Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->At4g35610                                    <---------------AGL15                                    --------------->AGL15                                           <                                   ==================================================================                             --------->At4g35610     <---------ZAT2                           ------>ZmHOX2a(1)                             <-------GAMYB           --------->GLK1(1)                       --------                          <---------MYB52(1)         --------->ZAT2                          <-------                         <-----------HVH21           <---------At4g35610                     <-------                        <---------bZIP60(1)     --------->At4g35610                         ---------                      --------->At4g35610       <---------At4g35610                         <--------                     --------->ALFIN1    --------->At4g35610                                <--------            --------->ANAC58 <---------At4g35610--------->ZAT2                              <--------            --------->ANAC58--------->MYB52(2)  <---------ZAT2                              ---------            --------->ANAC55(1)    ----------------->AGL2                                 <---------ARR14(2)            --------->ANAC55(2)    ----------------->AGL1                                 --------->ARR14(2)            <---------ANAC55(2)    ----------------->AGL3                      <---------HSFB2a(2)  <           <-----------------------TaNAC69(2)---------->DOF2    <----------DOF2--------->HSFB2a(2) --   tagtatagctagagacgtaagaggtgctgtcagttgtgccataagcagaaagctgagctccaatgcctttggtagtagtttttggaagagaggttcctaa  22991500      --------------------->WRI1 ------MYB46(1) ========MADS_MADS ------->AGL15                                               ---------->DOF2 --------AGL15                                   --------->ANAC58 --MYB59                                         --------->ANAC58 -------->AGL3                    --------->At5g28300     --------->YAB1 ---------AGL2                --------->MYB52(1)--------->SPL7--------->DAG2                     ---- ---------AGL3                <---------ALFIN1  <---------TOE1(2)                       --------->ARR11(3) ---------AGL1               ----------->HVH21  <---------TOE2(2)                   --------->YAB1 -------->AGL1            ------>MYB46(1)   --------------->AtSPL8     <-----------------AGL1   <---- ------MYB83              ------>MYB83      <---------------AtSPL3    <-----------GT1   <---------ARR11(3) ------->MYB59         ----------->RAV1(2)  <---------------AtSPL8   --------->AHL20(2) --------->GLK1(2)   tttggtctccttggacacatcttcgacctgcctcacggtgagttaactcgtacgttataagcataaagcatttaactatattggtatcaaaatctacatt  22991600                                                                                    <---------ARR11(3)                                                                                    --------->AHL20(1)                      <---------ANAC46                      ------>ZmHOX2a(2)       --------->ARR11(3)                     ---------->ID1              --------->TOE2(2)                 --------->CCA1(1)                --------->AHL20(1)               --------->TOE1(2)                 --------->RVE1(1)                <---------AHL20(1)   <-----------GT1      --------->ARR11(3)   --------->AHL20(2)   *TSS      --------->YAB1        --------->ARR11(3)     <---------ARR11(3)----------->GT1 ----->YAB1  --------->AHL20(2)    --------->AHL20(1)  <---------WOX13(1)  --------->ALFIN1 ---TEIL   --------->AHL20(2)      <---------ARR11(3) <------------CBF     ----------->GT1      <----   catgttaattcaaaataatatttttcgtctaccaaaatatatccatataaacatgcgattgatcttgagcaagagaggtgttaaaatatcttggtatgac  22991700                                                                    <---------YAB1                                                                 <----------DOF2                                                                 =============================bZIP_DOF                                                             <---------CCA1(2)                                                            <---------ARR14(2)                                                            ------->TEIL                                                            <---------ARR11(1)                 <-----                                                            --------->ARR14(2)                 <-----                                                           <---------CCA1(2)                  -------                                                         --------->TGA1a                 --------->TOE1(3)                                                         <---------O2                    --------->TOE2(3)                                                         <---------TGA1a---------->DOF2------->TEIL                                                         --------->O2   ======================bZIP_DOF                                                         --------->ANAC55(1)        <---------TGA1a                                                         --------->ANAC55(2)        --------->ANAC58                                       <---------AHL20(2)<---------ANAC55(2)        --------->ANAC55(2)                                      <---------YAB1     --------->ANAC46           --------->ANAC46                               ----------->GT1           --------->ANAC58           <---------ANAC55(2)                           <---------TOE2(3)             ===================bZIP_DOF--------->TGA1a<-                        --------->AHL20(2)               ===================bZIP_DOF--------->ANAC58 -----YAB1       <---------TOE2(3)------->TEIL           --------->ANAC58          --------------->AtSPL3   tattagttgaaatttgactaatgaaatttaagaatgtatatttattgtaagaaatgctcacgtatctcttttgataaagaatgctcacgtaccttaataa  22991800      <---------AtLEC2     <-------TEIL   ------->MYC2   ------->MYC4                                         --------->ANAC46                       ------   <-------MYC2                                       --------->ANAC46                      ---------   ------->MYC3                                       --------->ANAC58                    <---------HSFB2a(2)   <-------MYC3                                      --------->ZAT18                <---------AHL20(2) ----AHL20(2)          ----------->TBP   ------>ZmHOX2a(2)      <---------MYB52(2)  --------->AHL20(2) ----ICU4        <---------ANAC46      --------->ARR11(3)    *TSS------->GAMYB     <---------AHL20(1) -->AHL20(2)     <---------ANAC58      <---------ARR11(3)----------->RAV1(1)       --------->AHL20(2) ------TEIL      <---------ANAC58    ----------->ARR10--------->ANAC58             <---------AHL20(2)   atacatgtgcatcgagtttgtgtgtatatatagatggctatgatctgggaagaagcacacaacacaactcaccacaaacatacaatttaattccaaaaga  22991900                 ------->TEIL                             <---------ANAC58         ---------->DOF2       <-------GAMYB --------->ATHB12               --------->ANAC58      <---------ATHB12        --------->MYB52(2)   <---------ANAC58   <---------At5g28300      <<<<<<<<<ARR2 <----------ID1    <----------DOF2   <---------ANAC46--------->ANAC46    --------->WOX13(1)  ---------->DOF2      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----->GT1    <---------YAB1  <---------MYB46(3)   <---------ANAC58<-----------HVH21 ->DOF2--------->YAB1----------->RAV1(1)    <---------YAB1<---------ANAC58  --------->ANAC58     ----   taaaaacaatcaaaagatgaatgccacaaagtttgttgtgcttctcgtgattagcgttttgtgtgccattgtcaccgcaaggcatgtcgaagaagtgtct  22992000                                                                   <---------ANAC46           --------->MYB59                                     <---------At4g35610       ------>MYB83                                            --------->At4g35610       ------>MYB46(1)   <---------HSFB2a(2)                  <-----------RAV1(1)     <---------------AGL15                                <----------DOF2     --------------->AGL15                              --------->At4g35610     <---------MYB59     --------->HSFB2a(2)            <---------At4g35610    ----------------->AGL1                              --------->ZAT2    <-----------------AGL1                         --------->At4g35610    <-----------------AGL3                         <---------GLK1(1)              <---------At4g35610    ----------------->AGL2   --------->DAG2        --------->ZAT2 <---------ZAT2  --------->At4g35610    ----------------->AGL3  ---------->DOF2        <---------ZAT2 <---------At4g35610       <--------   ----------------------->TaNAC69(2)              <---------At4g35610          <---------HSFB2a(2) ------>DOF2     <---------ALFIN1      ---------->DOF2  <---------ZAT2          --------->HSFB2a(2)   aaagagaccaaattaggcacctctcttccaaaaagtactaccaaaggcattggagctcagctttctgctgctggtattacttccagcagtagtgatgtct  22992100                                                                               --------->ANAC58                                                                               --------->bZIP60(2)                                                                               --------->ANAC58                                                 --------->ANAC58          ------>NtERF2                                     --------->ANAC58                     <---------ZAT18                                 <-----------RAV1(2)                      ----------->HVH21                                 <---------HSFB2a(2)                    --------->At4g35610        --                                 --------->HSFB2a(2)                    <---------At4g35610    ------                   --------->MYB46(3)--------->ANAC58               --------->MYB52(1)         ------     <---------At4g35610  ---------->DOF2        --------->ANAC46--------->ANAC58            <------- -ANAC46         <-----------GT1<-------TEIL     --------->ANAC58--------->ANAC58 --------->ATHB12 --   atagctctgctactggtttcaacaatcccaaaggtccagacgctaatgcatacgaaaatggctacacaagtaccagcggacaagtcattgccaagggtcg  22992200                                                                                 --------->ANAC58                                                                                ------->PIF5                                                                                <-------MYC2                                                                                ------->MYC2                                                                         <---------At4g35610                                                                         --------->At4g35610                                                                         <---------ZAT2                                                                        <-----------RAV1(1)      ----                                                                      <---------At4g35610        <---                                                                ---------->DOF2 <-------PIF5     ----                                                             --------->ANAC58   ------->MYC3     <---                                                    <---------ZAT14<---------ZAT2--------->ANAC58<--- ------->ANAC58             <---------At5g28300  --------->At4g35610  --------->At4g35610        <--- --->ANAC58         ------->PIF5              ---------->DOF2--------->ANAC58   <-------MYC3   <----- --->ANAC58         <-------PIF5       --------->ALFIN1 ----------->HVH21--------->ZAT2     <-------- ----HVH21     <---------HSFB2a(2)  --------->DAG2  --------->ZAT14<---------At4g35610      --------- ------->ANAC58--------->HSFB2a(2)---------->DOF2<---------At4g35610 <-----------RAV1(1)    ---------   caaggcaagagtttcttctgcaagtgcttctaccgctaaaggtgatgctaaagctgcagtgactcgcaaagctgctgctgcacgagcaaatggtaaggta  22992300                                                                                            <-------- ----->HSFC1(2)                                                                        ============== ------HSFC1(2)                                                                      <---------ARR11(3) ----->At4g35610                                                                     --------->ARR11(3) ------HSFB2a(1)                                                                 <---------ANAC46 ------At4g35610        ------>ZmHOX2a(1)                                    <-----------HVH21 ------ZAT2             <---------At4g35610                          <------ZmHOX2a(1) ------>ZmHOX2a(2) ---P               --------->ARR14(2)                               =========================HOX2a_HOX2a -TOE2(3)           <---------ARR14(2)                      ----------->GT1 <---------ANAC58<-------- >MYB59      --------->ALFIN1             ---------->DOF2---------->DOF2    <---------ANAC58--------- >DAG2       ----------->HVH21   >>>>>>>>>TBF1 ---------->DOF2   ---------->DOF2 <---------At4g35610   gcttcggcatcaagggtgaagggttcctctgagaagaagaagggcaaaggaaagaagggcaaaggaaaaaaggattgagcgtgaggtgatctcatattct  22992400  Previous    Next  AGI:  At1g62214.1    Description:  unknown pseudogene Range:  from: 22991148    to: 22991603    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g62220.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G62060.1) Range:  from: 22991861    to: 22992509    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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