Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->LBD16                                                                              ------>NtERF2                                                                              <------NtERF2                                                                             --------->DEAR3(1)                                                                             --------->RAP2.3(3)                                                                             --------->RAP2.6(2)                                                                             ----------->RAV1(1)                                                                             --------->RRTF1(3)                                                                             --------->RRTF1(2)                                                                             --------->RAP2.3(2)                                                                            --------->RAP2.3(1)                                                                           --------->At4g35610                                                                           ------>NtERF2                                                                           --------->LBD16                                                                           <---------ATERF1(1)                                                                          --------->DEAR3(1)                                                                          --------->ANAC46                                                                          <---------ALFIN1                                                                         --------->RAP2.3(1)                                                                         --------->ATERF1(1)                                                                         <------NtERF2              --------->TOE2(3)                       <---------ANAC58  <---------ATERF1(1)   <---------At4g35610                                <---------ANAC58  <---------RAP2.3(1)   --------->ZAT2         --------->ZAT14        <----------DOF2       --------->ARR14(2)       <----   <---------ZAT2   --------->TOE2(3)          <------NtERF2           <---------ARR14(2)       <----   --------->At4g35610    <---------ZAT14     ------>NtERF2        ======================RAV   <----- --------->DOF2<---------MYB52(1)            <---------ANAC46      <-----------RAV1(2)      <-------- ---ANAC58   <---------ANAC58             --------->ANAC46      <------ZmHOX2a(1)   <---------TOE2(3) ---ANAC58   <---------ANAC58            --------->SPL7      <---------HSFB2a(2)    <---------TOE1(3) ---ANAC46   <---------ANAC46           ------>ZmHOX2a(1)    --------->HSFB2a(2)<----------DOF2<-----   gagaaagctgggtttgcgttaatctcagtgaagaaacgtttcctacggcgtctttttcttgctctaggaccaggctccgccgcattagggttttgtgatt  23270500                      --------->GLK1(2)                     --------->ARR14(2)                     <---------ARR14(2)                     <---------ARR11(3)                     <---------GLK1(2)                     --------->ARR11(3)                    --------->HSFB2a(1)                    <---------HSFB2a(1)           <---------ANAC58                    --------->HSFC1(2)            <---------ANAC58                    <---------HSFC1(2)           <-------TEIL             <---------ARR14(2)                 --------->GLK1(2)     <-------GAMYB ----------->ARR10           <---------GLK1(2)                                   <- -------RAV1(1)------>ZmHOX2a(2)        <---------ARR14(2)                       <------ZmHOX2a(1) -- -----MYB46(3)<------ZmHOX2a(2)         --------->GLK1(2)                  <------ZmHOX2a(1)      <-- ----WOX13(1)--------->ARR14(2)         --------->ARR14(2)              <------ZmHOX2a(1)    <------- -YAB1<---------MYB52(1)  <<<<<<<<<TBF1<---------GLK1(2)              --------->ALFIN1       <------- ----YAB1----------------->AGL1  --------->DEAR3(1)                  <------ZmHOX2a(1)       --------   gttgctccgttaccagatcggaagattcttcttcaccgagcgattctgagattcgtgcttcgactggaagaggaggaggaagaggaagaggctgaagctc  23270600                                                                                                    -                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               <-----                                                                                              ------>NtERF2                                                                                              <------                                                                                             --------                                                                                             <-------                                                                                             --------                                                                                             --------                                                                                            ---------                                                                                            <------NtERF2              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          ---------              <---------WRKY38(1)                                                           ---------           <------MYB83                                                                    ------>NtERF2        <-------GAMYB                                                                      <---------ATERF1(1) <---------DOF5.7(2)                                                                       <---------RAP2.3(1) --------MYB52(1)                            <---------AHL20(1)                           --------->DEAR3(1) ------->DOF5.7(2)                           <---------ARR11(3)                           <---------DEAR3(1) -----GAMYB<------MYB46(1)                   --------->ARR11(3)                          --------->ATERF1(1) --At4g35610  <---------WRKY12               --------->AHL20(1)                         <-----------HVH21 --ZAT2<---------MYB46(3)        <---------RAP2.6(3)           <---------DEAR3(1)       <---------ATERF1(1) ->At4g35610<-----------HVH21   --------->RAP2.6(2)     <---------MYB52(1)             --------->ANAC46   cgttaatggcgattggtcatcgagtgagttttggccgtcttcttcaatattttgctccgattggctcggtgagagtgagaagtctgtctccgtcgccgac  23270700                           <------NtERF2                           <---------------------WRI1                          ------>NtERF2                          <---------RAP2.3(1)                         <---------DEAR3(1)                         <---------At1g77200                        --------->ATERF1(1)                        <------NtERF2                       <---------ATERF1(1) -------->At4g35610    <-----------HVH21 ---->ANAC58           <---------SPL7 ---->ANAC58          <---------DEAR3(1) ---->ANAC46        <-----------HVH21 -NtERF2           <---------O2 ---ATERF1(1)      --------->O2                         --------->LBD16 --->HVH21         <---------TGA1a              <-------TEIL                              <---------LBD16 --DEAR3(1)        --------->ANAC46            --------->ARR14(2)                     --------->ARR14(2) ->At1g77200       --------->TGA1a             <---------ARR14(2)                     <---------ARR11(3) ->DEAR3(1)      <---------DOF5.7(2)           <-----------ARR10                      --------->ARR11(3) >DEAR3(2)     <-----------HVH21         --------->HSFB2a(2)     ----------->RAV1(1)<---------TOE1(2) >RAP2.3(1)    --------->DOF5.7(2)--------->At4g35610 <---------LBD16               --------->LBD16 >ATERF1(1)--------------------->WRI1    <---------HSFB2a(2)<-------TEIL      <---------GLK1(1)   gcatcagaaacgacttcgttcacgtcgtcggcgataagctctccgagaggttcttcaccgggtacatccacagtagtatgagttcccaggtcttcgggtt  23270800                                                                   *TSS                                                                  <---------ANAC58                                                                  <---------TGA1a                                                                  <---------bZIP60(2)                <----------DOF2                                   ===================================            --------->GLK1(1)                                     <---------ANAC58        <---------ANAC46                                          =====================bZIP_DOF     <      <-----------HVH21     <---------ETT(2)                      <---------O2   --------->ZAT14    -   <---------ANAC58       --------->At4g35610         --------->ICU4        ---------->DOF2        <-   <---------ANAC58       ==================================================MYC_MYB       <----------DOF2   <---------ANAC46       <-------GAMYB   <---------AGP1       ----------->HVH21<---------REM1(1) <--  <---------LBD16         <---------At4g35610<---------ANAC46  ----------->TGA1 --------->ALFIN1  ---   tagtttcgggtcgggtttctttagtctctgttgacatagctctagctctgtgtgtgatgatgtgagtgacgagtctaccaaagtgtagccttcttttctt  23270900                 --------->ANAC46              --------->ARR14(2)        --------->ANAC58              <---------ARR14(2)        --------->ANAC58             --------->CCA1(2)       ------->TEIL            <---------------AtSPL3  <---------ALFIN1           <------MYB46(1)         <---------ZAT14           <------MYB83            <---------ZAT18                          --------->DAG2    ---------->DOF2                --------->At4g35610                      --------------->AtSPL8 ==============bZIP_DOF        ------>ZmHOX2a(2)                            --------------->AtSPL3 ---------------AGL15         <---------GLK1(1)                             <---------------AtSPL8 -------------->AGL15        --------->ARR11(3)                            ---------->DOF2  --------- ----------------AGL3<---------DOF5.7(2)--------->ANAC46               --------->HSFB2a(2)  --------- -------At4g35610--------->ANAC58  <---------At4g35610<---------ANAC58 <---------HSFB2a(2)  <-------- ------>At4g35610--------->ANAC58  --------->ZAT14    <---------ANAC58 --------->HSFC1(1) <---------MYB52(1)   agctaaaaaaggaaggtatacggcaacgtttgatctctgcacccgaaatgtatgggccttggcccagacccatctagaaaagtaccccttcggtttgtta  23271000                                                                                       <---------YAB1                                                                                     --------->YAB1                                                                                     <---------ICU4                                                                                     <--------HAHB4     <------ZmHOX2a(1)                                                              <---------YAB1   --------->MYB59                                                                  --------->ICU4 <<<<<<<<<MYB98                                                                     <---------ATHB12 >MYB52(2)                                    ------>ZmHOX2a(1)                   --------->YAB1 -->GT1                  --------->ZAT18      <----------DOF2                     <---------ICU4  --- -MYB46(3)           --------->ATHB12       ------>ZmHOX2a(2)                  --------->YAB1     <--   tttgttaggactattgcattgaaagattgcacaatatcagttttgatcctttgttttcgcttaaacaatacaagtgaaatttcataatcattatacaaat  23271100          <----------DOF2       <---------ARR11(3)                           --------->At4g35610                           <--       --------->ARR11(3)                      <-----------GT1                                   <---      <---------CCA1(2)                 --------->GLK1(2)--------->MYB46(3)                  <-------    --------->AHL20(2)                  <---------ARR11(3)                                --------->GLK1(2)   <---------YAB1            <---------YAB1    --------->YAB1   ----------->GT1          <---------GLK1(2) ------>ANAC55(2)  <---------YAB1       --------->ARR11(3)  ---------->DOF2            ----------->ARR10 -------ANAC55(2)  --------->AtLEC2    --------->RVE1(1) ----------------->AG       <---------MYB59   aagtgattatatctttatgtcatgaaaacttattatacaaaaaatctatttatcatctaaccaaaagagtaaatgggggaacatgacctaagattctttt  23271200                                                                          <---------YAB1                                                                          <---------TOE2(3)                                                                    <------ZmHOX2a(1)          <---------ANAC58                                      --------->ICU4          <---------ANAC58      --------->ANAC58             <---------MYB52(1) ---------GT1           ---------->DOF2                     <-----------TGA1                     <--- --------GT1      ---------->DOF2           <----------DOF2 <-----------HVH21         <---------LBD16 ---DOF2  <---------ANAC46      --------->ANAC58           --------->ANAC46        --------->ATHB12   aaacctctagtgtcgttttcgaaagggaaagaacaagacaattcttctttgtgccataactccgtcattaggaattaagattgaattatggggaacaaat  23271300                             <------MYB83           <---------------AGL15                            ------->GAMYB   <------MYB46(1)           <------MYB46(1)               --------->ANAC58   <------MYB83 ---------->DOF2                            --------->ANAC58  --------->MYB46(2)--------->YAB1                       --------->MYB52(1)  --------->MYB111(1)    <---------REM1(1)          <---------ANAC58             <-----------GT1-----  --------->MYB59--------->DAG2                     <---------ANAC58            <-----------GT1<----- ----TEIL  --------------->AGL15                    <---------ANAC46<---------AHL20(2)  <----------DOF2   acattaggtactactagataaagcataatgtaggtttttgtttgttttttgtttgtgtgcaacggcatatataatgtagtatttaacattcttttctgaa  23271400  Previous    Next  AGI:  At1g62830.1    Description:  LDL1 (LSD1-LIKE1); amine oxidase. similar to FLD (FLOWERING LOCUS D), amine oxidase [Arabidopsis thaliana] (TAIR:AT3G10390.1); similar to LDL2 (LSD1-LIKE2), amine oxidase [Arabidopsis thaliana] (TAIR:AT3G13682.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68900.1); similar to hypothetical protein OsJ_008147 [Oryza sativa (japonica cultivar-group)] (GB:EAZ24664.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43107.1); contains InterPro domain SWIRM (InterPro:IPR007526); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937) Range:  from: 23268155    to: 23270867    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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