Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <---------At4g35610                                                                   <------NtERF2                                                                   --------->At4g35610--------->AHL20(1)                                           --------->ANAC58       <---------DEAR3(2)  <---------ARR11(3)                                           --------->ANAC58       ------>NtERF2   --------->YAB1                                         ---------->DOF2         <---------At1g77200  --------->ARR11(3)                   --------->YAB1     --------->At4g35610        <---------DEAR3(1)   <---------AHL20(1) ->HVH21          <-------TEIL--------------->AGL15   --------->CCA1(2)        >>>>>>>>>>WRKY26   tgctgggctcatagccgagtttcatcatcttgccaagaagagctaaagcaagagagatttgagagcgtcggcagaaacagttgatcaaaatattgtaagt  23182500                                                             <---------DAG2                                                             <----------DOF2                                                      --------->TOE2(3)                                             --------->At4g35610                                             --------->CCA1(2)                    --------->ANAC58      --------------->AtSPL8------->TEIL     <---------At4g35610                  --------->ANAC58   atatagaccatgtacaatttctaacctctgcatcttctcacctagagagatgacaacatcaaactttttcatcttagcaatggcactcaacagtttattg  23182600                                            --------->MYB46(3)                                          ------>MYB46(1)                                          ------>MYB83                                        --------->MYB46(3)                                        <---------MYB46(2)                                        --------->DEAR3(1)                                        <---------MYB55(2)                                       <------NtERF2                                       --------->ANAC58                                       --------->ANAC58                                  --------->ANAC46                                  --------->ANAC58                   <------ZmHOX2a(1)  ------>NtERF2                  <----------ID1  --------->ANAC58                            <-----------GT1--------               ---------->DOF2    --------->AtLEC2                         --------->ANAC55(2)            <------MYB46(1)  <---------WRKY18(1)                           <---------ANAC55(2)            <------MYB83    ----------->HVH21                         <---------CCA1(2)      <-------  <<<<<<<<<<<<<<<<<LFY      --------->WRKY38(1)             --------->At4g35610     <---------CCA1(2)   aactcaacaatggaaggtaaaggacgagacttgaccatgccaccgaacaaaccaattgcatcatctaacttcatatcatgtaacccatttctcaatatct  23182700                                                        <------ZmHOX2a(2)                                                        ====================HOX2a_HOX2a                                                        ================================HOX2a_HOX2a                                                       <---------ARR11(3)                                                       --------->ARR11(3)         --------->AtMYB61                           --------->ICU4         <---------ALFIN1                          ---------->DOF2                                  -      <---------ICU4                             --------->LBD16                                    <      <-----------GT1                           --------->ANAC58                             <-------      --------->YAB1                            --------->ANAC46                             --------     --------->MYB46(3) --------->DAG2          --------->LBD16                         <----------DOF2 ->ARR11(3)            ---------->DOF2          --------->ANAC58                 <------ZmHOX2a(1)  < --ARR11(3)    --------->ZAT6                  <---------LBD16       <------ZmHOX2a(1) <---------DAG2   ctctgtaatcaccactgccactagaaaaagctcgtccccagtaacacatcccgcaaagatcaatggaagaaggagcaattcgaggattacctttcccctg  23182800                                                                <---------HSFB2a(2)                                                        ------>ZmHOX2a(1)                                                     <------ZmHOX2a(2)                                                    --------->ARR14(3)                                                    <---------ARR14(3)                                                    <---------ARR11(3)            <---------GLK1(2)                                                    <---------GLK1(2)         --------->At4g35610                                                    --------->AGP1            <---------ZAT2     <---------At4g35610                            <---------ARR14(2)        --------->ZAT2     --------->At4g35610                           <---------GLK1(1)          <---------At4g35610 --------->GLK1(2)                    <---------ALFIN1------>ZmHOX2a(2)       ----------->RAV1(2) -------->ARR14(2)                   <---------ZAT14--------->ARR14(2)      <-----------RAV1(2) ---------ARR14(2)                   --------->ZAT14--------->ARR11(3)   <---------ANAC58 --LBD16                         ------->TEIL     ----------->ARR10      <---------ANAC58 --->RAV1(2)              <------NtERF2   --------->ANAC58      --------->HSFB2a(2) ---------GLK1(2)       <---------DEAR3(1)--------->ANAC58     <-----------------AGL1   aagattccgatgaacaattctactcgtcgtcgatgaaactacactcgaaatcgagatcctcatcttctcgatttggcttcagctgattctcaatctcact  23182900                                        --------->ARR11(3)                                        <---------ARR11(3)                       ------>MYB83  <-----                             --------->ANAC46            <---------GLK1(1)       ------>MYB46(1)-----                            <---------LBD16         <---------MYB52(1)           --------->MYB52(1)                           <---------ALFIN1        ----------->GT1             <---------MYB46(2)<---                          --------->ZAT14 <-----------------------TaNAC69(2)   <---------MYB59<------             *TSS         <---------REM1(2)<---------ANAC55(2)                ----------------->AGL1     ------>ZmHOX2a(1)    <---------ZAT14--------->CCA1(2)              --------->ICU4       --------   ctcactcctctctgcaaatcgcaaaccctacacggagagatagatatgtaaaccggtagaattctggtttagaactgattaccaaaccggtttactaacg  23183000                                                            <---------ANAC46                                                            ----------->GT1                                                           <------NtERF2 ----YAB1                                              --------->ANAC46 ---->ATHB12--------->ZAT18                            --------->ANAC58        <------ZmHOX2a(1)    < ---------CBF------>NtERF2                    --------->HSFB2a(2)  ------------>CBF                 < ---TOE2(3)<---------ANAC58            <---------ALFIN1--------->ANAC58     <---------LBD16        <- ->MYB52(1)<---------ANAC58         --------->ZAT6 ---------->DOF2<-----------GT1           ---------   attgaatttcgaagcgggccaaaactgttttgggacttccactaccctctagataaaacgcagcgtttaaacaatttctcaggaatttgtttttgttttt  23183100                <---------ANAC58                <---------ANAC58                <---------ANAC46                                                         ----------->GT1                --------->ALFIN1                                                         <---------ANAC55(2)              <---------ANAC58                                                       --------->GLK1(2)         <---------O2   <-------TEIL                                                 --------->ARR14(2)         <---------bZIP60(2)                                                         ------->TEIL         <---------ANAC58                                                           <---------GLK1(2)         <---------ANAC46                                                           <---------ARR14(1)         <---------ANAC58                                                        <---------TOE2(3)  <------------CBF   <---------MYB46(3)                                         <---------DOF5.7(2) ---------YAB1<---------ANAC58                                                --------->DOF5.7(2) ---------TOE2(3) --------->ALFIN1                 ---------->DOF2           --------->TOE2(3)     << ----------GT1<---------ANAC46            *TSS  --------->YAB1               --------->TOE1(3)     >> ->ID1<-----------RAV1(1)               ----------->RAV1(1)           <-----------GT1<---------ARR14(2)   ttaacattgtgtcgtggtgtgtgtggttcatgagtttttgggccacatatttataaagaggccgtagtatattcaccatcgttaacgaatctcgtaaaaa  23183200                                                                  --------->LBD16                                                                --------->RAP2.3(1)                                                                --------->ATERF1(1)                                                                <------NtERF2                                                                <---------LBD16                                                               <---------ATERF1(1)                                                               ------>NtERF2                                                              --------->RAP2.3(2)                                                              --------->RAP2.3(3)                                                              --------->DEAR3(1)                                                              <---------ATERF1(2)                                                              --------->ATERF1(2)                                                             --------->MYB46(3)                                                             --------->DEAR3(2)                                                             <------NtERF2                                                             --------->ORA47(2)                                                             <---------ABI4(2)                                                             --------->RAP2.3(1)                                                             --------->ERF1                                                             --------->ATERF1(1)                                                             --------->RAP2.6(1)                                                            --------->At4g35610                                                            --------->ZAT2                                                            ------>NtERF2                                        ----------->HVH21   <---------ATERF1(1)                                       ------->MYC3         <---------RAP2.3(1)                                       <-------MYC3         --------->ABI4(2)                                       ------->PIF5        --------->ARR14(2)                                       <-------MYC4        <---------ARR14(2)                                       <-------MYC2       --------->ATERF1(1)                                       ------->MYC4      <---------ATERF1(1)                                       <-------PIF5     --------->DEAR3(1)                                      --------->PIF3(3)<------NtERF2                                      <---------PIF3(3)<---------LBD16                                      --------->TGA1a  --------->ATERF1(1)                                      <---------O2     --------->RAP2.3(1)                                      --------->ANAC46<---------ATERF1(1)                                      <---------TGA1a ------>NtERF2                                      ================MYC_MYB--------->RRTF1(1)               ======================HOX2a_HOX2a      <---------RAP2.6(1)               ------>ZmHOX2a(1)      <---------bZIP60(2)--------->LBD16              --------->TOE2(3)       ===============MYC_MYB<---------At4g35610      <---------ARR11(3)              <---------ANAC58   --------->ANAC58     <---------RRTF1(1)         <------NtERF2              <---------ANAC58   --------->ANAC58     <---------RAP2.3(1)       ------>NtERF2          --------->DEAR3(1)     --------->ANAC46     <---------ERF1          <------NtERF2         --------->ATERF1(1)  <------ZmHOX2a(2)      --------->DEAR3(1)       ------>NtERF2   <------         <------NtERF2   <---------ATHB12    <-------GAMYB<------NtERF2      <---------ATERF1(1)    <        <---------ATERF1(1) --------->At4g35610      <---------DEAR3(1)      <---------RAP2.3(1)   <-        ------>NtERF2   ------>MYB83  --------->O2   <---------RAP2.3(2)    <------NtERF2<-------TEIL        <---------RAP2.3(1) <---------At4g35610     --------->RAP2.3(1)     <---------RAP2.3(2)    <-       <---------RAP2.6(2)--------->YAB1--------->ALFIN1<---------DEAR3(1)  <---------DEAR3(1)-------  --------->MYB52(1)    ------>MYB46(1)------->MYC2<---------RAP2.3(1)      --------->ATERF1(1)  <--- <<<<<<<<<<<<<<<LFY    --------->WOX13(1)------------>AtMYB77--------->DEAR4(2)<---------ANAC46<----- >>>>>>>>>>>>>>>LFY<-----------GT1  <---------ALFIN1--------->ATERF1(1)    <---------LBD16   <-------   aacccaatggcgccttccttatcaccaatcagatcacaccacgtggcagttatcggcgccggagccgccggattagtcgcggcgcgagagcttcgtcggg  23183300                                                                                            ---------                                                                                            ---------                                                                                         <---------WRKY18(1)                                                                                        --------->WRKY45 ---HSFB2a(2)                                     --------->ARR14(2)                    ----------->HVH21 -----------HVH21                            ----------->RAV1(2)                        --------->WRKY38(1) -----MYB83                                <---------ARR14(2)              --------->ARR14(2)       - -----MYB46(1)      --------->HSFB2a(2)    --------->ARR14(2)              <---------ARR14(2)-------- -->HSFB2a(2)       <---------HSFB2a(2)   <------ZmHOX2a(1)   --------->YAB1<------ZmHOX2a(2)<------- -----P   <---------MYB46(3)              ==========================HOX2a_HOX2a         --------->WRKY12 -NtERF2 --------->ALFIN1               <---------TOE1(2)    <------ZmHOX2a(2)   ---------->DOF2    < --LBD16 <---------AtMYB61             <------NtERF2   <-----------GT1------->TEIL     --------->DOF5.7(2)   aaggtcactcggtggtcgtcttcgagagacaaaaacaagtcggaggaacctggatttacaccgatcatattgaacccgatccattaagcgttgacccgac  23183400  Previous    Next  AGI:  At1g62590.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63150.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63400.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63330.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 23180595    to: 23182913    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g62600.1    Description:  flavin-containing monooxygenase family protein / FMO family protein. similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G63370.1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62620.1); similar to FMO-like protein [Thellungiella halophila] (GB:ABJ98059.1); contains InterPro domain Flavin-containing monooxygenase FMO; (InterPro:IPR000960); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD Range:  from: 23183142    to: 23185184    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version