Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <---------ALFIN1                --------->DEAR3(1)           ------>ZmHOX2a(1)                --------->AtMYB61         ------>MYB46(1)               --------->MYB46(3)         ------>MYB83                                              -       <-----------GT1                  --------->AtMYB61                                        ---- ---------WOX13(1)         <-------TEIL <---------ALFIN1            <----------DOF2            ------ ------YAB1  --------->AtMYB61   <---------ANAC58         <------ZmHOX2a(1)                    <----- ->KAN4(2)  --------->MYB46(3)   <---------ANAC58      <---------LBD16                  --------->TOE2(3)   tcattgattttacgaccaccaccttcagttacattacgagcaccatccttccacttatcaggaactatcactttcgataacttcttctcacctaaaatta  22817400                                                             <---------TOE2(3)                                                       --------->REM1(1)                                                     ------>ZmHOX2a(1)                                                    --------->TOE1(2)                                                   ------>ZmHOX2a(2)                               --                                                  <------ZmHOX2a(2)                              ====                                                 <---------ARR11(3)                              <---                                                 --------->ARR14(2)                              <--- ---------->GT1                                  <---------ARR14(2)                              ---- ------>DOF2              <-------TEIL           --------->ARR11(3)                             ----- --->AHL20(2)          ----------->GT1          <---------GLK1(1)                               <---- ----AHL20(2)         --------->DAG2            --------->GLK1(1)         --------->ANAC46     ------   aaagataaaaacaaattgagtcaaaaggttcatactttgaactaaattagagatcctacaactagggtttcgatctaagaaaccaaaatcgaatcagaga  22817500  <---------AHL20(1)  --------->AHL20(2)  <---------AHL20(2) --------->AHL20(2)                                            --------->ANAC58 ------->TOE2(3)                                               --------->ANAC58 ===================HOX2a_HOX2a                         <---------ARR14(2) ---ZmHOX2a(2)                                          --------->ARR14(2) ------YAB1  --------->LBD16                           --------->GLK1(1)                            - ----->ICU4----------->RAV1(2)              --------->MYB52(1) --------->ANAC46           --------->AHL20(2) ---->ARR11(3)      --------->ANAC55(2)  --------->ANAC58    --------->MYB52(1)     --------->YAB1--- -----ARR11(3)      <---------ANAC55(2)  --------->ANAC58   ------>ZmHOX2a(1)    --------->WOX13(1)<- --->GLK1(1) ------>ZmHOX2a(1)  <---------TOE2(3)  --------->YAB1              <-------TEIL       <--   tcattaaatttcttcctgaaacatgtaatcgattaagctagaaacgaaacgaatcacaaatcctaacgccaatagtatagattcaattagaattaaaacc  22817600           <---------WOX13(1) ---------------->AGL3                                  ------->TEIL ------>ARR14(2)                               --------->ATHB12                    <<<<<<<<<TBF1 -----ZmHOX2a(2)     --------->YAB1           <---------YAB1            --------->ANAC58      ------- -------ARR14(2)  --------->WOX13(1)---------->DOF2  <---------WOX13(1) --------->ANAC58 --------->LBD16   gatccaagtatagattgattcaattagaatatggaattcaaagagaagattattgatggacttacacttatcgcaaaccatcttcttcttccgagagaga  22817700                                                                                                    -                                                                                                    <                                                                                                   <-                                                                                                <----                                                                                               <-----                                                                                          <---------ARR11(3)                                                                                          --------->ARR11(3)                                                                                          --------->AHL20(2)                                                                                          <---------AHL20(2)                                                                                          <---------AHL20(1)                                                                                          --------->AHL20(1)                       <---------ATHB12                                                  --------->AHL20(2)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <<<<<<<<<GATA-1 <-------             --------->MYB52(1)                                        --------->ICU4--------->AHL20(2)          --------->TOE1(3)                   <----------ID1   --------->ALFIN1      <---------AHL20(2) ---->GT1 --------->TOE2(3)              <---------ZAT6   --------->MYB52(1)<-----------GT1<---------AHL20(2)   aatatgaagaaaccctaacgcctaaatcaattcgaatgggttagagttacgacgaaaacttatcggtgttgaaatttttatctatgtttaaatatatttt  22817800           <---------ARR14(2)        --------------->AGL15        --------->HSFB2a(2)                                                                      ----        <---------HSFB2a(2)                                                            ------->PIF5        <---------------AGL15                                                          ------->MYC2       <-----------------AGL1                                                          <-------PIF5       <-----------------AGL3                                                          ------->MYC4       <-----------------AG                                                            <-------MYC4       <-----------------AGL2                                                          <-------MYC2       <---------LBD16                                                                 ------->MYC3--   <----------DOF2                                                                     <-------MYC3--  --------------->AGL15                                                               <---------O2---  <---------------AGL15                                                               --------->O2=== ----------------->AG                                                                 --------->PIF3(3) <-----------------AGL1                                                               =============== <-----------------AGL2   <---------GLK1(1)                          --------->ANAC58 <---------TGA1a --------->ID1            --------->GLK1(1)                     --------->ANAC46      --------->TGA1a -----------GT1          <---------ARR14(2)                  <---------AHL20(2)--------->ICU4-------- ----------GT1    *TSS   --------->ARR14(2)              <---------RVE1(1)----------->GT1   <-------TEIL --------------------ANAC81                           <---------TOE1(2)   --------->YAB1--------->ALFIN1 ----AHL20(2)    ---------->DOF2                      <---------TOE2(2) ------->TEIL  --------->ANAC46 --AHL20(2)--------->ARR14(2)    ----------->GT1  ----------->HVH21  --------->ANAC58 <---------PIF3(3)   ttttccttttctggatttggaaagtcggatatgtctcgtcaaaactcatagcctcacaggtattttatgccacgaatcgtaataatccacgtggtacatc  22817900                           --------->TOE2(2)                 ------->PIF5                 ------->MYC4                 <-------MYC2                 ------->MYC3                 <-------MYC3                 ------->MYC2                 <-------PIF5                <---------PIF3(3)                --------->PIF3(3)                <---------TGA1a                                                       --------->At5g28300                ===================MYC_MYB                                           ----------->GT1                <---------O2                                                        <----------ID1                --------->TGA1a                                                   <---------DOF5.7(2)         --------->HSFB2a(1)                                                      --------->MYB52(1)    --------->AHL20(2)     --------->TOE1(2)                                     <---------WRKY38(1)    --------->YAB1         ------->GAMYB                                         <---------WRKY12   ----------->TBP--------->ALFIN1                                            --------->LBD16   <---------ATHB12       --------->MYB46(3)                                 <---------HSFB2a(2) ----->WOX13(1) --------->O2                       --------->ARR11(3)        --------->HSFB2a(2) ------->MYB46(3)<-------MYC4                      <---------ARR11(3)       <---------LBD16     <---- ---------->CBF --------->ANAC46                   --------->ARR14(3)    <---------GLK1(1)      <---- ----->P <---------HSFB2a(1)                    <---------HSFB2a(2)      <----------DOF2       <----- =========================MYC_MYB               --------->HSFB2a(2)     <---------ANAC58  --------->ARR14(2) ======MYC_MYB<---------ALFIN1            <---------ARR11(3)            <---------ANAC58  <---------ARR14(2) ->REM1(1)  <----------------PIF3(2)      --------->ARR11(3)      --------->CCA1(2) --------->ANAC46   aaccaataaaaacgttccacgtggtacaaccagcgagataccaagaacttcgagaccttcttctccagatagaggctttccggtaaacggcaaataccct  22818000                        ------->TEIL                        <---------ARR14(2)                        --------->ARR14(2)      ------------>CBF                        --------->GLK1(2)      ----------->RAV1(1)       <----------DOF2 <---------CCA1(2)      --------->MYB46(3) -----DAG2          --------->HSFC1(1)    <------ZmHOX2a(2)              <---------CCA1(2)       ---- ------DOF2         --------->HSFB2a(2)  <---------ARR11(3)     --------->YAB1                 ------ ----DAG2           <---------HSFB2a(2)  --------->ARR11(3)    <---------ATHB12         ------>ZmHOX2a(1)   tttccttcactttcttcgtcttctcgaatctgagagaacgagagatcaacaacaatggcgctcaaatcaaaactcgtctctcttctcttcctcatagcaa  22818100                                                  ------>ZmHOX2a(2)                                                 <------ZmHOX2a(2)                                                <---------GLK1(2)                              <---------GLK1(2) <---------ARR11(3)                              --------->ARR14(2)<---------ARR14(2)                              <---------ARR14(2)--------->ARR11(3)                    <-------TEIL                <---------ARR14(3)                      --------->ARR14(2)                 <---------ZAT2                 --------->ARR14(3)                      <---------ARR14(2)                 --------->At4g35610            <-----------ARR10                       --------->GLK1(2)                 <---------HSFB2a(1)            --------->ARR14(2)                 --------->ANAC58                 <---------At4g35610            --------->AGP1     ------->TEIL  --------->MYB46(3)                 --------->ZAT2                <---------CCA1(2)  <---------CCA1(2)--------->ANAC58                 <---------HSFC1(2)     <---------YAB1       ------->TEIL  <---------At4g35610   --------->YAB1--------->HSFB2a(1)--------->ARR14(2)     ------->GAMYB   --------->At4g35610<------ ----->ZAT6      --------->HSFC1(2) <---------ARR14(2)    --------->MYB46(3) <------ZmHOX2a(2)<------ ----->RAV1(1)  <---------TOE1(2)   <---------GLK1(2)     <---------MYB52(2)--------->AGP1<----------   cactatcatccacattcgcagcttcgttttccgattcggattccgattcagatcttctcaacgaacttgtatctctcagatcaacaagcgaatcaggcgt  22818200                                                ------>NtERF2                                               <---------ALFIN1                                               --------->ANAC58                                               --------->ANAC46                                             <---------ALFIN1                                          <----------DOF2                                        <---------At4g35610                                     -----         ----------->HVH21              --------->At4g35610                                   <------         --------->WRKY12           --------->TOE2(2)         --------->ANAC46   --------->ANAC46 ---ANAC58                      ------>ZmHOX2a(1)   --------->bZIP60(2)          --------->ANAC58 ---ANAC58        <---------GLK1(2)--------->MYB46(3)    ------>ZmHOX2a(1)       --------->ANAC58 -RAV1(2)--------->WRKY38(1)   <---------MYB59 --------->ANAC58 <---------MYB52(1)         --------->ANAC46   aatccatctcgatgaccatggaatctcaaaattcctaacctccgcttccacgcctcgtccttactcgttactcgtcttcttcgacgctactcaactccac  22818300  Previous    Next  AGI:  At1g61780.1    Description:  postsynaptic protein-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO69687.1); contains domain PTHR11800 (PTHR11800); contains domain PTHR11800:SF1 (PTHR11800:SF1) Range:  from: 22816280    to: 22817818    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g61790.1    Description:  OST3/OST6 family protein. similar to OST3/OST6 family protein [Arabidopsis thaliana] (TAIR:AT1G11560.1); similar to unknown [Brassica rapa] (GB:ABB97041.1); contains InterPro domain OST3/OST6 (InterPro:IPR006844) Range:  from: 22818055    to: 22819095    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version