Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 <---------ATHB12                                                 -----                      <----------DOF2                                                    <------ZmHOX2a(2)                      <---------DAG2                                                 <------ZmHOX2a(2)                   <-----------GT1                                                 ------->GAMYB<----          ---------->DOF2 <-----------GT1                                         <---------MYB52(2)  --------->YAB1 <---------MYB59--------->YAB1     <-------TEIL                   --------->MYB46(3) <-------TEIL   <---------ANAC55(2)           ---------->DOF2                   --------->MYB52(1) -------->AtLEC2--------->ANAC55(2)  ---------->DOF2                  --------->GLK1(1)  ============   acatgcataaaccaaagtacttaacttttcacaatcatccaaagtaaacaaagttcatagaaacaaaatcggagttcaaagacaacgatcgatcaaattt  23365800                                                                                                -----                                                                                         ------------                                                                                         <-----------                --------->ANAC58                                                        <------------         ----------->GT1                            <---------ARR11(3)                  -------------        <-----------------------TaNAC69(2)          --------->ARR11(3)         ----------->GT1 <-----  ---------->DOF2 <------ZmHOX2a(1)             ---------->DOF2              ---------->DOF2 -------- ---->AHL20(2)  --------->ANAC58       --------->YAB1                   ----------->GT1 <------------ -----AHL20(2)  <---------TOE2(3)     <---------ATHB12                 ----------->GT1  <------------ ========================HOX2a_HOX2a--------->WOX13(1)             ---------->DOF2     --------->MYB52(1)   aaacaaaagaaccgtgataaggaatcagacacagtgatcaatcaaaaaaaaaaagaactcaaattgtttcaaagagataaaaagaaaattaccgaaaaag  23365900 ------>GT1 --->AGL15                                                             <---------ANAC58 ----AGL15                                                             <---------ANAC58             - -----AGL2                                                  <---------ANAC55(2)                    -- ---->AG                                                    --------->ANAC55(2)         ============= ----TOE2(3)   ---------->DOF2                              <---------ANAC58        --------->ARR14(2) -->DOF2     --------->ANAC58                               <---------ANAC58        --------->GLK1(2) -----AG     --------->ANAC58           <------ZmHOX2a(1) <-----------GT1           <---------ARR14(2) -----AGL1 --------->MYB52(1)         <---------TOE2(3)----------->GT1 <---------ANAC46 ------>ZmHOX2a(1)   gttttaaaaaaaaaaacgaaagaaaaaccagaagagaattgaggaagaacaacaatgtagttacttactcgtttcgtcgaacagagaatcctcactatgt  23366000                                                       <---------HSFB2a(1)                                                       --------->At4g35610                                                       --------->HSFB2a(1)                                                      ---------->TaMYB80                                                  --------->ANAC58                                                  --------->ANAC58                                                ------>NtERF2                                               ----------->HVH21                                               --------->DEAR3(1)                                           --------->ZAT2                                           --------->At4g35610                 --------->ZAT18           <---------At4g35610                 --------->ZAT14           <---------ZAT2     <------NtERF2   ------>ZmHOX2a(2)                    ------>ZmHOX2a(1)    --------->LBD16 ------->HAHB4   <---------ZAT14       --------->TOE1(3)    <---------ANAC46                  <------ ------->ICU4    <---------ZAT18       --------->TOE2(3)   <---------LBD16                 ---------- =========HOX2a_HOX2a                 ------>ZmHOX2a(2)<---------At4g35610             ---------->DOF2   aatgatccaattgaaacagtgcacagacaaaaacttctgatccttagctccgacggaagatgccggagaagaagttgaagaagagactctaaagaaagaa  23366100                                                 <------NtERF2                                                ------>NtERF2                                               --------->DEAR3(1)                                               --------->RAP2.3(3)                                               --------->RAP2.3(2)                                               --------->RAP2.6(2)                                              --------->DEAR3(2)                     ---------->DOF2                                              --------->ERF1   ---------->DOF2--------->DAG2                  --------->AHL20(2)          --------->RAP2.3(1)            ---------->DOF2            <------ZmHOX2a(1)                 --------->ATERF1(1)       ----------->GT1    ---------->DOF2                          --------->At4g35610     --------->MYB52(1)           --- ----ID1   ----------->GT1                   <---------ATERF1(1)    <---------ARR14(2)            <-- >DOF2    ----------->GT1           <----------DOF2 <---------MYB52(1)<-----------------------TaNAC69(2)   caaaaaaaaagagaggaaaaaaaaatcgaaatcggaggcttttgagaagccgccgtttgtattcccaaaggaaacgggaaaaagtgagaaagcagagaaa  23366200                                                                                ----------->GT1 -----                                                                          ---------->DOF2     <------                             *TSS<----------DOF2                       >>>>>>>>>TBF1   --------->MYB52(1)                     >>>>>>>>>>>>>>>>>LFY                       ---------->DOF2 <---------ZAT6<------ -------->GT1  <---------HSFB2a(2)                       ------------------------>ANAC81    <-------- --------ID1   --------->HSFB2a(2)             ------------------------>ANAC81----------->GT1--------   