOF2   <---------ZAT6<---------ICU4 ----MYB111(1)       <----------DOF2 ------>MYB83 ----------------->AGL3 --------->ICU4   acttacttagaacctcgcttcgacttttagattgttaccaaactaaaaggtgtccaaaaatagtgtcattcactaatttttaccgaactaaagctggttt  23391300  Previous    Next  AGI:  At1g63070.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63080.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62670.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63130.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 23388989    to: 23390832    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g63080.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62670.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G62930.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63130.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 23391296    to: 23394481    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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