Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             xxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                        -------------                             <-----------RAV1(1)                                        xxxxxxxxxxxxx                            <------------AtMYB77                                        xxxxxxxxxxxxx     <---------WOX13(1)   --------->MYB52(1)                                           xxxxxxxxxxxxxx   --------->ATHB12   <---------MYB46(3)                                    <---------ANAC58  --------->ICU4    <---------MYB52(1)                                      <---------ANAC58  <---------YAB1   <-------GAMYB                                    <----------DOF2    xxxxxxxxxxxxxx --->AHL20(2)     --------->MYB55(2)                               <---------ANAC58   xxxxxxxxxxxxxxx ----AHL20(2)     <---------MYB46(3)  <---------At4g35610          <---------ANAC58   xxxxxxxxxxxxxxx   aatattgattaacttacaggtcgttggctaactgttgctctgctcttctcacaacatcaagaacaagaggctttccttccttgacaaaaaaaaaaaaaaa  23260700                                                                                     --------->CCA1(2)                                                                                     <------ZmHOX2a(2)        <----------ID1                                                              <---------AGP1     ---------->DOF2                                                                --------->ARR14(2) xxxxxxxxxx>smallRNA(le3)                                                           <---------ARR14(3) xxxxxxxxx>smallRNA(le3)                                                            --------->GLK1(2) xxxxxxxxxx>smallRNA(si3)                                                           <---------ARR11(3) xxxxxxxx>smallRNA(le3)                                                             <---------ARR14(2) xxxxxxxxx>smallRNA(si3)                                                            --------->ARR11(3) ----------->ANAC81                                                                 --------->ARR14(3) xxxxxxx>smallRNA(le3)                                                     <---------GLK1(2) xxxxxxxx>smallRNA(si3)                                      --------->AHL20(2)<---------YAB1    ---- xxxxxx>smallRNA(le3)                         --------->ANAC58           --------->ICU4       <------ xxxxxxx>smallRNA(si3)                        --------->ANAC58           <---------YAB1    <---------ICU4 xxxxx>smallRNA(le3)            --------->YAB1--------->ANAC46  --------->TOE2(3) ----------->ARR10 xxxxxx>smallRNA(si3)          <---------ATHB12       ----------->GT1 <---------ATHB12------>ZmHOX2a(2)   aaaaaaaaaaagaacaaggagaagactaatctaatcaaaactttgaactcgcaaaatggctaattaacttaaatcaagattatgaagatctgaaaattac  23260800                                                                                            <--------                                                         --------->ANAC58                 --------->AHL20(2)                                              <------ZmHOX2a(2)     <---------ANAC55(2)  --------->AHL20(1)                                             <---------ARR11(3)     --------->ANAC55(2)  <---------AHL20(1)                  --------->At4g35610        --------->ARR11(3)   <-----------GT1       --------->AHL20(2)              --------->TOE2(2)             <------ZmHOX2a(1)  <---------ICU4       <---------YAB1             ----------->RAV1(2)            --------->YAB1    --------->ICU4      --------->YAB1         <------MYB46(1)             --------->LBD16     --------->ANAC46        <---------YAB1      <---------MYB52(1)           <---------LBD16       --------->ANAC58      <---------ICU4 ----->TOE2(3)--------->TOE1(2)  --------->MYB52(1)      --------->AtLEC2      --------->YAB1<------- -----GT1<------MYB83            <-----------GT1      <---------REM1(2)     --------->TOE2(3)--------   ctcagttcgataggtacctgcgctcaaattcaacttaaccggactaggatcatctctacaagcaaaaattacctgtttccataatcataaatatatatat  23260900                                                                                        --------->CCA1(2)          <---------YAB1                     <---------AHL20(2)                        <---------ARR11(3)  ---------->DOF2         <------MYB83      <---------YAB1                             --------->ARR11(3) -AHL20(2)<---------TOE2(3)               --------->YAB1 ---------->DOF2           ---------->DOF2 --AHL20(1) --------->TOE2(3)      ----------->GT1     --------->YAB1            --------->ANAC58 ->AHL20(1)--------->YAB1 <------MYB46(1)<---------AHL20(2)   ----------->GT1    --------->ANAC58   tagaaaaagattaacataaatacacatttggtcgaagaagtatataataaatgtttatcaaaagaagtatataagaaatcaacaagaaagatataagtga  23261000                                                  <------ZmHOX2a(1)                                               <-----------RAV1(2)                                              --------->At4g35610                                              --------->ZAT2                                              <---------At4g35610                                              <---------ZAT2                                          <---------HSFB2a(2)                                          --------->HSFB2a(2)                                         <---------LBD16                                        <---------LBD16                                      ------>ZmHOX2a(2)                                     <---------GLK1(1)                                     <---------HSFB2a(1)                                     ====================HOX2a_HOX2a                                     ========================HOX2a_HOX2a                                     <------ZmHOX2a(2)                                    <---------ARR14(3)                                    --------->ARR14(3)                                    --------->ARR14(2)                                    --------->ARR11(3)                                    <---------ARR14(2)                    --------->ZAT14 <-----------ARR10                    --------->ARR14(2)=======================HOX2a_HOX2a                    <---------ARR14(2)===================HOX2a_HOX2a                    <---------ZAT14 <---------ARR11(3)                                 <---------WOX13(1)            <----------DOF2        <---------GLK1(2)        ----------->HVH21        --------->ATHB12      ---------->DOF2              <------ZmHOX2a(1)  <------ZmHOX2a(1) <---------GLK1(1)      ------   aatcgatgaaaagcctttagagtatacactgagaacaggatcttcgggagcaggaaggacgcttgacaagatggaattcatgagaattgattgaatcagt  23261100                                                                                          -----------                                                                                       --------->DEAR3(1)                                                    ---------->DOF2                    <---------MYB111(2)                                             <------------CBF                          <---------MYB111(1)                                            <---------ICU4                             --------->MYB46(3)                                            --------->ATHB12                           <---------MYB55(2)                                            <------------ATHB5                         <---------MYB46(2)                                            -------->ATHB1                      <------MYB83        -                                            <--------ATHB1                      <------MYB46(1)     <                                            --------->ATHB51                   <---------TOE2(3)  ---                                           <---------YAB1                      --------->MYB59    ---                                           <<<<<<<<<<AGL24                 --------->ATHB51  <-------                                           <---------ATHB12                <---------ICU4-------->P--                                           --------->ICU4                  <--------HAHB4------>MYB83                            *TSS           <<<<<<<<<<AGL22                --------->ICU4 ------>MYB46(1)                         --------->AHL20(2)<<<<<<<<<<AGL20                <---------YAB1--------->MYB55(1)                        --------->AHL20(2) <---------ATHB51         ---------->DOF2<-------TEIL   ---     ------->TEIL     --------->TOE2(3)  --------->WOX13(1)        --------->AHL20(2)  --------->AtMYB61 --->At4g35610      <-------TEIL       ------------>CBF --------->ALFIN1--------->YAB1--------->MYB46(3)   tgaaatgaatttgaccccaaaattcattaaaaaaaaaaaaaaccaattattgaacaaagtgttgagaaattaaagcataattaggttcaccaacctgtcc  23261200                                                        <---------MYB59                   -----------                                                       ----------------->AGL1            <---------TOE2(3)                                                       ============================================MADS_MADS                                             --------->AHL20(2)                          --------->MYB59                                             <---------ICU4                         <---------AHL20(2)                                         <---------YAB1----------------->AG         --------->AHL20(2)                                         <---------AHL20(2)                         --------->ATHB51   ------->MYC3                          --------->AHL20(2)                         <---------ICU4   <-------MYC3                         <---------AHL20(2)  <---------ATHB12       --------->ICU4 >RAV1(2)                               --------->AHL20(2)------>MYB46(1)          <---------------AGL15 ------>GAMYB                      <---------YAB1    <-----------GT1            <---------AHL20(2) ---------ALFIN1               <---------ANAC58  --------->AHL20(2)             <---------YAB1 ----->P                      --------->ATHB12   <---------AHL20(2)             --------->AHL20(2) --->MYB83                   <---------YAB1  --------->ATHB51                  <---------AHL20(2) ----HVH21                   --------->ICU4  <---------AHL20(2)--------->At4g35610<-----------------AG ------->MYB46(3)--------->YAB1<---------ANAC58 <---------AHL20(2)             --------->AHL20(2) --->MYB46(1)  ------->TEIL<------------CBF --------->ICU4------>MYB83     <---------CCA1(2)   aaccacatgtccacatgaatcatactatgtattgattgtgattttaattatttatttaccaaatcagttcaattcgcatattttaattatttaggtaaat  23261300                             <----------ID1                       --------->AHL20(2)                       <---------AHL20(2)                      --------->AHL20(2)                      <---------AHL20(1)                      <---------AHL20(2)                                                          <--                  <---------AHL20(2)                            ----------->GT1   <---------ANAC58<--                 <---------AHL20(2)                  ----------->GT1      ------------>AtMYB77    ---                 --------->AHL20(2)   --------->TOE2(3)    --------->MYB52(1)     <---------ANAC58--- >GT1      --------->YAB1  <---------ICU4          ---------->DOF2    ---------->DOF2     <---------AtLEC2   aactaaaaattaagcatattttaatttaattaagacaaaaacttaacaagaagaaaagaaaaaacgaagtaacaaagcacagttgcatacttgcattgaa  23261400                                                             --------->At4g35610                                            <---------HSFB2a(1)      <---------ARR14(2)                    --------->HSFC1(2)      --------->ARR14(2)                    <---------HSFC1(2)      <---------YAB1 -------ARR14(3)                  <----------ID1             <---------At4g35610 -------ARR11(3)  <---------GLK1(1)         --------->HSFB2a(1)   --------->CCA1(2)               <-- ------>ARR14(3) <---------ARR11(3)   ---------->DOF2      <-----------RAV1(2)      --------->LBD16 ------>ARR11(3) --------->ARR11(3)  --------->AtMYB61   <-----------HVH21       <---------At5g28300   ggtcttcgtaactggaatagatatcacaactaaaaaacaccaaaggagcttctatcagtcgtcagaagagatgatagtcttcttaccgcagaacagggat  23261500                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    -                      <---------ANAC58                                                              -                   <----------DOF2                                                                  -               --------->LBD16                                                                      <             <---------LBD16                                                                        -          <----------DOF2                                                                         <--    --------->At4g35610                            <----------DOF2                 --------->HSFB2a(2)    <---------At4g35610                       --------->HSFC1(2)                   <---------HSFB2a(2) <---------At4g35610  <---------ANAC58        <---------HSFC1(2)           ---------->DOF2     ------ -------AHL20(2)<---------MYB52(1)         ---------->DOF2                 ==========================   tttatctgctgtctttccggtctttcttgttgaaagtcttggtaacaaagcttctttacaaggttgtacttgagtcggaaagggtctggagccatctcag  23261600  Previous    Next  AGI:  At1g62800.1    Description:  ASP4 (ASPARTATE AMINOTRANSFERASE 4); catalytic/ pyridoxal phosphate binding / transaminase/ transferase, transferring nitrogenous groups. Identical to Aspartate aminotransferase, cytoplasmic isozyme 2 (ASP4) [Arabidopsis Thaliana] (GB:P46646;GB:Q9SI69); similar to ASP2 (ASPARTATE AMINOTRANSFERASE 2) [Arabidopsis thaliana] (TAIR:AT5G19550.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65506.1); contains InterPro domain Aspartate/other aminotransferase; (InterPro:IPR000796); contains InterPro domain Aminotransferases, class-I, pyridoxal-phosphate-binding site; (InterPro:IPR004838); contains InterPro domain Aminotransferase, cla Range:  from: 23257368    to: 23261128    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g62810.1    Description:  copper amine oxidase, putative. similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G43670.1); similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT4G12290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70301.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16983.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63652.1); contains InterPro domain Copper amine oxidase, N3-terminal; (InterPro:IPR015802); contains InterPro domain Copper amine oxidase, C-terminal; (InterPro:IPR015798); contains InterPro domain Copper amine oxidase, N2/N3-terminal; (InterPro:IPR01 Range:  from: 23261391    to: 23265631    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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