Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             ------>ZmHOX2a(1)                                           <---------RVE1(1)          --------->TOE1(3)                                 ----------->GT1          --------->TOE2(3)                               ---------->DOF2      --------->KAN4(2)                               <---------HSFB2a(2)                      <-----     <----------TaMYB80                               --------->HSFB2a(2)                      ------     --------->KAN4(1)           <-----------GT1  <-----------HVH21   <---------ARR11(3)<---------AHL20(2)     <---------KAN4(1)   <-----------GT1    --------->AHL20(2)        <---------GLK1(2) --------->AHL20(2) ----GLK1(2)       ----------->GT1          <---------AHL20(2)        --------->ARR11(3)<---------AHL20(1)   tgtttgaatattccttaagacaagtttaaaccattttacccttcatttaaactgttacagaaaagaaaattagattttttcattagacattttatttctg  23059900                                                                    <-----------GT1                                                                 --------->ANAC55(2)                                                          <---------AHL20(2)                       --         --------->ARR14(2)                               <---------YAB1                           <-         <---------ARR14(2)  <---------GLK1(2)           <---------AHL20(1)           --------->ARR14(2)  ----------->GT1            <---------ARR14(2)          --------->AHL20(1)           <---------ARR14(2) ----HSFB2a(2)               --------->ARR14(2)          --------->AHL20(2)  >>>>>>>>>>GATA-1 ------- --->HSFB2a(2)    --------->TOE2(3)                     --------->YAB1     <---------YAB1  <---------MYB52(1)   aaacatgtgaatatttgcattctcaatctcatattctcatatagccacaatattcgaaatataattcatgtaacaatattatcgtccaaatcccttatgg  23060000          --------->MYB46(3)            <----------ID1                                      ---------        --------->ANAC46            <------------CBF                                        ---------        --------->ANAC58           --------->ATHB51                                         <--------        --------->ANAC58           --------->ATHB12        <------------CBF     --------->TOE2(3)   --------->ZAT18                <---------YAB1      --------->LBD16       <---------AHL20(2)   <---------ZAT18             --------->AHL20(2)     <---------SPL7       <---------AHL20(1) ------------->AtSPL8          <---------AHL20(2)     <------NtERF2        --------->AHL20(1)   <---- --------------AtSPL8 --------->HSFB2a(2) ----------------->AGL1      --------->AHL20(2)   <---------CCA1(2) -->HSFB2a(2)--------->bZIP60(2)--------->YAB1       --------->RAP2.6(2)   --------->AHL20(2)   -----   aattgtacacaaaccacttcatttctcgactcatttattattgggccaagatgggccggactattgtcttaagaaaatataatctcaaaacccaaatctg  23060100                                                                                      --------->HSFC1(2)                                                                         ------------>CBF                           <---------GLK1(1)                             ------>ZmHOX2a(1)     ------ >ARR14(2)                 --------->GLK1(1)                         --------->ARR14(2)        <----- >GLK1(2)                <------ZmHOX2a(1)                           <---------ARR14(2)     <-------- -ARR14(2)            <-----------RAV1(2)              --------->At4g35610            <---------HSFC1(2) -----At4g35610       <---------LBD16                  <---------At4g35610         ---------->DOF2 ---->At4g35610     --------->TOE2(3)   ----------->GT1----------->GT1  --------->TOE2(3)<-------TEIL   ctaacatatatcgaacaaaaaacctcaggaactcttgaaaacttgttaaatgttgagagctaaaacccctaaatcctcaattcaacaaagcttcgttctt  23060200                                                                     <---------ANAC58                                                                <---------ICU4                                                                --------->YAB1                                                               <---------ATHB12                                                              ------>MYB83                                                              ------>MYB46(1)                                                             --------->WOX13(1)                                                           ----------------->AGL1                                                           ------------>CBF                                                          ------->TEIL                    <---------HSFC1(1)                  <---------SPL7                    --------->HSFC1(1)                 --------->ANAC55(2)                    <---------HSFB2a(2)                <---------ANAC55(2)               <------MYB46(1)                         <---------ANAC58        ------------>CBF                               <---------ANAC58       ------>NtERF2>>>>>>>ZML2                        --------->ANAC58       --------->LBD16                                 --------->ANAC58      --------->ANAC46                                <---------TOE2(2)     <---------LBD16--------->HSFB2a(2)               --------->SPL7 <---------ANAC58 --------------->WRI1                                 <---------TOE1(2) -----DOF2     <------MYB83---------->DOF2        <---------------AtSPL3      --------->ANAC58 -MYB52(1)    --------->MYB59         <---------ZAT6  --------------->AtSPL3  --------->ANAC58   tatattctccgccaatttggttctagaaacaaagaaattagtgttgattcgactcgtacgtaccaatcagggcctgcttcaagcccaagcttatcgatat  23060300                                              --------->At4g35610    <---------ICU4             --------->CCA1(2)             ---------->DOF2          <---------ATHB12        <--------        ---------->DOF2               ------>NtERF2               --------->WOX13(1)    --------->ATHB12  --------->ANAC58        ----------->GT1---------->DOF2       --------->ANAC58        <-------TEIL  --------->ANAC58  ---------->DOF2  --------->DEAR3(1)        --------->ANAC58    ------>ZmHOX2a(2)   ggagacggaagaaagaaatgagcaaagaaggtttaatcgcagccaaagagctcaagcgtctccaaacccaatcagtccgacttgatcgattcattggttc  23060400                                     <---------ANAC58                                     <---------ANAC58                         ------>ZmHOX2a(2)                        <------ZmHOX2a(2)                ---------->DOF2  <---------ANAC58              =================HOX2a_HOX2a              ==================HOX2a_HOX2a              ------>ZmHOX2a(1)  <---------ANAC58             --------->TOE2(3)<---------ARR14(2)       --------->TGA1a --------->ARR14(2)                                           <---------KAN4(2)       --------->O2    <---------ARR14(2)                                        ----------->GT1   <-       ====================bZIP_DOF<---------MYB52(1)                           <---------TOE2(3)  <- -MYB46(3)   --------->TOE1(3)--------->ARR14(2)                       ------>ZmHOX2a(1)          ---   tcatgtctctcgtctccttaaatccgatctcgtttccgttcttgctgaatttcagagacaaaaccaagtgttcctctgtatgaaggtataatcgttgaat  23060500                                               <---------WOX13(1)                                             --------->ATHB12                                         ----------->GT1                                        <---------TOE1(3)                                        --------->MYB59                                        <---------TOE2(3)                                   <---------ANAC46                                   <---------ANAC58                      <---------ANAC58                                   <---------ANAC58           <-------TEIL                               --------->HSFB2a(2)          <---------MYB52(1) -----MYB46(1)                 <---------HSFB2a(2)       <---------LBD16 <---------ANAC46       <---- -----MYB83                 <---------AGP1   --------->MYB52(2)----------->GT1<-----------------AGL1 ------>MYB59         <---------YAB1<----------DOF2     ------>ZmHOX2a(1)<---------ANAC58       -----   ttggttaagtttcgaactgagtttttgatagttctgggcgtttaggttaattggtctcctccggttcgtaaatttgggtgtttcgatttggaaattggtg  23060600                                                                               <-------TEIL                                                                            <------MYB46(1)                                                                            <------MYB83                                  <---------MYB52(1)                       --------->MYB59                                --------->MYB52(2)                         <---------------AtSPL8                            <------MYB83                                 --------->ARR14(1)                            <---------MYB46(3)                          --------->ARR11(1)                            <------MYB46(1)                             <---------ARR14(2)                           --------->MYB59                            ----------->ARR10                  ------>MYB46(1)<-------GAMYB                        <---------TOE2(3)             <                  ------>MYB83 <-------TEIL                           <---------YAB1                <               ----------------->AGL2                      <---------ICU4--------->CCA1(2)         --              >>>>>>>>>MYB2<---------AtMYB61              <---------YAB1--------->ARR11(3)    <------      <---------ARR14(2) <---------ANAC46      <-----------GT1  <---------TOE2(3)             ------- -----At4g35610----------------->AG    --------->YAB1   --------->YAB1<---------TOE1(3)    --------->GLK1(2) ---->At4g35610======================================================================================   ctgaaatggaaccgaaaaccaaatgtggtttggttcgttattgataatttgacatttctcatcattttggttaagatttggtacatttcggtgattctgg  23060700           <---------AHL20(2)          --------->AHL20(2)       --------->YAB1                                                              <---------ARR14(2)       <------ZmHOX2a(1)                                                     <-----------GT1      ----------->GT1                                                    ------>MYB83     <---------TOE2(3)                                                 <---------MYB59 ---------TOE1(3)                                                     --------->ANAC46 ---------TOE2(3)                                                   --------->REM1(1) -------->DOF2                                                   <---------ANAC58  --------->GLK1(2) ---------AGL15                   ------->TEIL                   <---------ANAC58  --------->ARR14(2) -------->AGL15                ------>ZmHOX2a(1)    ------>ZmHOX2a(1) --------->ANAC55(2)           < =========MADS_MADS   <-----------GT1 <---------MYB52(1)   ------>NtERF2 ------>MYB46(1)   <---------MYB59   ttaaagtaaggataaaatttgggtttaccagtcctgaaccggttttcatgcttcctcttgccgcttggcttcacctaataaaccgaatccgaaccgaatt  23060800  Previous    Next  AGI:  At1g62350.1    Description:  similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G46870.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68786.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 23060318    to: 23061600    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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