Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    --------->AHL20(2)                                    <------ZmHOX2a(2)                                   <---------ARR11(3)                                   --------->ARR11(3)                       --------->AHL20(2)                                   --------->ARR14(2)                       <---------AHL20(2)                                   <-----------ARR10                     <---------ICU4           ---                                   <---------ARR14(2)                   --------->ICU4       <-------             ----------->GT1      <------ZmHOX2a(1)<---------AHL20(2)   --------->AHL20(2)<---------AtLEC2 ---------------AGL15         --------->TOE1(2)   <---------AHL20(2)    <---------AHL20(2)<---------ANAC58 -------------->AGL15 <-----------GT1------>ZmHOX2a(2)                  <---------ATHB51  <---------ANAC58   aactagattgagaaatggagaaattcaccatacataggatcttagtcttgaattaatttcatattttgaagaaaataattaaacaaaattttgcatgtca  23230200         --------->ANAC58         --------->ANAC46                                                                  <---------ICU4         --------->ANAC58                                                              <---------AHL20(2)    --------->ARR11(3)                        <-----------GT1                         <---------AHL20(2)    <-----------ARR10                     <---------AHL20(2)      --------->AHL20(2)  --------->AHL20(1)    <---------ARR11(3)              ----------->GT1       <---------WOX13(1)       --------->AHL20(2) --------->YAB1           --------->YAB1 --------->ARR11(3)       <---------AHL20(1)  --------->AHL20(2) --------->AHL20(2)     --------->GLK1(2)<---------ARR11(3)       <---------AHL20(2)  <---------AHL20(1) ------>TOE2(3)        <---------GLK1(2) <---------AHL20(1)      --------->AHL20(2)--------->YAB1 ----HVH21         ---------->DOF2---------->DOF2   --------->MYB52(1)          --------->YAB1   cattaatatctaagccaaaaaaaaagaatcttaaggcaaagtatatatttacaataacggattgctattaaatttgaatcacgaataatataatcaattc  23230300                                                  --------->DEAR3(1)                                                  ----------->HVH21                                               --------->TOE1(2)                                              --------->MYB46(3)                                      <---------HSFB2a(2)                                      --------->HSFB2a(2)                                   <---------ARR14(2)                                               -                                   --------->ARR14(2)                     <---------ETT(1)        <--                                --------------->AGL15                     --------->At1g77200    <---                                <---------------AGL15               <---------------AtSPL3       <---                               ----------------->AGL2       ------->GAMYB--------->DEAR3(2)      ----                               ----------------->AG         --------->DEAR3(1)                   ----                               ----------------->AGL1      --------->MYB46(3)                  <-----                               ----------------->AGL3      --------->DEAR3(2)                  ======                        <---------ZAT14--------->LBD16   --------->ARR14(2)                    <-----              ----------->RAV1(2) <---------CCA1(2)      <---------ARR14(2)   ------>NtERF2    <-----             ------->TEIL    <-----------GT1<---------ARR14(2)     <------------------SPL14  <-------   gttggacactatgtgtacctggtgtctgtagtttccatatccagaagaaccagcgacgagaaccgcccatcttgtaccgacaccatcttcgtcttggtca  23230400      <---------At4g35610                              --------->ANAC58      --------->At4g35610                              --------->ANAC58     --------->MYB52(2)                           ----------->HVH21   <--------P              <---------ARR11(3)    <-----------HVH21 -------->LBD16            --------->ARR11(3)   --------->O2 -------LBD16              --------->GLK1(2)------>MYB46(1) ------ZAT2               <---------GLK1(2) ------>MYB83 <------NtERF2 ------At4g35610   <------NtERF2           --------->MYB55(1) ----->At4g35610 --------->ETT(1)         ----------->HVH21 ----->ZAT2      <---------ETT(2)         --------->DEAR3(1) ----WRKY38(1)  --------->RAP2.6(3)       --------->MYB46(3) =========================RAV            <--------------OsCBT                            --------->ARR11(3) ----WRKY12 ------>ZmHOX2a(1)--------->ATHB12   <---------O2             <---------MYB52(2) ------RAV1(2)<-----------RAV1(1)        --------->MYB46(3)        ---------->DOF2 >>>>>>>>>TBF1 ----HVH21<-----------------AGL1         --------->DEAR3(2)    ------->TEIL--------->MYB52(1)   gccgggttagcttcctctgtcggcataagaatctttggctcgaaccgaccgcgtgactcggcatgaaccaaaagaactaacagaagaagaagagctggtc  23230500                                                                                            <-------GAMYB                                                                                           <------MYB46(1)                                                                                           <------MYB83                                                                                           ----------                                                                                    ---------->DOF2                                                                                 --------->ANAC58                                                                                 *TSS   <------ZmHOX2a(1)                                 ---------->DOF2     <----------DOF2           ---------->DOF2                       <------NtERF2                 <---------DAG2          <---------YAB1<---------MYB46(3)                       --------->At4g35610 ---------->DOF2        ---------->DOF2--------->ANAC58----   tgaaatagcaagacttagccatggcagcgagaaacaaaagagagagaaagagaggctttttgagagaataaagagaactataaaagcaaaggatggttag  23230600               --------->AHL20(2)               <---------AHL20(2)              <---------AHL20(2)                                       <---------At4g35610              --------->AHL20(2)                                       --------->O2              --------->AHL20(1)                                       <---------ZAT2    --------->ANAC58           <--------ATHB1                                  <---------YAB1                --------->ANAC58           <---------ICU4                                 <---------AHL20(2)           ---------->DOF2           --------->ATHB51                               <---------AHL20(1)   <---------YAB1           --------->AHL20(2)                  <------------CBF       ------>NtERF2---------->DOF2           <---------AHL20(2)               ------------>CBF   <---------AHL20(2)<---------AHL20(2)          --------->ICU4       --------->AHL20(2)         --------->AHL20(1) <---------ICU4    ----------->GT1            --------->AHL20(1)        --------->YAB1----------->RAV1(2)          -    <---------ZAT6  <-----------HVH21       <---------ATHB12  --------->AHL20(2)--------->AHL20(2) -- ->GT1  --------->YAB1         <---------AHL20(1)        --------->AHL20(2) <---------YAB1         <- -------->CBF <---------AHL20(1)<---------AHL20(2)       <---------AHL20(2) --------->ICU4     ------   acaatggtgttaataatttatttgtcaccaaaatataatcaaacaaatcaattgtctaattatatttaatgccacctgattattaaaaagaaagcactta  23230700                                                                                      <---------AHL20(2)                                                                                     --------->AHL20(2)                                                                                  <---------AHL20(2)                                                                                  --------->AHL20(2)                             <---------AHL20(2)                                   <---------ICU4                             --------->AHL20(2)                                  --------->ICU4           ------->MYC3     --------->AHL20(2)                             ----------->GT1           ------->MYC2     --------->AHL20(1)                           <---------ANAC58           <-------MYC3     <---------AHL20(2)                           <---------ANAC58           <-------MYC2     <---------AHL20(1)                           <---------ANAC46 <---------TOE1(3)      <---------AHL20(2)                               <---------ANAC55(1) <---------TOE2(3)      --------->AHL20(2)                               --------->ANAC55(2) --------->DOF2      --------->YAB1          ------>ZmHOX2a(1)          <---------TOE2(3) ------->AHL20(2)   <---------YAB1<---------AHL20(2)                   <-----------GT1--------->AHL20(2) --------AHL20(2) --------->YAB1 <---------AHL20(2)                  <---------AHL20(2)     <-------- --->AHL20(2)  <----------DOF2   --------->AHL20(2)                 --------->YAB1--------->ATHB51   attaaagttagcatatgcttttatgataaatttaattttataaactcctatacatattataccgatgtaattttaacgtgttaattatttaattttgata  23230800                                                                                <---------AHL20(1)                                                                    --------->ETT(2)                               <---------AHL20(2)                   <---------ETT(2)              ---                               --------->AHL20(2)                  --------->DDF1           <--------                            <---------AHL20(2)      <---------AHL20(2)          --------->ARR11(3)<--                           --------->AHL20(2)       --------->AHL20(2)          --------->AHL20(1)<--    ------>ZmHOX2a(1)    --------->TOE2(3)         --------->YAB1<---------bZIP60(1)     --------->KAN4(1) -YAB1                <-----------GT1              --------->AHL20(2)   --------->ATHB12 <---------KAN4(1)   tgtttcctctaaaactaagttatattacattaaataaatataaaaaatacgaattaaaatggttgtgatgtcgacgattgaatattttggaatattactc  23230900                                                                                  --------->MYB52(1)                                                                               --------->ANAC55(1)                                                                               --------->ANAC46                                                                            --------->ZAT18                                                                            <---------ZAT14                                                                            <---------ZAT18                                                                            --------->ZAT14                                                                          --------->REM1(2)                                                                        ------->MYC2                                                                        ------->MYC4                                                                        <-------MYC3                                                                        <-------MYC4                                           ======================================MYC_MYB                                           ------->GAMYB                <-------MYC2           ------                                        --------->MYB52(1)             --------->ANAC55(2)  <--------                                        ----------->RAV1(1)            --------->TGA1a      <--------    ------>ZmHOX2a(2)              ----------->RAV1(1)                 --------->O2      --------->MYB46(3)  <---------ARR11(3)              --------->ANAC46 --------->ANAC58    <---------ANAC55(2)--------->ANAC46 ------>At4g35610                <---------HSFB2a(2)                   <---------O2    --------->PCF2 ---GT1  --------->AHL20(2) <---------At4g35610    --------->AtLEC2    <---------TGA1a <---------TCP20 -------At4g35610           --------->At4g35610    --------->ANAC58   ------------>OsbHLH66 --------- -------ZAT2   --------->MYB52(1)--------->HSFB2a(2)      --------->YAB1------->MYC3   ------->TEIL   tgctgatctcataaaatcaacgaattggtctgcttcgcgacacaacagagaacatgcaaattatagtccgaacacgtgtacacttaatggacccacaacc  23231000                            --------->AHL20(1)                            --------->AHL20(2)       <-----------GT1      <---------AHL20(1)     --------->AHL20(2) <---------AHL20(2)     --------->ICU4            <---------AHL20(2) <---------YAB1     --------->ZAT18               --------->AHL20(2)                 ----------->GT1 --->MYB46(3)      ------->GAMYB                 <---------AHL20(1)                 --------->YAB1  - -ALFIN1<---------At5g28300 <---------AHL20(2)  --------->YAB1                  <---------AHL20(2)<-- -MYB55(2)        --------->ANAC46       --------->GLK1(1)                      --------->AHL20(2)<XX >MYB46(3)  <---------MYB52(1)        --------->LBD16--------->ICU4    <-----------GT1      ---------   gatattatttcaccgttacaacggcactaattaattaacccagagctctaaaataattttgaaattagactattaacccagtttaattagaaaatagtaa  23231100  Previous    Next  AGI:  At1g62710.1    Description:  BETA-VPE (vacuolar processing enzyme beta); cysteine-type endopeptidase. Identical to Vacuolar-processing enzyme beta-isozyme precursor [Arabidopsis Thaliana] (GB:Q39044;GB:Q93VS7;GB:Q9SI79); similar to GAMMA-VPE (Vacuolar processing enzyme gamma), cysteine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT4G32940.1); similar to Vacuolar-processing enzyme precursor (VPE) (GB:P49045); similar to Vacuolar-processing enzyme precursor (Pv-VPE) (GB:O24326); similar to Vacuolar-processing enzyme precursor (VPE) (GB:P49042); contains InterPro domain Peptidase C13, legumain; (InterPro:IPR001096) Range:  from: 23227539    to: 23230581    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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