Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        --------->ICU4                                  <---------ARR14(2)      <---------YAB1                                  ------->TEIL    --------->YAB1                                    --------->ARR14(2) <-----------GT1                                     <---------CCA1(2) ->ANAC46                                      <---------YAB1 ->AtLEC2                     <---------AHL20(2)--------->ATHB12 ->ANAC58         <-----------GT1            --------->YAB1                         <-----------GT1 ->ANAC58      --------------->AtSPL8      ------->TEIL                          ----------->GT1<----   atataaccatgatggtatttgtaccattgtatttcattttggctgaatcttgattgtatctgcaaactaattcgaacatgaaaatgttacattgttctca  23374600                                                                                     --------->ZAT14                                                                               <---------WOX13(1)                                                                            <---------YAB1                    <---------ANAC58                                        <---------AHL20(2)           --------->ARR11(3)                                              --------->AHL20(2)           --------->GLK1(2)                                               <---------AHL20(2)--------           <---------ARR11(3)                    <-----------HVH21  --------->ARR14(2)  --------->ANAC46       --------->YAB1<----------DOF2          ----------->RAV1(2)  <---------CCA1(2) <---------ZAT14 -----TOE1(2)       <---------ANAC58 ----------->GT1    <-------TEIL------->TEIL <-----------GT1 <---   tgttttctatgaaaatctattggctttagatgtgaagagaagaaaatcgcctgtcacatacatatgtctgtatccattttaattgactacacaaaaaaag  23374700                                                                                  ------>MYB83                                                                                  ------>MYB46(1)                                                                                --------->AtMYB61                                                                                <---------MYB55(2)                                                                                <---------MYB46(2)                                   <---------YAB1                               <---------MYB111(2)                                  <---------AHL20(2)                            <---------MYB111(1)                                  --------->AHL20(2)                            --------->MYB46(3)                                 --------->AHL20(2)                            --------->ANAC58              ----------->GT1<---------AHL20(1)                                --------->ANAC46            ---------->DOF2  --------->AHL20(2)                                --------->ANAC58          --------->YAB1     --------->AHL20(1)                               ------>NtERF2     <---------ATHB12        <---------AHL20(2)                              <---------ALFIN1   --------->GLK1(1)        <---------AHL20(2)          <---------At4g35610  --------->ANAC46 -->DOF2  --------->AHL20(2)--------->AHL20(2) <----------DOF2          --------->ARR14(2) ------ARR11(3)           --------->YAB1    <-----------GT1          --------->AHL20(2)XXXXXXXXXXXXXX   gtctgaaatcaataaaaagtttaaacaaaaataaattaaaattgtattactttcttacagctattacaaaaaaaaatccccaccaaacacaaacacaaac  23374800                             --------->MYB46(3)                           --------->YAB1                         <--------------OsCBT                     --------->ANAC58                     --------->ANAC55(1)                   <---------ALFIN1                       --------->TOE2(3)                --------->ANAC58  <---------ALFIN1        --------->TOE1(3)                --------->ANAC58--------->ANAC58       ------->GAMYB              --------->GLK1(1) --------->ANAC58      <---------MYB111(2)        --------->TOE1(3)      <----------DOF2--------->ANAC46                 --------->MYB46(3)         --------->TOE2(3)      <---------DAG2 --------->ANAC58     <---------At4g35610               ---------->DOF2 XXXXX>MIR158B<---------GLK1(1) --------->ANAC46    <-----------GT1      <---------ANAC55(2)        <   aaaacacacttttgggaaaccccacgcaataaccacgcactctcatctcatatttaacaaccttaatttctgatcacataaaaccctaatctatttctat  23374900                                                                                      <---------ARR14(2)               <---------ARR11(3)                                              --------->YAB1               --------->ARR11(3)                                              --------->AHL20(2)              <---------CCA1(2)                                             <---------ICU4 --------->ARR14(2)                                                         --------->YAB1 <---------ARR11(3)                                                        <---------AHL20(2) <---------ARR14(2)                                                        --------->AHL20(2)-------- <---------ARR11(1)                                                    --------->AHL20(1)    -------- --------->ARR11(3)                --------->AHL20(2)                 --------->YAB1  --------->ARR14(2) ---------CCA1(2)       ----------->TBP                  <-----------GT1  <---------AHL20(2)*TSS   ccatatctctctccctatatctacttatatataacaaataaacacataagttgacatatatactatatacaagtatattaattatacatatatggctgac  23375000                                                                                   ----------->HVH21                                                                                  <-----------HVH21                                                                                  --------->At5g28300                                                                                <---------DEAR3(1)                                                                              --------->ALFIN1                                                                             <-------MYC2                                                                             ------->MYC3                                                                             ------->MYC2                                                                             ------->PIF5                                                                             <-------MYC4                                                                             ------->MYC4                                                                             <-------PIF5                                                                             <-------MYC3                                                                             <-------PIF4                                                                             ------->PIF4                                                                            --------->O2                                                          <---------YAB1    --------->PIF3(3)                 ------->TEIL                         ================================MYC_MYB        ------>ZmHOX2a(1)                             <-------GAMYB         <---------PIF3(3)     <<<<<<<<<ARR2                                 <---------MYB52(1)       --------->TGA1a     <<<<<<<<<ARR1                                ------------>AtMYB77      <---------TGA1a     <<<<<<<<<ARR1                                <-----------TGA1          <---------O2     <<<<<<<<<ARR2 --------->TOE2(3)              ====================================MYC_MYB  --------->MYB46(3) ---------->DOF2              --------->TOE2(3)        <---------TOE1(2) --->HVH21 --------->ZAT6                         <-----------HVH21       <------------OsbHLH66 ->WRKY12 <---------ATHB12          <---------ATHB12 --------->MYB52(2)   <---------ALFIN1     ------   cctaacaatcctatcactgaacctaaagctataatccaatcttctacttcatcgtcagttactattgtgccagttcccacgtgcggtgacagcctctctg  23375100       <-------PIF5       ------->PIF5       ------->MYC2                                                      ------>ZmHOX2a(1)       <-------MYC2                                                   ------>NtERF2       <-------MYC4                                                  <---------ARR14(2)       <-------MYC3                                                  --------->ARR14(2)       ------->MYC3                                                 <---------At4g35610       ------->MYC4                                                 --------->ATERF1(1)      --------->TGA1a                                              <---------RRTF1(1)      <--------ABF1                                                <---------ATERF1(1)      <---------ANAC55(2)                                          <---------RAP2.3(1)      <---------ANAC46                                            <---------RRTF1(2)            <----      <---------TGA1a                                             <---------ANAC58              -----      --------->O2                                                <---------ANAC58             ------      <---------O2                                                <---------RAP2.6(2)         -------    <---------ALFIN1                                              <---------RAP2.3(2)         <------  ------>NtERF2                      --------->ZAT6               <---------RAP2.3(3)    ----------->GT1  <-----------HVH21    --------->ZAT18                           <---------LBD16  --------------->AGL15 ----->HVH21           <---------ZAT18                   <---------MYB52(1)       <---------------AGL15   actctgccacgtgtgaaaacccttgtccacttgatactatcactactactactactactgtttgttttgcggctccttcttctactgcaagtggtaatga  23375200                                                   --------->LBD16                         <---------DDF1<------NtERF2        --------->LBD16      <----------DOF2   --------->DEAR3(1)       <---------LBD16<---------ARR14(2)      --------->TOE2(3) --------->DEAR4(1)     --------->GLK1(2)--------->GLK1(1)      <---------ANAC58 --------->YAB1         --------->At1g77200    --------->ARR14(2)                      <---------ANAC58 -----ARR11(3)          --------->DREB2C(2)    <---------ARR14(2)             ----------->GT1 ---->ARR11(3)         --------->DEAR3(2) ---------->DOF2  <---------LBD16    --------->ALFIN1 --->YAB1         ----------->HVH21   --------->LBD16     <---------LBD16   <---------ANAC46 -->ICU4        <---------At4g35610  --------->LBD16 <----------DOF2       <------NtERF2        <---- ---YAB1        --------->At4g35610 <---------LBD16----------->GT1       --------->ETT(1)       -----   tattaatactttaatggccactgacaccgacatctctcgccggaaaaagaatccggtttatcggggaattcgttgtcggagtggaaaatgggtgtctgaa  23375300                                                                                ------>NtERF2                                                                                <---------RAP2.3(1)                                                                                <---------ERF1                                                                                <---------ORA47(2)                                                                               <---------ANAC46                                                                               <---------RAP2.3(2)                                                                               <---------RAP2.6(2)                                                                               --------->ATERF1(2)                                                                               <---------ATERF1(2)                                                                              <------NtERF2                                                                            --------->ALFIN1                                                                          <---------bZIP60(2)                                                                          --------->bZIP60(1)                                                                          <---------bZIP60(1)                                                                          --------->TGA1a                                                                          --------->O2                                                                          --------->ANAC55(2)                                                                          <---------ANAC55(2)                                                                          <---------ANAC46                              <---------ANAC46                            <---------O2                              <---------ANAC58              =================RAV<---------RRTF1(1)                      ------->MYC3                          <---------At4g35610<---------DEAR3(1)                      <-------MYC4                          <---------ZAT2<---------ANAC58                      -------->ABF1                         --------->ZAT2<---------TGA1a                      ------->MYC4                        <---------RAP2.6(2) <---------ABI4(1)                      ------->MYC2                 <------NtERF2          ===========================                      <-------MYC3                --------->LBD16         <---------ANAC58                      <-------MYC2               <---------ANAC46 --------->LBD16 <---------ANAC46                     --------->ANAC55(2)         --------->DEAR3(1)    ----------->TGA1<---------At4g35610                     <---------ANAC55(2)        <------NtERF2     ------>NtERF2<---------RAP2.3(3)                     --------->ANAC46           <---------LBD16  <---------ANAC46<------NtERF2                     --------->O2               --------->ATERF1(1)    ----------->HVH21 <-----------                     <---------TGA1a           ------>NtERF2----------->RAV1(2)<---------RRTF1(2)                     <---------O2             --------->DEAR3(1) ----------->RAV1(1)--------->DOF5.7(2)           ---------->DOF2    <---------ANAC58<---------DEAR3(1) --------->RAP2.6(2)<---------MYB52(1)           ====================bZIP_DOF       --------->ANAC46  --------->RAP2.3(1)<-----------HVH21 --------->LBD16     --------->TGA1a        <---------ATERF1(1)------>NtERF2----------->HVH21-------- -----GLK1(1)     <---------REM1(2)        --------->ANAC46<-----------RAV1(1)--------->ATERF1(1) ---->GLK1(1)     <---------ZAT14          ----------->HVH21--------->At4g35610<---------RRTF1(3) ---   atccgagagcctaaaaagactacacgtgtctggcttgggacttatccgacgccggagatggctgctgccgcatatgacgtggcggcgttagctcttaaag  23375400                                                                                               <-----                                                                                               ------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                    ------>ZmHOX2a(2)                                      ------>NtERF2                                   ============================HOX2a_HOX2a                 <---------RAP2.3(1)                                  <---------ARR14(2)                                       <---------ATERF1(1)                                  --------->ARR14(2)                                      <---------RAP2.6(2)                                  <-----------ARR10                                       <---------RAP2.3(2)                                  <---------ARR11(3)                                      <---------DEAR3(1)                                  --------->ARR11(3)                                  --------->At4g35610                              --------->LBD16                                         <---------At4g35610                             <---------LBD16                                <---------GLK1(2)<-------                            <---------LBD16                                 --------->ARR14(2) <-----                            ----------->RAV1(2)                  <---------ZAT2       --------->ZAT2                         <---------GLK1(1)                       --------->ZAT2       <---------ZAT2                         --------->GLK1(1)                       <---------At4g35610  ----------->RAV1(2)                        <---------ARR14(2)                    <---------At4g35610  <---------At4g35610                        <---------GLK1(2)                     --------->LBD16   --------->At4g35610                        --------->ARR14(2)         <----------DOF2    <---------CCA1(2)  <---------LBD16                      --------->LBD16 <-----------GT1        --------->ANAC46 <-------TEIL<---------ANAC46 ===bZIP_DOF         --------->LBD16===========================HOX2a_HOX2a  <---------ARR14(2) ------ ----AGL15          --------->HSFB2a(2) --------->ANAC46    <---------LBD16--------->At4g35610<------ -->DOF2            <---------LBD16<------ZmHOX2a(2)    ------>ZmHOX2a(1)  <---------At4g35610<------ ------>ALFIN1      <---------HSFB2a(2)-------->P <---------DAG2 --------->At4g35610<-----------RAV1(2)   gtggagacactctcttgaacttcccggattccctgggatcttaccccattcccctttcctcttccgcagctcatatcagatgcgctgcagctgcggctgc  23375500  Previous    Next  AGI:  At1g63040.1    Description:  pseudogene, DRE binding protein, similar to GI:3738224 from (Arabidopsis thaliana) (Plant Cell 10 (8), 1391-1406 (1998)); blastp match of 38% identity and 3.9e-24 P-value to GP|18535580|gb|AAK57551.1||AY034473 putative transcriptional activator CBF1 {Lycopersicon esculentum} Range:  from: 23374992    to: 23375738    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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