Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     --------->YAB1                                                                                   --------->TOE2(3)                                  >>>>>>>>>GATA-1                         --------->WOX13(1)                         --------------->AGL15                           <---------AHL20(2)        <-                        ----------------->AGL3                           --------->AHL20(2)       <--                  --------->ARR11(3) --------->DAG2             ------->GAMYB--------->YAB1   -------                  <---------ARR11(3)---------->DOF2          ----------->RAV1(1)  ----------->GT1 ---   ggctcataaccaagtttcaacatcttgccaagaatagataaagctagagagacttgaaaacagcaacagaaacaattaatcacaatgttaaatgtataaa  23213200             --------->ANAC46        <---------ARR14(2)        --------->ARR14(2) -----ZmHOX2a(2)                   ---------->DOF2                               <---------At4g35610 -------ARR11(3)                 --------->LBD16                                 --------->At4g35610 --->DOF2   --------->LBD16     ----------------->AGL1             <-----------GT1               <<<< ------>ARR11(3)                --------------->AGL15            --------->AHL20(2)--------->WOX13(1)   gatcatttcgaatccccaaaacttccatcttcttccccaaagagataacaacatcatacttcttcaatttaacaatggcactcagcaatctattgaaatc  23213300                              <-----------HVH21                       --------->WRKY38(1)                                                       ----             <----------ID1  --------->bZIP60(2)                                     <---------ANAC58         ---------->DOF2<---------WRKY18(1)  --------->WOX13(1)       --------->ANAC46           ---- <<<<<<<<<<<<<LFY      ----------->HVH21   <------ZmHOX2a(2) <----------DOF2         <---------ANAC58   gacaatggaaggaaagggacgagacttgaccatgtcactgaatagatcaatcgcatcgtttagctttatatcacgaagccgagttttgcttaatctctct  23213400                                                 --------->ARR14(2)                                           ------->GAMYB                                           ----------->RAV1(1)                                          ----------->HVH21                                          --------->ANAC58          <---------ALFIN1                --------->MYB46(3)          --------->AtMYB61               --------->ANAC58         --------->MYB46(3)           <---------ZAT2       --------->AtMYB61              --------->ZAT2       --------->ANAC46              --------->ANAC58       <---------ALFIN1              --------->ANAC46<---------ZAT14              --------->ARR14(2)      --------->MYB46(3)             --------->ANAC58--------->ZAT14              <---------ARR14(2) ----->ANAC58----------->HVH21   --------->SPL7  <---------ARR14(2)   <------ZmHOX2a(1)    <--------- ----->ANAC58----------->TGA1  <---------SPL7   <------ZmHOX2a(1) --------->TOE1(2) <---------LBD16<-   cgcaaatcaccaccactgacgcttgaagaagctcgtacccagcaacgacaggaactgcaatggctaaacgaaggagaagaagcagttctgggtttaccat  23213500                                 <------NtERF2                                <-----------HVH21                                ------>NtERF2                                <-----------TGA1                                <---------RAP2.6(3)                                          ------>ZmHOX2a(1)                               --------->ANAC46------>ZmHOX2a(2)                          ------>ZmHOX2a(1) --------->HSFB2a(2)           --------->RAP2.3(3)                                    --------->GLK1(2) <---------HSFB2a(2)           --------->DEAR3(1)                                     <---------ARR14(2) --GT1              <---------GLK1(1)         <---------GLK1(1)                <------------CBF------ --------HSFB2a(2)  --------->GLK1(1)     <---------ATHB12                    *TSS    --------->ARR14(2)   tctcgagaagattgcgatgaagaaatctcttcgccgtcatcgcaatcgatctctgcatttcgatgttcgatttttgtctccgattgagaatcctcctaca  23213600                                                                    <-----------GT1                                                                <---------YAB1 --------->WRKY18(1)                                                               --------->ARR11(3)                 --------->CCA1(2)          --------->LBD16    --------->AHL20(1)        <------------CBF                    ----------->GT1    <---------ARR11(3)      <---------YAB1      --------->YAB1   <---------ANAC46    <---------AHL20(1)   ----------->GT1 <---------ANAC46       <---------LBD16     <---------AHL20(2) --->REM1(1)---------->DOF2   --------->MYB52(1)      ----------->GT1        --------->WOX13(1)   acgaagtgtttattgaaagagacgggaatgaaaaccggtttagttccggttaaattcagtataaatatttttgctatatcagtcaaaccgaatcgaatcg  23213700                                                                                                 ----                                                                                      <--------------                                                                                      ---------------              --------->ANAC58                  <------ZmHOX2a(1)                    ================              --------->ANAC58                 <----------ID1                        <---------------          --------->ANAC46               <---------MYB59                             <---------------          --------->ANAC58              ----------------->AGL1                       <-----------GT1          --------->ANAC58              ----------------->AG   <---------ANAC58      <---------------   <---------ARR14(2)                   =============================================================   --------->ARR14(2)           --------->ANAC55(2)            <---------ANAC58      <---------------   aatcgaatccaaacgcaagtaattgcattaactcaagtgattaccgaataggaccaataggttttgcttcgaaatttcagtttattttctcaatttggat  23213800                                                <---------------AGL15                                                <---------ANAC58                                                <---------ANAC46                                                <---------ANAC58                                               <-----------------AGL1                                               <-----------------AGL2                                               ----------------->AGL1                                             <---------ARR14(2)                                             --------->ARR14(2)                                           <------MYB46(1)                                           <---------DEAR3(2)                                           <------MYB83    <---------------AtSPL8              <---------MYB52(1) ------>DOF2                          <---------DEAR3(2) -AGL15                               <------MYB46(1) >AGL15                               <------MYB83<---------MYB52(1) ===============================================================MADS_MADS --AGL3                              --------->MYB59            <------MYB83           <---------AHL20(2) --AGL2                            <---------MYB52(1)           <------MYB46(1)       <---------AHL20(2) --AGL1                          <---------MYB46(3)--------->ARR14(2)          <---------TOE2(3) =MADS_MADS                      <---------DEAR3(2)<---------ARR14(2)       <-----------GT1 --AG                      <-----------GT1--------->MYB59      --------->MYB59 <---------TOE1(3)   aaagaacaagtacaatatggtttatgttttaacatcggttcggttcggttccgtttctggttaagtaggttttggatttttcaggttttttattttggga  23213900                                                                   <------MYB83                                                                <---------MYB52(1)                                                              <---------MYB46(3)                                                              <------MYB83                                                              <------MYB46(1)                                                         <---------YAB1                                                        <---------TOE2(3)  <---------ARR14(2)               --------->ZAT18                        <---------AHL20(2)   --------->ARR14(2)               <---------ZAT14                   <<<<<<<<<<WRKY38  <------MYB46(1)          ---------          ----------->HVH21                      <<<<<<<<<<WRKY43 --------->MYB59         <---------MYB52(1)       --------->ZAT6                            <<<<<<<<<<WRKY26 <---------AtMYB61      <-------GAMYB    <-----------GT1                    <-----------------AGL1--------->MYB59          ---------->ID1   aaatagttaccactgaccacactaaaactaaaatagtagggactggttttggtcaatttatgtttggttaggtttcaaatccgattttgtccgttagttt  23214000                                       <---------ZAT6                                  <-----------HVH21                                 <---------ZAT6                               <---------ANAC58                  --------->DAG2                               <---------ANAC46                 ---------->DOF2                               <---------ANAC58            ---------->DOF2 >MYB52(2)                --------->ATHB12            <---------TOE2(3) ---------->DOF2   gttttggttatccaaattgatcaccccttcattgagtgtcagtgttaacaaaaattaagatgaaagaaaagtaccaaagtactgacaaaataagtcgtca  23214100  Previous    Next  AGI:  At1g62680.1    Description:  binding. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63130.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 23210755    to: 23213578    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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