Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <---------MYB52(1)                   <-----------------AGL1                  --------->ARR14(2)               <---------ANAC58               <---------ANAC58               <---------ANAC55(2)                           --------->ANAC58               --------->ANAC55(2)                           --------->ANAC46           >>>>>>>>>>WRKY26              <-----------------------TaNAC69(2)  --------->ANAC55(2)                   <-----------GT1            --------->ARR14(2)                <---------ANAC58            <---------ARR11(3)        < ---------TOE2(3) <---------ARR14(2)          <---------ANAC58 ----------->RAV1(2)      >>>>>>>>>>WRKY38 ---------TOE1(3)<---------CCA1(2)   ----------------------->TaNAC69(2)   --------->ARR11(3)     <--- -------->MYB59<---------ANAC46   <---------ARR11(3)         --------->ANAC58           >>>>>>>>>>WRKY43 -->HVH21   <---------ARR14(2)    --------->ARR11(3)  <----------DOF2    <---------CCA1(2)      <----   tttaggttatagcagtttcgtatcccgtttggaaagtatcttagagttgcatacgtctttaatacgcctggctctaaatctttctgaatttgaccaattt  22958400                                                                                           <---------ZAT2                                                                                   <---------ALFIN1                                                                            <---------GLK1(1)                               ----------->GT1                              --------->GLK1(1)                       <---------At4g35610                                 <---------ARR14(2)                   <-----------HVH21               <---------ETT(2)        --------->ARR14(2)--------    --------->ANAC46 <-----------RAV1(2)   <---------ARR14(2)           <---------ANAC46   <---------At4g35610 ---------ALFIN1   <-----------TGA1        --------->ARR14(2)          <---------LBD16     --------->ZAT2 --------GT1      <---------ANAC58         <-----------ARR10     <-------TEIL   --------->ZAT18 -------GT1       <---------ANAC58        <---------CCA1(2) <------ZmHOX2a(1)   <---------ZAT18   tcccaccctcaacaaatttagcgtcagacgagtatgttaatcccaaatctccatcgacataaggaggctcattagcggatagcccacaatccaagctgat  22958500                                                  --------->CCA1(2)                                               ----------->GT1                                             ---------->DOF2                                       ------>ZmHOX2a(1)                                       ------                                     ------>ZmHOX2a(2)                                         ------   ------>ZmHOX2a(1)               --------->ARR11(3)                     ----------->GT1  --------->ARR14(2)   --------->LBD16   <---------ARR11(3)<---------YAB1                  --------->GLK1(2)   <---------ARR14(2) --->GT1             --------->ARR11(3)--------->LBD16            ---------->DOF2<-----------GT1   aaatcctggtaatagaaaaacaagatttcatgatgttgatcctgataaaaagataaacaaaaccaatgtaaagaatttgtaaattaccttctggttcctg  22958600                                                                               --------->LBD16                                                                              <---------LBD16                                                                              --------->LBD16                                    ----------->GT1<---------TOE2(3)         --------->HSFB2a(2)                                    <---------ANAC58                         <---------LBD16  <---------ARR14(2)                <---------ANAC46     --------->YAB1      <---------HSFB2a(2)-----  --------->ICU4               --------->ANAC58   <---------DOF5.7(2)    <---------ANAC58    --------  --------->ARR14(2)           --------->ANAC46  --------->WRKY12------>ZmHOX2a(1) --------->GLK1(1) --->LBD16----------->GT1      --------->ANAC58  ----------->HVH21       <---------ANAC58  ---------- >ZmHOX2a(1)        <---------ANAC46<---------ANAC58    <-------TEIL <---------MYB52(1)<-----------GT1   agcaaatatgagttgtataatggcgaaaaccacaagcagcgtgaataagagttgacgattcatcatcctctgtttgcttccagggaaattcaccaaaggt  22958700                      <---------GLK1(1)                  --------->ANAC58                  --------->ANAC58           <---------ATHB12                                                        *TSS         ------>MYB46(1)                   ----------->GT1                         --------->YAB1         ------>MYB83 --------->GLK1(1)   <---------TOE2(3)                       <---------YAB1       <---------------AGL15     --------->LBD16                               <---------YAB1      ----------------->AGL1    <---------HSFB2a(2)                          --------->YAB1 --------------->AtSPL3         <---------HSFC1(1)                         --------->ANAC58         - <---------------AtSPL8         --------->HSFC1(1)                         --------->ANAC58       --- ---->ALFIN1      --------->ANAC46        <---------TOE1(3)         --------->ANAC58           <----- ->DAG2--------------->AGL15    --------->HSFB2a(2)                 --------->ANAC58           ------ >DOF2----------------->AG     <---------LBD16                      --------->ANAC46<---------AHL20(2)   gttgaagtaccaaatgatgcaaggaactcttcttctggaaaatgaaggtaacttataaattcttcaggcccagccacaagcattataaaaattcgaataa  