Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 ------>ZmHOX2a(1)                           <---------ARR14(2)                           --------->ARR14(2)                           <---------ARR11(3)                           --------->ARR11(3)                         ----------->HVH21                          <----------TaMYB80                        ----------->GT1         ---------->DOF2  <---------GLK1(1)                         <---------ANAC58        ------->GAMYB     --------->GLK1(1)                         <---------ANAC58        --------->AtMYB61---------->TaMYB80                     ---------->DOF2      -------->P     <---------LBD16 <-----------RAV1(1)  --------->At4g35610     --------->WOX13(1)  <---------ARR14(2)            <---------At4g35610                        --- ->TEIL--------->MYB46(3)--------->ARR14(2)            --------->At4g35610                       <---   atctgatcaaccaaagctacagcctcggatatcctcttactgtggcaatacccattgagcagcgaagaaagcgtgacaatattgggctcatagccaagtt  23209900                                                                                          <------ZmHOX2a(1)                                                                                      <---------YAB1                                                                                    <---------ICU4                                 <---------At4g35610                               <---------YAB1                                 --------->At4g35610                            --------->ICU4                                 <-------GAMYB            --------->WOX13(1)    <---------YAB1                      --------->ANAC58                  <---------MYB52(1)    ----------->GT1                      --------->ANAC58                ----------->GT1       <---------ZAT14 <-------- ------>YAB1        ---------->DOF2         <---------ETT(2)         <---------ZAT6--------->ICU4 <-- ----TEIL        --------->At4g35610        --------->ETT(2) --------->YAB1 --------->ZAT14 ---------   tcatcatcttgccaagaacagctaaagcaagagggagttgagagcgtcgacaaaaacagttaatcaaaatactgtaagtatagtgattatgaggaattcc  23210000                                                                        <---------At4g35610                                                                        --------->At4g35610                        <---------At4g35610                           <---------ZAT14                        --------->At4g35610                           --------->ZAT14                  ------>NtERF2                                      <---------MYB52(1)        <---------At4g35610                                  --------->ANAC46       <--------ATHB1        --------->At4g35610                                  --------->ANAC58       <------------ATHB5       ------->TEIL     --------->CCA1(2)                    --------->ANAC58       --------->YAB1 -GLK1(1)  --------->ZAT2                                 --------->ZAT18           --------->ATHB12 -------TOE1(2)  --------->DEAR3(1)                       --------->ZAT14          --------->ICU4<--- >GLK1(1)  --------->At4g35610                            <---------ZAT18          <---------ATHB12   caagttttgcatctgctcgccgagagagatgacaacatcgaacttgttcatcttagcaattgcactcaacagtttgctgaactcaatgatggaagggaag  23210100                     ------>MYB46(1)                     ------>MYB83                     --------->MYB52(1)      --------->TOE2(3)                   --------->MYB46(3)        <----------DOF2                            <---------ICU4                   --------->DEAR3(1)  --------->At4g35610                              --------->YAB1                  --------->ANAC46     <---------At4g35610                             <---------YAB1        <---------WRKY18(1)        <-----------HVH21                                   --------->ICU4       --------->WRKY38(1)         <-----------TGA1       <---------At4g35610          <---------ATHB12       ----------->HVH21     ----------->RAV1(1)      --------->ANAC46               --------->YAB1 -------ID1     <-----------GT1 ------->GAMYB--------->TOE1(3)            <---------GLK1(2)      <---   ggacgagacttgaccatttcaccgaacagagcaacagcgtcatctaactttaattcactcagcccatttctactcagtttctctctgtaatcataactag  23210200                                 --------->DAG2                                ---------->DOF2                            <----------ID1                           ----------->GT1                           ------------------------>ANAC81                          --------->DAG2                     --------->LBD16  ----------->GT1                    --------------->AGL15                    <---------HSFB2a(2)        ---------->DOF2  ---------->DOF2 -------->P         --------->HSFB2a(2)                                                           <-- ------ZAT6        ----------------->AGL3      --------->At4g35610            --------->At4g35610 <--   tcttaccagagaaagctcgtctccagaaaaaggaaaaagagggagaaacagttgcagcattacctctcaccacaagactccgatgaacaaatctcttcgc  23210300                                                                                                  ---                       ------>ZmHOX2a(1)                                                     <-------                       <---------YAB1                                                  --------->TOE1(3)                      --------->TOE2(3)                                                --------->TOE2(3)                   --------->ARR11(3)                                               ------>MYB83 <---                   <---------ARR14(2)                                             ------->GAMYB -----                   <---------ARR11(3)                      <---------LBD16        <---------MYB59----                   --------->ARR14(2)             <---------ARR11(3)              --------->AtMYB61 -----GAMYB       <---------GLK1(1)             --------->ANAC58                 --------->MYB46(3) -------At4g35610 --------->GLK1(1)             --------->ANAC58     ----------->GT1------>MYB46(1) -   agttgatgcaatcgcaaacgatatcctcattctcgatttgatttcttctcaagctctctgattcggaagctctgtaaaattcaaccaaaccctaaacgaa  23210400     <-----------HVH21 --------->AtMYB61                                                         <---------REM1(1) <---------ALFIN1                                                        <XXXXXXXXXXXXXXXXXXXXXMIR850 ------>AtMYB61                                                         <-----------RAV1(1) --MYB52(2)                                                           --------->YAB1               <- ------MYB55(2)                 <------NtERF2                         <---------ICU4               <- -->TEIL                   <---------TOE2(3)                         --------->ICU4                <- ----->MYB46(3)            --------->DAG2                          <---------ICU4       --------->ICU4 -------->MYB46(3)  ----------->GT1                             ----------->GT1        <----------DOF2   ccaccactgtgagagactgtgagagtaataaggcagagagagagagagtgaatgttgaaaccggtttagtaattatgttgtagtctgggcattatcggtt  23210500                                                           --------->ANAC58                                                           --------->ANAC58                                    <------------CBF       ------>MYB83                                   <--------ATHB1          ------>MYB46(1)              <---------ATHB12     --------->ATHB12      ---------->DOF2       <-----------GT1            --------->ICU4         --------->MYB46(3) --------ANAC46                   <---------YAB1         <---------MYB55(2) --------ANAC58       <---------ANAC58        ----------->GT1                               --------- --------ANAC58       <---------ANAC58----------->GT1   --------->ANAC46 ----------->GT1 --------->REM1(1)   tgcgtttttaaaccgaatcaagaagcttgagagagaatgattgtaaatttgtaattccaccaagcgagaatagaagagtagaaactagtctacaacaact  23210600                                                                                                    -                             <---------HSFC1(2)                                              <-------                             --------->At4g35610                                            <--------                             <---------At4g35610                                         <---------WOX13(1)                             <---------HSFB2a(1)                                       --------->YAB1                             --------->HSFC1(2)                                        <---------ICU4                             <---------ZAT2                                           <---------ATHB51                           <--------P                                                 <---------ATHB12                      --------------------->WRI1                                      --------->ICU4<                  <-------MYC2                                                        <---------YAB1-                  <-------MYC3                                                     ------------>ATHB5                  ------->MYC3                                                 <----------DOF2      -                  ------->MYC2  <-------TEIL                                  <---------DAG2<--------         <-----------HVH21<---------MYB52(1)       --------->DEAR3(1)   <----------DOF2-------->ATHB1 <-------TEIL    <---------ANAC58               <---------ALFIN1     --------->ARR11(3)<--------ATHB1 >MYB46(3)       <---------ANAC58     ------>ZmHOX2a(1)              <---------ARR11(3)--------->ATHB12   agatgcatcaaggtcagaaacgtgcttcggtagcttcgtcctcccattcaacaccgtctaacaatatagaatacctttagccttttcaatgattgctttg  23210700              --------->GLK1(2)             <---------ARR14(2)             --------->KAN4(2)            --------->HSFB2a(1)            <---------KAN4(1)       --------->YAB1  --------->LBD16 <---------------AGL15 --------------->AGL15 --------->LBD16 --------->ANAC46<---------YAB1          <------MYB46(1) ---------------->AGL1                   <------MYB83 ---DOF2    <---------HSFB2a(1)         --------->MYB59 -ANAC58    --------->KAN4(1)         <---------MYB52(1)                  <---------ANAC46 ---------HSFB2a(2)              ----------->RAV1(1)                      <---------ANAC58          < ---------------->AGL3           --------->MYB52(1)          <-----------GT1                 <------- -------->HSFB2a(2)             --------->ANAC46    --------->ANAC58      <---------ANAC58  <-------GAMYB -ANAC58   <---------KAN4(2)  --------->ANAC46      --------->ANAC58 --------->ATHB12   <-----------HVH21   ttcccgaaattagaatattctgattaaaacttacacaacagtttggtttttcttacgaaaattttacaacttcattgcttacaaattagttgtcagttat  23210800  Previous    Next  AGI:  At1g62670.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G62930.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63130.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 23208438    to: 23210330    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g62680.1    Description:  binding. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63130.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 23210755    to: 23213578    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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