Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                         <----------DOF2                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <---------ZAT18                                 --------->ZAT18                                 <---------ZAT14                           <---------ANAC58                                 --------->ZAT14                    --------------->AGL15                               --------->ZAT14                     <-----------------AGL1                             --------------->AtSPL8          <----------DOF2                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------DAG2 <---------ANAC58                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <-----------GT1   <---------ANAC46<---------         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <----------DOF2 <-----------GT1        xxxxxxxxxxxx        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->AHL20(1)        --------->MYB52(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <-----------GT1 <---------AHL20(2)      <---------MYB52(2) xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->DOF2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------>GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------AHL20(1) ---ANAC46  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------AHL20(2)   gtaaaagaactaacaaaatagtcatggtttcagagtacactctctttcttcactttcaattacctttttacccattttcgtattttatatatattacatg  22891700                                                                                         --------->MYB46(3)                                                                                        ------>MYB46(1)                                                                                        <xxxxxxxxxxxx                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                    <---------ARR11(3)  <xxxxxxxxxxxx                                                                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                 --------->AtMYB61     --------->MYB52(1)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                 <---------ALFIN1     --------->AtMYB61                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                              --------->AtMYB61       ------->GAMYB                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                             <---------MYB55(2)      <---------MYB55(2)                                                             --------->MYB46(3)      <xxxxxxxxxxxxxxx                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                           xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxx                                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                          --------->MYB46(3)       <xxxxxxxxxxxxxxxxx                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     x                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xx                                                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)     <---                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxx                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    xxxx                                                        --------->AtMYB61         <xxxxxxxxxxxxxxxxxx                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<------ZmHOX2a(2)                                                        <---------ALFIN1        <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)---------                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<--------                                                     <---------ALFIN1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                     --------->DEAR3(1)         --------->YAB1   <xxx                                                     --------->AtMYB61       --------->AtMYB61   <xxx                                                    --------->MYB46(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           --------->YAB1                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)------>MYB83<         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<---------ALFIN1         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->ANAC46 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------ARR11(3)            <----------DOF2----------->RAV1(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)--------->MYB46(3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <-----------GT1------->GAMYB --------->MYB46(3)------>ZmHOX2a(2) --GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<----------DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxx xxxxxxxxxx>smallRNA(le3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ctatttttcaaaatcatataaaacacttagaattatctcatctttcttttttccaccaccacaaccaccacatcttccaccatcacaaccacccgatctc  22891800                     --------->MYB52(1)                    xxxxxxxxxxxxxxxxx>smallRNA(si3)                 ------>NtERF2                xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              <---------At4g35610              --------->At4g35610              <xxxxxxxxxxxxxxxxsmallRNA(i)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxsmallRNA(si3)     <---------AHL20(2) xxxxxxxxxxxsmallRNA(se3)     --------->AHL20(2) xxxxxxxxsmallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxsmallRNA(le3)--------->TOE2(3) xxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    --------->AHL20(2) xxxxxxxxxxxxxxx>smallRNA(i)<-----------TBP  --------->At4g35610             <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <------ZmHOX2a(2)             ---------->ID1 -------DOF2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  <---------ARR14(2) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->ARR11(3)        --------->ARR14(2) xxxxxxxxxxxx>smallRNA(i)<---------MYB52(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------ARR11(3)               < ->GLK1(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 ----------->ARR10                  < >ARR14(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                <---------At4g35610                  x -ARR14(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      ------------>CBFxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------ARR11(3)  <---------HSFB2a(2)                    - xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------YAB1  <----------DOF2 --------->ARR11(3)            <--- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---------WOX13(1)     --------->HSFB2a(2)<---------AHL20(2)  < xxxxxxxxxxxxxxxxxx>smallRNA(le3)<------------CBF  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------YAB1   tttttcgataaatctaggctgccaaacgttatttatattgatagatcatctctctttcaatttgcagaagatttgtcatttttttattcgattttgattc  22891900       <---------HSFB2a(1)       xxxxxxxxxxxxxxxx>smallRNA(i)       --------->HSFB2a(1)       <---------HSFC1(2)     <---------GLK1(2) ---------ANAC46                <---------AHL20(2) ---------ANAC58   <---------YAB1                                                                   - xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <---------AHL20(2)                            -------- -------------------->WRI1     <---------AHL20(2)                       <-----------GT1      <------- -------DOF2--------->LBD16    --------->AHL20(2)                <---------AtLEC2     <-----------GT1 ---------ANAC58<---------MYB52(1)<------------CBF         --------->ATHB12      <---------YAB1  ----   tttcttggaatctccgtcgttatgtttttttttttaaattgtatgttatttttttttagggtgatttgcataaataaccatttttgataaactatttaaa  22892000                                                                                               ------                                                                                            ---------                                                                                           ------>ZmHOX2a(2)                                                                                         <---------ARR11(3)                                                                                     <---------ANAC46                                                                                     <---------ANAC58                                                                                     <---------ANAC55(2)                                                                                     <---------bZIP60(1)                                                        ----------->GT1              --------->TGA1a                                                        --------->ANAC58             --------->ANAC55(2)                                 --------->ZAT6         --------->ANAC58             --------->bZIP60(1)                          --------->AHL20(2)            <---------ANAC55(2)          <---------TGA1a                        <---------ANAC55(2)             --------->ANAC55(2)          <---------ANAC58                        ----------->GT1          ---------->DOF2                     --------->O2 --------->DOF2       --------->AHL20(2)    <---------ANAC46          --------->ICU4 ================ ->AHL20(2)       <---------AHL20(2)        ----------->GT1      ------>ZmHOX2a(1)   <---------O2 --AHL20(2)      --------->AHL20(2)        <------ZmHOX2a(1)     =================================HOX2a_HOX2a ----->AHL20(2)>>>>>>>>>GATA-1 <-----------GT1   ==============================================bZIP_DOF   aatatagcaccttcatagataaaattaagtaaataacactaccgaggagtgaaaagtcaagtaactcctgtaatgaagaagagagggacgtgatctatca  22892100                                                                      <---------bZIP60(2)       <----                                                              <---------MYB46(3)       <---------bZIP60(2)                                                             <---------AtMYB61 <---------MYB46(3) <--                                                             <---------ZAT6   <---------ZAT6   ------                                                     <---------bZIP60(2)      --------->ALFIN1 <-----                                                     <---------O2     <---------ANAC58 <---------ANAC58                                                     <---------ANAC58 <---------ANAC46 <---------O2                      ---------->DOF2                <---------ANAC58 <---------O2     <---------ANAC46               --------->ANAC55(1)                   <---------ANAC46 <---------ANAC58 <---------ANAC58               <---------ANAC55(2)                  <------NtERF2<---------MYB46(3)   <------NtERF2<-               --------->ANAC46                   <---------ANAC46   <------NtERF2<---------MYB46(3)       <---------MYB52(1)                       <---------MYB46(3) <---------ANAC46 <---------ANAC46- --->ZAT6      --------->ANAC58                --------->ALFIN1 <---------AtMYB61<---------AtMYB61--- >WOX13(1)     --------->ANAC58                <---------AtMYB61--------->ALFIN1 --------->ALFIN1 <-- ================================bZIP_DOF   --------->ALFIN1 --------->ALFIN1 <---------AtMYB61<-----   ctcgtttcggtttggacacgcatgaaaagagagaagcatgggcaatgtggtggtgtcgtggtagtggtggtgtcgtggtagtggtggtgtcgtggtagtg  22892200                                                                                                    <                                                                                                    -                                                                                               <-----                                                                                             <-------                                                                                             --------                                                                                            <------NtERF2                                                                                            <-------GAMYB                                                                                            ---------                                                                                           <---------DEAR4(2)                                                                                           <---------DEAR3(2)                                                                                           <---------MYB46(3)                                                                                           <---------ATERF1(1)                                                                                          <---------DEAR3(1)                                                                                          <---------ANAC46                                                      --------->ALFIN1                    <---------DREB2C(2)        --------->YAB1                                <---------AtMYB61                   <---------AtMYB61       <---------YAB1                               <---------MYB46(3)      --------->MYB52(1)------>NtERF2     <---------At4g35610                           <---------AtMYB61    <---------YAB1    --------->ALFIN1   <------NtERF2                           <---------ANAC58         <------NtERF2        <---------ABI4(1)  ------>NtERF2                            <---------ANAC46       <---------PCF2        <---------RAP2.3(1) <---------PCF2                            <---------O2         <---------MYB46(3)     <---------DEAR3(1) -----MYB46(3)                             <---------ANAC58    <---------AtMYB61      <---------At4g35610 -------DEAR3(1)        --------->At4g35610<---------bZIP60(2) --------->ALFIN1------->GAMYB<-------- --->ALFIN1            ------->GAMYB      <------NtERF2<---------MYB46(3)--------->YAB1<---------RAP2.3(2) ----AtMYB61--------->RAP2.6(3)   <---------AtMYB61<---------ZAT6--------->ATERF1(1)  --------->At4g35610 --------MYB46(3)   ----------->RAV1(1) <---------ANAC46       <---------DEAR3(1)    ------->GAMYB -- -------->ATERF1(1)--------->MYB46(3) <---------MYB46(3)    <---------AtMYB61--------->RAP2.6(3)<---- ------>ALFIN1------->GAMYB    --------->ICU4      --------->ALFIN1------>NtERF2    --------->MYB46(3) -------AtMYB61  ----------->RAV1(1) <---------AtMYB61<---------ANAC46<---------At4g35610<------NtERF2 ----ZAT6  --------->MYB52(1)  <---------ZAT6     xxxxxxxxxxxxxxxxx>smallRNA(fl3) ----------->RAV1(1)   gtggtgccgatgataacggcaacaacagcggtagtgatggtggtgtcgtggtagtggtggtgatggtggtgccgatgataacggcaacagcggcggtggc  22892300                                                                                              -------                                                                                              <------NtERF2                                                                                              -------                                                                                             <-------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                            <--------                       <---------YAB1                                                       ---------                    <---------ARR14(2)                                                      <--------                    --------->ARR14(2)                                                      <--------                    <---------MYB52(1)                                                     --------->RAP2.6(3)                   <-------GAMYB                                                           <------NtERF2                  <---------MYB46(3)                                                      <---------ERF1                  <---------DEAR3(2)                                                      <---------ATERF1(1)                 <---------ANAC46                                                        <---------DEAR3(1)   --------->YAB1<---------DEAR3(1)              <------NtERF2                   --------->MYB52(2)  <---------YAB1<------NtERF2                  --------->ALFIN1                <---------MYB52(1) ---------ICU4 <---------RAP2.3(1)             <---------DEAR3(1)             --------->TOE2(3) -------->YAB1 ------------>AtMYB77            <---------ANAC46              <---------ANAC58<------- -NtERF2--------->MYB46(3) <---------MYB46(3)<---------MYB46(3)              <---------ANAC46------>NtERF2 --DEAR3(1)   <---------DEAR3(1)            <---------AtMYB61                <---------ANAC58<------- ->ALFIN1     <---------RAP2.3(2)      ----------->RAV1(1)                   <---------ZAT6--------->ATERF1(1) >ATERF1(1)  --------->At4g35610      --------->MYB46(3)          --------->ANAC46     <---------MYB46(3) -ABI4(1)----------->RAV1(1)    <---------bZIP60(1)               --------->ANAC58    <---------AtMYB61 ------->ICU4<---------At4g35610--------->bZIP60(1)  <---------AtMYB61--------->At4g35610--------->ALFIN1 -----ANAC46------->GAMYB  ----------->GT1  --------->ALFIN1      --------->ANAC58 <---------ZAT6   gattatgacaacaacagcggcggttacgatggtgacatcaacaacagtggtggcgatggtgatggctcaagcagcggtagcgttagtgatggtggcggct  22892400  --------->TOE2(3) -->At4g35610 -->ATERF1(1) --ATERF1(1) -DEAR3(1) -ANAC58               <--------ATHB1                                                         ------>ZmHOX2a(2) -ANAC46               --------->ATHB12                                                     <-------- -RAP2.3(3)           --------->ICU4                                            <---------AHL20(2) -RAP2.3(2)           <---------ATHB12                                         --------->AHL20(2) >ATERF1(2)       <---------YAB1                                               <---------AHL20(1) -RAP2.6(2)      --------->TOE2(3)                              --------->WOX13(1)          <-------- -ANAC58        <---------ICU4                     --------->AHL20(2)    --------->TOE2(3)  --------- --ERF1         --------->YAB1                     <---------AHL20(2) <---------GLK1(2)     ------->TEIL --RAP2.3(1) --------->REM1(1)             <---------YAB1     <---------YAB1   <---------AHL20(2)   -   tcagccttatatgcttcatcatcaatgatttagatgttttgaattcttattttttaatttttgtatcattcaaattcttaatttttttctcatggatcta  22892500                      <---------ZAT14                     <----------DOF2                     --------->TOE2(3)                                       ----------->GT1                     <---------------AGL15                                   <---------MYB46(3)                     --------------->AGL15                                  <---------ANAC46       <---------ARR11(3)                                                   --------->ALFIN1       --------->ARR11(3)                                                   <---------AtMYB61       --------->GLK1(2)                                                  <---------MYB46(3)       --------->ARR14(3)              --------->ARR11(3)      --------->ARR11(3)       <---------ARR14(3)              <---------ARR11(3)    --------->ARR14(2) -ARR11(3)        <---------AHL20(2)   <---------GLK1(2)     <---------ARR14(2) -AGP1 --------->ARR14(2)      --------->DAG2           ------>NtERF2    <---------AtMYB61<---------ANAC46 >ARR11(3)        <-----------GT1    ----------->ARR10  --------->LBD16  <-----------RAV1(1)    ----- ------>TEIL   <---------ICU4 ---------->DOF2         <---------LBD16  --------->MYB52(2) --------->At4g35610   tgaatccaaaatcttcatatttactttagtgggaaagtgaagatttttggacatactccggcaaatatgttgttagtggtggtgaaactatgaggtgaat  22892600  Previous    Next  AGI:  At1g61920.1    Description:  unknown protein Range:  from: 22892122    to: 22892433    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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