acgaaaaaaaaactcttctctaagtccaatggggactttggaatgtgagacaccaaaaaaaaaaaaaaaagaagaagaaagagtgtaaataccgaaacta  23366300                                   <---------ZAT14                                   --------->ZAT18                                         <---------     <---------ANAC46          --------------->AtSPL8                                      <---------DAG2   <---------WRKY18(1)    <----------DOF2              <---------ARR11(3)           --------->AHL20(2)  --------->WRKY12        <---------DAG2          <---------HSFB2a(2)               <---------AHL20(2)  --------->WRKY38(1)   ------>MYB83           <----------DOF2                      <---------YAB1  ----------->HVH21     ------>MYB46(1)       <---------DAG2                       --------->AHL20(2) --->P--------------->AtSPL8   <---------------AtSPL8 <---------GLK1(1)            <---------AHL20(2) ---MYB52(2)          <---------MYB59  <---------DAG2 --------->GLK1(1) <-------GAMYB   <---------AHL20(2) ---MYB111(1)         <---------MYB46(2)<----------DOF2--------->ARR11(3)        <---------YAB1<----- ---ARR10 ------->TEIL<---------MYB111(1)  <-----------GT1    <-----------GT1   <---------AHL20(2)  < ->HSFC1(2)        <-----------GT1 <---------ZAT18--------->HSFB2a(2)------>ZmHOX2a(1)  <-----------GT1   ccccttgacctgtacctctatttacctactttacgagtacaccttttaccttttggaaatctttttacttcctcggttgtattattttaattactttatg  23366400                                                                                   --------->AHL20(1)                                                                             ------>ZmHOX2a(1)                     --------->TOE2(3)                                      --------->TOE2(3)                     --------->TOE1(3)                               --------->ARR11(3)  <---------YAB1                     <---------DAG2                                  <-----------GT1    <---------AHL20(1)                     --------------->AGL15                           <---------ARR11(3) --------->AHL20(2)                     <---------MYB59                       --------->DAG2   --------->TOE1(3) -DOF2              ----------------->AG                  ---------->DOF2------>ZmHOX2a(1)    ------- ----YAB1     <-----------ARR10                     ---------->DOF2 --------->RVE1(1)   <---------AHL20(2) -----------GT1   <-----------GT1          --------->TOE1(2)        --------->CCA1(1)   --------->AHL20(1)   attttctgtttctgcgaattttaccttatttgtataaactctgaaactgggaagaaaagaaaaagttgaaatatccttccttaagtatattatattagct  23366500                                                                <---------AHL20(2)                                                                --------->AHL20(2)                                                          <-----------GT1                                                       <---------AHL20(2)                                                       --------->AHL20(2)                                                    <--------HAHB4                                                    --------->YAB1                                                    <---------ICU4                                                    --------->ATHB51                             ----                                                   --------->ICU4                         --------->AHL20(2)                                                   --------->AHL20(2)                    --------->AHL20(2)                                                 --------->YAB1 <---------YAB1           <---------AHL20(2)                   <---------MYB59            --------->YAB1 <----------DOF2         --------->AHL20(2)            <---------DAG2                   <---------YAB1  <---------DAG2          <---------AHL20(2)            <----------DOF2             ----------->GT1<---------ICU4            --------->ICU4------         <-----------GT1               --------->DAG2 <---------YAB1        ----------->GT1   ------- -->At4g35610    ---------->ID1       ---------->DOF2 --------->ICU4       <---------TOE2(3) --------   gtattagttttttacttttggcctaattttaaaactgacaaaaagttattagaataattaatactttttattagtttaatgtaatatttaaataaataaa  23366600                                                                                                  >>>                                                                                                  >>>                                                                                                  >>>                                                                                                  ---                                                                                                 ----                                                                                                <----                                                                                     --------->YAB1 ----->YAB1                                                                <-------TEIL  <---------YAB1 --->AHL20(2)                              ------>ZmHOX2a(1)  <---------ANAC58      <---------YAB1>>> -->YAB1                              --------->RVE1(1)       <---------ANAC58    --------->YAB1<---- ->AHL20(2)      <-----------GT1    --------->AHL20(2)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <-----   aataagtgtataactaaattttcatcttagcaaaaaaaaaaaatcctagtggtttttatttctagcttgatttttggttcataactataatatgaatagc  23366700  Previous    Next  AGI:  At1g63020.1    Description:  NRPD1a (NUCLEAR RNA POLYMERASE D 1A); DNA binding / DNA-directed RNA polymerase. similar to NRPD1b (nuclear RNA polymerase D 1b), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT2G40030.1); similar to RNA polymerase IV largest subunit [Solanum lycopersicum] (GB:AAY89360.1); similar to RNA polymerase IV largest subunit [Antirrhinum majus] (GB:AAY89361.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66198.1); contains InterPro domain RNA polymerase Rpb1, domain 3; (InterPro:IPR007066); contains InterPro domain RNA polymerase Rpb1, domain 4; (InterPro:IPR007083); contains InterPro domain RNA polymerase Rpb1, Range:  from: 23358682    to: 23366229    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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