22958800              <---------AHL20(2)                                                                  ---             <---------AHL20(1)                                                         <---------REM1(1)             --------->AHL20(2)                                                         <---------YAB1             <---------ARR11(3)                                              <---------WRKY45     <--             --------->AHL20(1)                                              <---------WRKY12    ----        --------->AHL20(2)   ---------->DOF2                                 <---------WRKY38(1) <---        <---------AHL20(2)----------->GT1                          ----------------->AGL1   --------- -------->MYB46(3) <-----------HVH21                           <---------ANAC58      <---------YAB1 ------>YAB1 <---------AHL20(2)                                <---------ANAC58      --------->ICU4 ----ICU4    --------->ARR11(3)                               --------->ZAT2<<<<<<<<<WRKY6  --------- --->YAB1   --------->AHL20(2)                     --------->YAB1------>NtERF2<---------DOF5.7(2)<---   taacaaacaaataaatatatttgtcaagtagtaaagaacatagaacatttcagtcataacaacatgctggccttaatagtcaacgtgatgatgaaggcaa  22958900                                                                  <---------------AGL15                                                                  --------------->AGL15    <-------TEIL                                                 <-----------------AGL3  --------->ARR14(2)                                          <---------ZAT14  <---------ARR14(2)                            <---------At5g28300 <---------YAB1 ---->MYC3                                     <-----------GT1--------->ZAT14 -----MYC3                                 --------->AHL20(2) --------->ZAT18 ----->O2         ---------->DOF2          <---------AHL20(2) <---------ZAT18 ------O2   <---------ZAT18            <---------AHL20(2)    --------->DEAR3(1) >ANAC58    --------->ZAT14           <---------AHL20(1)   <---------At5g28300 >ANAC58    <---------ZAT14           <---------ARR11(3)  <-----------GT1 ------ANAC46 ----------->RAV1(1)     --------->AHL20(1)<-----------HVH21                          <-   cgtggatacatcactgcaccaaaagcacatatagtgtctatatatttatttactgttttgtcaccgcactatttttggtgattttgttagaaattttggt  22959000                                                                       --------->ZAT18                                                                       <---------ZAT18                                                                      --------->ALFIN1                                                                   <------ZmHOX2a(1)                                                                  <------MYB46(1)         <---------ATERF1(1)                                             ---------->DOF2      <------MYB83 --------------->AGL15                                       --------->ZAT2           <--------P     ------>ZmHOX2a(1) ---------DOF2    ----------->GT1      <---------ZAT2        <---------TOE2(3) <---------------AGL15   tctttagcaaataagtcaaatggtgcaaataagaaaactccagcttgtaaagaagacaatttcaaggtaggagtgggcttcctcttactgggagactcca  22959100                                                  --------->AHL20(2)                                            --------->YAB1                                          --------->AtLEC2                                      ------>ZmHOX2a(2)                                     <------ZmHOX2a(2)                                    --------->ARR11(3)   <---------ATHB12                                    <---------ARR11(3) --------->WOX13(1)          --------->HSFB2a(1)      --------->GLK1(1) <---------YAB1  <---------ANAC58                 <---------GLK1(1)<-----------GT1<---------At4g35610  <---------ANAC58            <---------ZAT14     <---------AHL20(2)         <---------MYB46(3)   tgaggcttcccaacgttctccatcggatagagaacagagatctcatgcataatttatcaatctttgttctgctatccgatggatgaagaaggcacagttg  22959200                                                 <---------DOF5.7(2)                                               --------->DOF5.7(2)                                               <---------MYB52(1)                  ---------->DOF2         <-----------GT1               --------->YAB1     <-------TEIL<-------GAMYB            --------->YAB1       --------->CCA1(2)       ----------->GT1         ------>MYB83        --------->ZAT6          <---------ARR14(2)      --------->LBD16          ------>MYB46(1)       <---------ATHB12         --------->ARR14(2)      ------>ZmHOX2a(1)--------->YAB1       -------   ataaggcccatcactaataataaagcatgtttcagatacaaaattttccgttaacttcctggtaaaatgcaggtttcatgacctacaatagacaaaacca  22959300  Previous    Next  AGI:  At1g62090.1    Description:  pseudogene, protein kinase family, similar to light repressible receptor protein kinase (LRRPK) (Arabidopsis thaliana) GI:1321686; contains Pfam profiles PF02536: mTERF, PF00069: Protein kinase domain, PF00560: Leucine Rich Repeat; blastp match of 38% identity and 1.7e-162 P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf senescence-associated receptor-like protein kinase {Phaseolus vulgaris} Range:  from: 22954346    to: 22958783    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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