Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  =====================                                                                                ------>ZmHOX2a(2)                                                                               <------ZmHOX2a(2)                                                                               ======================                                                                               --------->CCA1(2)                                                                <---------HSFB2a(1)                                                          --------->At4g35610 --------->ARR14(2)                                                         ----------->RAV1(1)  <---------AGP1                                                       --------->At4g35610    <---------ARR14(2)                                                       <---------At4g35610    --------->AGP1       ---------->DOF2       <---------ANAC58     <---------ANAC58            --------->ARR11(3) --->ANAC58                  <---------ANAC58     <---------ANAC58            <---------ARR11(3) --->ANAC46          --------->YAB1               <---------ANAC46           <---------GLK1(1)    --- ----ANAC55(2)     --------->ANAC58              <-----------------------TaNAC69(2)               <-- --->ANAC58        --------->ANAC58       <<<<<<<<<<<<<<<<<LFY  --------->HSFB2a(1)               ---   aaaaactcttaaagagtgatcaagcatattagcttgagcatacaaaacaatggcgtgagcagcaaaacgttccgatttgagatctggtctgttttcgatg  22869900                                                               <------NtERF2                                                             <---------DEAR3(1)                                                             <---------ANAC46                                                            <---------LBD16                                                            <------NtERF2                                                            --------->At4g35610                                                            --------->ATERF1(1)                                                            <---------ABI4(1)                                                            <---------At4g35610                                                           ------>NtERF2                                                           <---------DEAR4(2)                                                           <---------RRTF1(1)                                                           <---------ATERF1(1)                                                           <---------RAP2.6(1)                                                           <---------ERF1                                                           <---------ORA47(2)                                                           <---------RAP2.3(1)                                                          <---------DREB2C(2)                                                          <---------RRTF1(2)                                                          <---------RAP2.3(3)                                                          <---------DEAR3(1)                                                          <---------RAP2.3(2)                                                          <---------RRTF1(3)                                                         --------->ATERF1(1)                                                         <------NtERF2                                                         <---------ABI4(1)                       --------->LBD16                  ------>NtERF2                     <---------At4g35610                <---------ATERF1(1)             <-------TEIL                               <---------RRTF1(1)            --------->GLK1(2)                           <---------DEAR4(2)            --------->ARR14(1)                          <---------RAP2.3(1)            --------->CCA1(2)                           <---------ERF1           --------->ARR11(1)                          <---------RAP2.3(3)           <---------ARR14(2)                          <---------RAP2.3(2)           --------->ARR14(2)                       --------->ETT(2)          <---------HSFB2a(1)                      <---------HSFB2a(2)         ----------->ARR10                         --------->HSFB2a(2)        <------ZmHOX2a(1)                       --------->GLK1(2)                        --------->GLK1(2)     --------->HSFB2a(2)                       <---------GLK1(2)     <---------------------WRI1     <---------HSFB2a(2)                       --------->ARR14(2)  --------->DAG2        <---------ARR14(2)  <-----------HVH21  --------->At4g35610       <---------ARR14(2) ---------->DOF2       --------->WOX13(1) ==============HOX2a_HOX2a                   ----------->ARR10--------->LBD16         <------NtERF2 ==============HOX2a_HOX2a                <------NtERF2<---------DEAR3(1)            --------->LBD16 ---->TEIL<---------GLK1(1)             <---------DEAR3(1)--------->DEAR3(1)        <---------RAP2.6(2) -------ARR14(2)     <---------LBD16   <---------HSFB2a(2)<---------RAP2.6(2)       --------->ANAC46 ------>ARR14(2)  ---------->DOF2      --------->HSFB2a(2)<---------ATERF1(2)      <---------LBD16   aatccgtcgaggagattcgatacagcggagaaatgtttcttctcggcgagattctcgacggcggcggagaaagcgattcgatctatgcggcaatctggag  22870000                                        <----------DOF2                                       ------>ZmHOX2a(2)                                     <---------ARR14(2)                                     <---------ARR11(3)                                 ------>ZmHOX2a(2)                                <------ZmHOX2a(2)                               --------->ARR14(2)                          --------->ARR14(2)                          --------->ARR11(1)                      --------->HSFB2a(2)       <---------ARR14(2)                  --------->GLK1(1)  --------->ARR11(3)                 --------->ARR14(2)  --------->ARR14(2)                 <---------ARR14(2) <---------CCA1(2)           --------->ANAC58    --------->ARR11(3)           --------->ANAC46    <---------ARR14(2)                                 <----------DOF2           --------->ANAC58--------->CCA1(2)    --------->ARR14(2)         <---------DAG2         <---------ALFIN1 <---------ARR14(2)<---------HSFB2a(2)            <----------DOF2         <---------AtLEC2===============HOX2a_HOX2a                       <---------ANAC58        <---------ZAT14  <------ZmHOX2a(1)  --------->HSFB2a(2)           <---------ANAC58     <---------At4g35610 =====================HOX2a_HOX2a             <----------DOF2 <---------ANAC46     --------->At4g35610 ==============HOX2a_HOX2a               --------->At4g35610  <---------ANAC58     --------->ZAT2   <---------HSFB2a(2)   <---------LBD16      <---------At4g35610  <---------ANAC58    --------->GLK1(2)<---------ANAC46<---------AGP1              <---------ZAT2<-----------GT1  <----   taagagaagctgcacggcagatttcgaggatacgatctggatctttctcggatttgagaagagagagagctgctttgcttttttctttgcttgtgagagg  22870100                                                                      <---------ANAC46                                                                      <---------ANAC55(2)                                                                      --------->ANAC58                                                                      --------->ANAC58                                                           <---------ANAC58                                               --------->GLK1(1)    --------->MYB52(1)                                               <---------GLK1(1)   ----------->HVH21                                              <---------ARR14(2)   --------->ALFIN1                                  <------ZmHOX2a(1)        <---------ANAC46                   <------                     <---------MYB46(3)       --------->ARR14(2)   ----------->TGA1           <------      --------->ARR14(2)          ================HOX2a_HOX2a    <---------At4g35610          -------      <---------ARR14(2)<---------REM1(1)  ------>ZmHOX2a(2)     --------->At4g35610      ------->TEIL      ------->TEIL<------ZmHOX2a(1)     --------->ATHB12   <---------ANAC58     --------->ARR11(3)<-- --ZmHOX2a(1)     ================================HOX2a_HOX2a   <---------TOE2(3)        --------->MYB52(1)   agtttttgaatctggtgagaggattgttgaagccgaggagagtgatcggatttgtggtgatgcgttgaggtgacggaagagagatgttgatgaacggatt  22870200         >>>>>>>>>>>>>>>>>LFY        --------->ANAC58        --------->ANAC46        --------->ANAC58      --------->MYB52(1)                                                                        <---- ---ARR14(2)                                                                               <---------MYB46(3) ---GLK1(2)                                                   >>>>>>>>>TBF1              <----------- -->ARR14(2)                                      ----------->GT1               *TSS  <---------TOE2(3) -------HSFB2a(2)                           --------->At4g35610              ----------->GT1    <----   cgagagagtaacgccattgttgttttcttagggttttagatgaagaagatgactgtgaaatgaagaagaagacggagactggagaattagggattgttag  22870300                                                                                                    <                                                                                                    -                                                                                                   --                                                                                                   --                                                                                                   <-                       <---------ICU4                                                             ---                       --------->YAB1                                                             <--                      <---------ATHB12                                <---------At4g35610         ---                      <---------YAB1                                  --------->At4g35610         ---                <-----------ARR10                                <-------GAMYB                   <---          ----------->GT1        --------->ATHB12               <---------DEAR3(2)        --------->DAG2          <---------ANAC46      ----------->HVH21               <---------MYB46(3)       ============        <---------ANAC46       <---------MYB52(1)      ------------>CBF                  ---------->DOF2 -----TOE1(3)   --------->ARR11(3)            ---------->DOF2  <---------DEAR3(1)    --------->AHL20(2) -CBF<-----------RAV1(1)     <---------MYB46(3)       <<<<<<<<<<<<<<<<<LFY    ----------->GT1   ----- -----TOE2(3)   <---------ARR11(3)         <---------AHL20(2)------------>AtMYB77    <---------AHL20(2)   ggtttttgtgttgtgtaaaatctaatcatagccgttgatgggtattttaaaagtcttcacaatggacggttgagatgaaaacgaaaattaaaaaagttga  22870400                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                              <---------HSFC1(2)                                              <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                              --------->HSFC1(2)                                              --------->HSFB2a(1)                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             <xxxxxxxxxxxxxxxxsmallRNA(le3)                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                          <xxxxxxxxxxxxxxxxsmallRNA(s)                                          <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                         <xxxxxxxxxxxxxxxxsmallRNA(se3)                                         --------->ANAC58                                         <xxxxxxxxxxxxxxxxsmallRNA(si3)                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                         --------->ANAC55(1)                                     ----                                         --------->ANAC46                                   <--------                                         --------->ANAC55(2)                               ----------                                         --------->ANAC58                                  --------->LBD16                                   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                 <---------LBD16                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  ------>ZmHOX2a(2)                              <xxxxxxxxxxxxxxxxxsmallRNA(si3)                           <------ZmHOX2a(2)                              <xxxxxxxxxxxxxxxxsmallRNA(s)                             --------->ARR14(2)                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <---------LBD16                            <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxsmallRNA(i)                            <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <xxxxxxxxxxxxxxxxsmallRNA(s)                            <---------TGA1a<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)------>NtERF2 *TSS                            --------->O2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxsmallRNA(se3)            <---------HSFB2a(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <xxxxxxxxxxxxxxxxxsmallRNA(fl3)            <---------LBD16 <---------O2<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  ------>NtERF2 <---           <---------LBD16  --------->TGA1a<xxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->GLK1(1)     <xxxxxxxxxxxxxxxxsmallRNA(s)                     <xxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------ARR14(2)    <xxxxxxxxxxxxxxxxsmallRNA(s)                     <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->ARR14(2)   ----------->HVH21<xxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->LBD16        --------->ANAC46<---------ANAC55(2)  <-----------RAV1(2) <---------ALFIN1 ---------LBD16         <xxxxxxxxxxxxxxxxsmallRNA(s)        <-----------HVH21<xxxxxxxxxxxxxxxxxsmallRNA(si3) ----->ZmHOX2a(2)       <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------->CCA1(2)        <xxxxxxxxxxxxxxxsmallRNA(si3)  ------>ZmHOX2a(2) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------->ARR14(1)       <xxxxxxxxxxxxxxxsmallRNA(le3)<---------ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -----ZmHOX2a(2)        <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>ARR11(3)       <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(s)--------->ANAC46 ----- -------ARR14(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) >>>>>>> ------>AGP1--------->HSFB2a(2)  <xxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->ANAC58--------->ANAC46 ------>ARR14(2)      ------->TEIL<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---------YAB1<---------ARR14(2) ------GLK1(1)       <-----------GT1 <xxxxxxxxxxxxxxxxsmallRNA(le3) --------->ANAC46--------->ANAC58 =====================================bZIP_DOF<---------HSFB2a(1)   --------->ANAC58--------->ANAC58 ------>ARR10--------->LBD16<---------ANAC46<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->DEAR3(1)   gatccggatttgttcggggaattgaacccgacgtgaatcgaacacgcaaccttctgatctggagtcagacgcgctaccattgcgccacggatccggtaat  22870500                                                                     <---------At4g35610                                                                     --------->At4g35610                                                              <---------ANAC46                                                             <---------LBD16                              ----------->GT1             --------->At4g35610                           <---------At4g35610            <---------At4g35610                     <------------CBF                     <---------ZAT2 ----->AHL20(2)    --------->ARR11(3)                    <---------MYB46(3)  <---------ARR14(2) -MYB52(1)         --------->AHL20(1)          <---------ANAC46 <-------GAMYB--------->ARR14(2)    <- ->GT1             <---------AHL20(1)       <-----------RAV1(1)<---------MYB46(3)     --------->ICU4 ------AHL20(2)   ----------->TBP  <------------CBF     <--------P  <---------TOE2(3) <---------YAB1 ---->ICU4        <---------AHL20(2) ----------->GT1  --------->ATHB12 ----------->HVH21    --------- >>GT-2         <-----------TBP  --------->AHL20(2)   <---------MYB46(3)     --------->GLK1(2)   <---   taatagtctctctaacttatatatattgcagaagataaattgtattatggtgcgaatggttgctgcggttgaggtgacaaatctggtgatgaataagtca  22870600       --------->ANAC58       --------->ANAC58       --------->ANAC46                         ------>ZmHOX2a(2)                                 <--    --------->ARR14(2)              --------->AHL20(2)                                          <---- --------->ANAC58                   <---------AHL20(2)                                     <------MYB83 --------->ANAC58                 --------->TOE2(3)        <---------WRKY12          --------->YAB1 --------->ANAC46                 <----------DOF2       ------->GAMYB        --------->ZAT18  <------ --------ALFIN1             <-----------GT1   <---------ARR11(3)             <----------ID1<---------MYB46(3) >ANAC46                <---------DAG2     --------->HSFB2a(2)            --------->DAG2 <---------WOX13(1) ------ALFIN1           <----------DOF2    <---------HSFB2a(2)           --------->MYB52(1)<------MYB46(1)   cacacgcatacgcttcccataaactacttttttctactttaatttctcgatcttacaacggtccaaggctagaaataaggggactaatcagattggttca  22870700                                                          ----------->GT1                                               ----------->GT1                                              <---------TOE2(3)                                              <---------TOE1(3)    --------->At4g35610         --------->ANAC58         <---------ARR11(3)     <----------ID1         --------->ANAC46         --------->ARR14(2)   --------->DAG2 -------ZAT6                      <---------ARR14(2)  --------->DAG2                              <-- -----ANAC46        <---------At4g35610       --------->DAG2       <---------At4g35610          ----- ---ZAT14--------->ANAC58         --------->ARR11(3) ---------->DOF2            <---------------AtSPL8   gtgttcaatccaagcgattttcaactggtgagagactatcttcgaaataaggttgaaaaggggcaaaacagctccataagagattgtaccaagtcgagtt  22870800  Previous    Next  AGI:  At1g61870.1    Description:  PPR336 (PENTATRICOPEPTIDE REPEAT 336). similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G11630.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77919.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 22868669    to: 22870280    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g61880.1    Description:  pre-tRNA. tRNA-Trp (anticodon: CCA) Range:  from: 22870423    to: 22870494    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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