Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <------ZmHOX2a(2)                       <---------ARR11(1)                       <---------ARR14(2)                       <---------AGP1                       --------->ARR14(2)                       <---------ARR11(3)                       --------->ARR11(3)                       <-----------ARR10                      <---------CCA1(2)                      <---------ARR14(1)                     --------->LBD16                   <---------LBD16      ----------->RAV1(1)                  --------->MYB52(1) <------ZmHOX2a(2)              ==============================HOX2a_HOX2a              ==================HOX2a_HOX2a    ------->TEIL              ------>ZmHOX2a(1)     --------->AGP1          <---------ARR14(2)        --------->ARR14(2)          --------->ARR14(2)        <---------ARR14(2)         --------->YAB1                  <-----       --------->AHL20(2)          --------->At4g35610        <---------ATHB12   <------NtERF2 ------ ---ATHB12--------->ARR11(3)   <-----------HVH21    <----------DOF2           <---------At4g35610 -->MYB46(3)  =================HOX2a_HOX2a     -------->P ------>ZmHOX2a(2)   --------->At4g35610   - >P    <---------AHL20(2)------>ZmHOX2a(2) --------->TOE2(3) --------->ANAC46 --------->ZAT2   <-----   ttctagcaataaaatcctcataccggatcttaccatcagatccaacatcaacctctttgatccactcatcaaactcactcggctgcaatttctcaccgat  23267600                                   --------->GLK1(2)                                   ------->TEIL <---------ANAC58                        ----------->RAV1(1)     <---------ANAC58                        <---------ALFIN1      ------>MYB83                   --------->CCA1(2)          ------>MYB46(1)                    <------NtERF2                   <------ZmHOX2a(2)        <---------MYB59                  --------->At4g35610                  --------->ARR14(2)       --------->HSFB2a(1)               <---------At4g35610                  <---------ARR11(3)       <---------HSFB2a(1)    --------->ANAC46                  --------->ARR11(3)       --------->HSFC1(2)     --------->ANAC58     <---------SPL7                  <---------ARR14(2)       <---------HSFC1(2)     --------->ANAC58   <------ZmHOX2a(2)   <---------TOE1(2)------>ZmHOX2a(2) --------------->AtSPL8<----------DOF2  <---------ZAT2 ----ARR14(2)     <---------AGP1<---------MYB52(2)     --------->ANAC58      --------->ZAT2 --->ARR14(2)     --------->AGP1--------->MYB46(3) <-----------HVH21        --------->GLK1(2) -------->ANAC46 <---------CCA1(2) <---------ARR14(2)  --------->ANAC58     ------->TEIL--------->MYB52(1) ----GLK1(2)    ----------->ARR10  --------->ARR14(2) --------->WOX13(1) --------->ANAC46--------->SPL7   actcgtaagtatatgtctcagatctgccacagcaacgaatccagtaccttccttgtcaagcactttgaacgcatcacgaagctggcgatcgaacggctct  23267700                      ------>ZmHOX2a(2)                     <------ZmHOX2a(2)                                --------->ICU4               <-                     --------->CCA1(2)                                <---------YAB1               <-                    --------->ARR11(3)                  <---------GLK1(2)<---------WOX13(1)       <--                    <---------ARR11(3)                  --------->ARR14(2)                        <--                    --------->AGP1                    ----------->ARR10--------->ATHB12       <------                    <---------AGP1                <---------O2     --------->ICU4            <-------GAMYB       <---------HSFC1(2)      --------->ATHB12   <---------TGA1a  <---------MYB52(1)    --------->GLK1(2)       --------->HSFC1(2) <------ZmHOX2a(1)--------->SPL7--------->GLK1(2) --------->ATHB12 <--------    <---------At4g35610<---------HSFB2a(2)--------->MYB52(1)   --------->LBD16        <---------YAB1   gttttcagatgtttcgccattagatctaggaatcgattgaaatcgaacggagacgagagattctccgtcgttatgattgatttgagttgtgattctgttg  23267800                                                                --------->REM1(2)                                                          ------>NtERF2          ----------->HVH21                              --------->DEAR3(1)       ------>NtERF2                                    --------->ATERF1(1)      --------->DEAR3(1)             <---------DEAR3(1) <------NtERF2     --------->ATERF1(1)          ----------->HVH21     --------->RAP2.3(1)     <------NtERF2            <---------At4g35610      <---------RAP2.3(1)    <---------At4g35610       --------->GLK1(1)        <---------ATERF1(1)    ------>NtERF2             <---------GLK1(1)        ------>NtERF2   --------->DEAR3(1)         --------->ZAT2          --------->DEAR3(1)   --------->ATERF1(2)        --------->At4g35610     <---------DEAR3(1)   <---------ATERF1(2)        <---------ZAT2         --------->ATERF1(1)  <---------RAP2.6(2)      <---------ANAC58          <------NtERF2 --------WOX13(1)          <---------ANAC58         <-----------HVH21 --------GLK1(1)        --------->GLK1(2)           ------>NtERF2 <---------ANAC46 -------ANAC58         <---------GLK1(2)           --------->DEAR3(1)                   --------->ATHB12 -------ANAC58       <---------YAB1------>NtERF2   <---------ATERF1(2)               --------->TOE2(3) ---MYB52(1)         <---------TOE2(3)<---------DEAR3(2)--------->DEAR4(2)    ------->TEIL  --------- ---RAV1(1)      <----------DOF2  --------->DEAR3(1)<---------ATERF1(1)    <---------YAB1 <---------WOX13(1)   gattgccgccgagtgaccgcattaagattccgagctccgacggtgcgattttgccgtcgccgtctgtgtcgaatagcatgaatgcttccttcattgatga  23267900                                                          <---------ARR14(2)                                                          --------->ARR14(2)                                                       ----------------->AGL1                                               <---------ANAC55(2)                   ------>MYB46(1)             <---------ANAC46                --------->MYB46(3)             --------->ANAC55(2)     --------->MYB52(2)                        <---------ANAC55(1)    <-----------------AGL1       --     <---------MYB46(3)                        <---------ANAC58    ----------->HVH21               <-     <---------DEAR3(1)                        <---------ANAC58   --------->ETT(1)           <------- >YAB1<-------GAMYB------>MYB83               <---------LBD16   <-----------HVH21            --------   gacttggtcgttgctcaaaccatccttgctcatcttcgattcggttcttacgggttttcgaattcgggtcggacctcttatggagaattcaatcgaatcg  23268000                                 --------->YAB1                        <---------ANAC46                        <---------ANAC58                        <---------ANAC58                                     <------NtERF2   ========                    --------->ZAT14                                        <---------DEAR3(1)--------                    <---------ZAT14                                 <--------ATHB1           <------ZmHOX2a(2) ------------------->WRI1       <---------YAB1                      --------->YAB1          <-------- ---------DOF2      --------->REM1(2)                              <---------ATHB51   <---------ANAC58 --ARR14(2)   *TSS --------->ALFIN1                   --------->GLK1(2) --------->ANAC46    --------- ->ARR14(2)   ------>NtERF2<----------DOF2   ---------->DOF2   ------------>CBF       <---------ANAC58   tctttgttcttgacgacgactgtgtagcgtttttttgataatttagagaaagagagaatcagagaaacaataatacgtcgtcgtttttgcttaagatcaa  23268100                                                                                     ----------->GT1                                                                                     <---------ANAC55(2)                                                                                     --------->ANAC55(2)                                                                             <-----------HVH21                                                                            =========================                                                                            --------->ANAC46       <---------AHL20(2)                                   ----------->GT1 --------->O2      --------->YAB1                              <---------YAB1            --------->ANAC58      --------->AHL20(2)                         <---------AHL20(2)         =========================      <---------AHL20(2)                 --------->WOX13(1)--------->DAG2   --------->ANAC58     <---------ATHB12                   <---------ICU4    ---------->DOF2   <---------O2 ------------>CBF                      <---------YAB1 --------->YAB1        --------->TGA1a =========================HOX2a_HOX2a  <---------ATHB12   ============================bZIP_DOF ---->CBF                       --------->ICU4   --------->AHL20(2)         <---------TGA1a -ARR11(3)                      <---------YAB1  --------->YAB1          <-----------HVH21       <---- >ARR11(3)         ------>ZmHOX2a(1) --------->YAB1--------->YAB1      --------->ANAC46    ----------   tggtccaattatatgggcttcctaagcccatgtgaagattaatcattcaattttaataagaaaagtaaacttcacttcacgtcaaataagtaacaaagct  23268200                                                                --------->ZAT2                                                                <---------At4g35610                              ---------->DOF2                   <---------ZAT2                   <---------MYB52(1)                          ------->TEIL                  <----------DOF2                             <-----------RAV1(2) --------->TOE2(3) =bZIP_DOF       <---------ANAC58                           --------->ANAC58 --------->AHL20(2) =bZIP_DOF       <---------ANAC46                           --------->ANAC46 <---------AHL20(2) ------DOF2      <---------ANAC58                           --------->ANAC58--------->YAB1 >DOF2          <---------------------WRI1       <-----------GT1--------->At4g35610           <------   ttgttttccaaaatgttttgcgttaagtacaaaaaagattagaacaacaatttacaacgtagacgcagctgaatacaattttaatctaaatctattttac  23268300           ------>ZmHOX2a(2)          <------ZmHOX2a(2)                   <------ZmHOX2a(2)         <---------ARR11(3)                  --------->ARR11(3)         --------->ARR11(3)            --------->ZAT14         <---------AGP1                <---------ZAT14         --------->AGP1             <---------ANAC46         --------->ARR14(2)     <----------DOF2                                                  <---     ---------->DOF2          --------->At4g35610                                       <------ZmHOX2a(1)   <---------ATHB12           <---------At4g35610                                 <---------ETT(2) -----GT1<---------ARR14(2)   <---------ZAT2 <---------ARR11(3)    ---------->DOF2--------->ETT(2)---   tactaatcaaagatctgtcgattcagtcttgcagctttgagtgaagagatcatcgattccccttcttgagaaagactcttcctttcgacaggaacaagtc  23268400                                                                                      --------->ANAC58            --------->ANAC58                                                          --------->ANAC58        --------->ANAC58                                                 --------->ZAT6        --------->ANAC46                                               <-----------HVH21  ---------->DOF2        --------->ANAC55(1)                                         <---------ANAC58 --------->DAG2        <---------ANAC55(2)                                     <---------ANAC58 --------->TOE1(3)        --------->ANAC55(2)                       ------>MYB46(1)   <---------ANAC58---------->DOF2        --------->ANAC58                          ------>MYB83  <---------ANAC58 --------->TOE2(3) ------MYB59--------->ANAC58                 <-----------GT1<---------ANAC58 <---------ZAT14       <- --->ZmHOX2a(1)   <---------ICU4--------->At4g35610         <---------ANAC58 --------->ZAT14  <------   ctaacttctcacgcaagtattcatttctcaactcatctccatccatttcaccaagctcaatagcttgcttccttgtcactaaaccgtaaagccaaagacc  23268500  Previous    Next  AGI:  At1g62820.1    Description:  calmodulin, putative. similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT1G12310.1); similar to EF hand family protein [Solanum demissum] (GB:AAT40490.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 23267336    to: 23268014    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g62830.1    Description:  LDL1 (LSD1-LIKE1); amine oxidase. similar to FLD (FLOWERING LOCUS D), amine oxidase [Arabidopsis thaliana] (TAIR:AT3G10390.1); similar to LDL2 (LSD1-LIKE2), amine oxidase [Arabidopsis thaliana] (TAIR:AT3G13682.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68900.1); similar to hypothetical protein OsJ_008147 [Oryza sativa (japonica cultivar-group)] (GB:EAZ24664.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43107.1); contains InterPro domain SWIRM (InterPro:IPR007526); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937) Range:  from: 23268155    to: 23270867    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version