Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <-----------GT1                                                                 <---------AHL20(1)       -----------                            <-----------RAV1(2)                  --------->AHL20(1)   ---------->DOF2                     --------->AHL20(2)                          <---------AHL20(2)<---------------AGL15                     <---------ATHB51                            --------->AHL20(2)--------------->AGL15                     <---------AHL20(2)                    --------->ANAC58       --------->TOE2(3)                   --------->YAB1                          --------->ANAC58    <---------CCA1(2)             ----------->GT1<---------LBD16                ----------->GT1  <----------DOF2    ------   tttttagcaatatcagagtaaaaataattctcaggggcattttgacgaacacttagaaggcaagtaataaattttaaacttttatctcaaaagagtaaaa  23239700                                   ----------->RAV1(2)                                   --------->ZAT2                                   --------->At4g35610                                   <---------At4g35610                                   <---------ZAT2                               <-----------HVH21                            <---------ARR11(3)                            --------->ARR11(3)                                           ------>MYB46(1)  ---------->DOF2    <------ZmHOX2a(1)   <---------At4g35610               <---------ZAT2------>MYB83 >GT1  <----------DOF2--------->ZAT18 --------->At4g35610                 --------->ARR11(3) ---->DOF2  XXXXXXXXXXXXXXXXXXXXX>MIR2936--------->At4g35610     <----------DOF2     ------->TEIL  <-   agatgaaagctttgtgagagagaggacacagaccttcagctgcagcgaagactgagaattgtttcttcttttgtgagagcttggaagaacctagcccaat  23239800                                                           <------ZmHOX2a(1)                                                        <------ZmHOX2a(1)                    <------ZmHOX2a(1)                ------->PIF5            <---------GLK1(2)                        <-------PIF5      --------->DAG2          --------->LBD16    >>>>>>>>>TBF1    ---------->DOF2        ---------->DOF2            >>>>> --------HSFB2a(2)<---------TOE2(3)          <---------REM1(1)  <-----------------AGL1      <------ZmHOX2a(1)   acgagaagtacccagaaactgaggaattgaagaagaaatcgaagaagatgaagcacgaggaggaagacccagaaaggtagcacgatgagacagaggaaga  23239900                                                                                     <---------YAB1                                                                                    --------->AHL20(2)                                                                             --------->RRTF1(3)                                                                             --------->RAP2.3(3)                                                                             --------->RAP2.3(2)                                                                             --------->ANAC46                                                                             --------->RRTF1(2)                                                                             --------->DREB2C(2)                                                                             --------->RAP2.6(2)                                                                             --------->DEAR3(1)                                                                             <---------ATERF1(2)                                                                            --------->RAP2.6(1)                                                                            --------->RAP2.3(1)                                                                            --------->ERF1                                                                            --------->ORA47(2)                                                                            --------->RRTF1(1)                                              --------->AGP1                --------->ATERF1(1)                                       ------->GAMYB                       --------->At4g35610                                      <---------MYB55(2)                   ------>NtERF2                                      <---------MYB52(2)                   <---------ATERF1(1)                                     ------>MYB83                          --------->LBD16                                     ------>MYB46(1)                      ------->GAMYB                                    --------->MYB52(1)                    --------->ANAC46                                   --------->TOE2(2)                     --------->MYB46(3)                                   --------->TOE1(2)                    <---------ATERF1(1)                                  <---------MYB55(2)                   --------->ARR14(2) <---------AHL20(2)                                  --------->MYB46(3)         --------->GLK1(2)    --------->ICU4                                  <---------MYB52(2)        <---------GLK1(2)--------->ATERF1(2)                        <---------TOE2(3) ----------------->AGL2       <---------ARR14(2)--------->YAB1                        <---------TOE1(3)------->TEIL       <---------ARR14(2) <------NtERF2                        <---------YAB1--------->MYB46(3)    --------->ARR14(2)------>NtERF2 >>>>TBF1 <----------DOF2       --------->ANAC46    <<<<<<<ZML2   <xxxxxxxxxxxxxxxxsmallRNA(se3)   agaacaggtcgtctttgtgaaccattaagattacaaaccaacgaaccagaactagaactcgagattctcagagcatccgccgccatttttataaaaatcg  23240000                                                                                      --------->YAB1                                                                            ------->TEIL                                                                         --------->ANAC55(2)                                 ------>ZmHOX2a(1)                      <---------TOE1(3)                           <<<<<<<<<TBF1                                <---------TOE2(3)                   <---------ANAC58                                    <---------DOF5.7(2)         <<<<<<<<<TBF1  <<<<<<<<<TBF1                                  --------->MYB52(1)    <------------------------ANAC81                     ----------->HVH21<---------ANAC55(2)       -- <---------CCA1(2) <---------ANAC58     --------->ARR11(3)      <----------DOF2       --------->ANAC46   cttctatcttcttcttctcttgcttcttcttcttcctcttgggatattgaatcaattggtgacactctttggctaacgtatcacttactcgtaatctctc  23240100                                                                                       <---------MYB46(3)                                        --------->MYB52(2)                             <---------DEAR3(2)            *TSS                   <------NtERF2                                      <---------DEAR3(1)            --------->MYB52(1)   <---------ANAC46       <<<<<<<<<<MYB80               <---------TOE1(2)       <---------ANAC46          <---------ANAC58      <------MYB46(1)                <---------TOE2(2)     --------->ALFIN1            <---------ANAC58      <------MYB83                --------->O2   <---------ANAC58         <---------ANAC58           <---------MYB46(3)          <---------O2   <---------ANAC46         <---------ANAC58     ------->TEIL   <------------CBF   <---------TGA1a   <---------ANAC58  <----------DOF2  <---------ANAC46<---------AtMYB61            --------->TGA1a <- ------->SPL7       <---------DAG2 --------->ALFIN1  <---------MYB52(1)  <---------AHL20(2)        --   gtatggcttggggataacgaagccttttgggcttggcgtggtttgtttctgaaccgttggtttaaaaattgtttttttatttctctcgtcggttttaaaa  23240200                                                            --------->DEAR3(1)                                                        --------->TGA2(2)                                                        ----------->HVH21                                                       <-----------HVH21                                                       <-----------TGA1                                                      --------->bZIP60(2)                                                      <---------bZIP60(1)                                                      <---------O2                                                      --------->bZIP60(1)                                                      --------->ANAC55(2)                                                      --------->O2                                                      --------->TGA1a                                                      <---------TGA1a                         <------                                                      --------->ANAC55(1)                    <-------                                                      <---------ANAC55(2)                 <---------AHL20(2)                                                      --------->ANAC58                   --------->AHL20(2)                                                      --------->ANAC58          <---------ARR14(2)           --------->AHL20(2)                         --------->ANAC46          <---------GLK1(2)          ----------->TBP   --------->ATHB12         <-----------STF1           --------->ARR14(2) --------AHL20(2)          <---------AHL20(2)       <---------ALFIN1          --------->LBD16<------- ------->AHL20(2)          <---------YAB1       <------ZmHOX2a(1)           <---------LBD16  --------   tttatatggtctataaattgtctgaagtttttattggtccaaatggataaggagacacgtcaccgtctatgtgtttaatccggattttggattaattttt  23240300                                           <---------ICU4              <-----------GT1           <---                                          --------->ICU4          --------->AHL20(1)             <---                                        <---------ICU4            <---------AHL20(1)            -----                                       --------->ICU4             --------->AHL20(2)           <-----             <---------GLK1(2)         <---------ATHB12           <---------AHL20(2)      --------->AHL20(2)      <----------DOF2                  <---------ATHB51           <---------ARR11(3)      <---------AHL20(2) ---AHL20(2) --------->ARR11(3)        --------->AHL20(2)  ----------->GT1               --------->AHL20(2) --AHL20(1)  <---------ARR11(3)        <---------AHL20(2) --------->DAG2                 --------->AHL20(1) --AHL20(2)<---------TOE1(3)    <----------ID1           ---------->DOF2                 <---------AHL20(1) ->AHL20(2)<---------TOE2(3)  --------->MYB52(1)   ---------->DOF2--------->ARR11(3)     <---------AHL20(2)   ttttttttcttttaagatttttggtttagaaataagggcaaataattagtatctaaaggtaaagtgaatatattaacaatttcgattcaaatttattttt  23240400                                                      <---------AHL20(2)                                                 <------MYB83                                                 <------MYB46(1)                                               <--------P                                             <---------MYB46(3)     ---------->DOF2 ------ANAC58                         <---------TOE2(3)<---------YAB1      --------->ANAC58 ------ANAC58               <---------AHL20(2)<-------GAMYB       <---------AHL20(2) ----->ID1             <---------AHL20(2)   <---------AtMYB61     --------->AHL20(2) ------GT1           <----------DOF2  ---------->ID1  --------->AHL20(2)   --------->ANAC58   cgtttcagagaaattttagttttcttttattttatattttgtggttttggttggattaaaattccaaattaaaagacaatccatttaagtcatatattca  23240500                                                     <---------AHL20(2)                                             <---------ARR14(2)                                             --------->ARR14(2)                                          <---------ANAC55(2)                                  <-----                                          <---------ANAC58                                 --------->ANAC46                                          <---------ANAC58                        <----------DOF2                                          <---------ANAC55(1)                     <---------DAG2-----                    <---------ANAC46      <---------ANAC46             ----------->RAV1(1)------>ZmHOX2a(1)                    <---------ANAC58      --------->ANAC55(2)       <-----------GT1   <-----------GT1                    <---------ANAC58  <---------ANAC58     <---------ANAC46  <---------ZAT14   ------         <----------DOF2              <---------ANAC58     ----------->GT1   --------->ZAT14 --------   aatattgttcgatttttggattgcgttttttttttatatggattgcgtattttagttaatggtgtatatataacaacagtacagctttattcctcacaac  23240600  Previous    Next  AGI:  At1g62750.1    Description:  ATSCO1/ATSCO1/CPEF-G/SCO1 (SNOWY COTYLEDON1); translation elongation factor/ translation factor, nucleic acid binding. similar to mitochondrial elongation factor, putative [Arabidopsis thaliana] (TAIR:AT2G45030.1); similar to translation elongation factor EF-G [Glycine max] (GB:CAA50573.1); similar to Elongation factor G, chloroplast precursor (EF-G) (GB:P34811); similar to unnamed protein product [Vitis vinifera] (GB:CAO70318.1); contains InterPro domain Translation elongation factor EFG/EF2, C-terminal; (InterPro:IPR000640); contains InterPro domain Translation elongation factor EFG/EF2, domain IV; (InterPro:IPR005517); contains InterPro do Range:  from: 23237099    to: 23240112    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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