Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------->GLK1(2)           >>>>>>>>>TBF1     --------->HSFB2a(2)     <---------HSFB2a(2)                                           ------>ZmHOX2a(2)    ------>ZmHOX2a(2)                                             <------ZmHOX2a(2)   <------ZmHOX2a(2)                                             --------->ARR11(3) --------->ANAC58  --------->ARR11(3)                                             <---------ARR11(3) --------->ANAC58  <---------ARR11(3)      --------->ANAC46                   ---------->DOF2    --------->ANAC58  <---------AGP1          --------->ANAC58               --------->GLK1(2)      --------->ANAC58 <---------CCA1(2)        --------->ANAC58              <---------GLK1(2)       --------->ANAC46   attagatctcgaagaagaatcgactaagacgaaactaaatttcgatcgaagaaactaagaatctaaagatcgcgatagcaataagcaagtaccaattgat  22790300                                                                                            ------>MYB46(1)                                           ---------->DOF2                                  ------>MYB83                                     <---------WOX13(1)                       --------->ANAC58                                  <---------YAB1                              --------->ANAC58                            <---------ARR11(3)                            --------->YAB1  --------->MYB46(3)                            --------->ARR14(3)                     ----------->HVH21      <---------MYB59         <------ZmHOX2a(1)  --------->ARR11(3)                   --------->TOE2(3)     ------->GAMYB        ----------->GT1     <---------ARR14(3)               --------->HSFB2a(1)      <---------MYB52(2)       <---------TOE2(3)<------ZmHOX2a(1)<---------YAB1      <---------HSFB2a(1)      --------->MYB46(3)   agagagagtaaggaaattaagagagaggaagaccttgcgattgatgaaagtgaattgagaagaacatccttgacaatgagaagcatcaacgacccaacta  22790400                                                                                   ------->TEIL                                                                                <---------MYB52(2)                                                                           --------->ANAC58                                                                           --------->ANAC58                                                                           --------->ANAC46                                ------>ZmHOX2a(2)                         ------>NtERF2                               <------ZmHOX2a(2)                          <------NtERF2                              --------->ARR14(2)                          --------->LBD16                              <-----------ARR10                          --------->DEAR3(1)                              <---------ARR14(2)                       ------>NtERF2                      --------->At5g28300                              --------->LBD16                 <---------DEAR3(1)                                    <---------ATERF1(1)                --------->ATERF1(1)           <-----------GT1         --------->ANAC46              <---------ANAC58<---------ARR11(3)                      --------->DEAR3(1)              <---------ANAC58--------->ARR11(3)                      <---------ALFIN1  ------>ZmHOX2a(1) <---------DEAR3(1) ----------->RAV1(1)          <---------ATERF1(1)  ====================================HOX2a_HOX2a                   ------>ZmHOX2a(1)               -  =====================================HOX2a_HOX2a          <<<<<<<<<TBF1--------->RAP2.3(2)        < --------------->AGL15<------NtERF2 --------->HSFB2a(2)<---------GLK1(2) --------->RAP2.6(2)<--------   tttcctcttagagatggcttcggcggtaatccgatcttctccaacattttcccgtctgattcttcttctcctccgccgcgaaacgaacttggttttgatt  22790500                 ---------->DOF2             ----------->GT1           --------->GLK1(1)          --------->ARR14(2)          <---------ARR14(2)                                                                    <----        --------->LBD16                                                                     ---------       --------->HSFB2a(2)          >>>>>>>>>TBF1                                        --------->AHL20(2)       <---------HSFB2a(2)<---------At4g35610                                           <---------AHL20(2)      <---------LBD16 <XXXXXXXXXXXXXXXXXXXXMIR858                                    --------->AHL20(2)     --------->MYB52(1) *TSS --------->At4g35610                    <------------CBF<---------AHL20(2)  ------>ZmHOX2a(2)   <------ZmHOX2a(2)      >>>>>>>>>TBF1       ------>ZmHOX2a(1)  --------->AHL20(2) -------->ARR11(3)   <---------ARR11(3)   >>>>>>>>>TBF1 <----------DOF2      --------->CCA1(2) <----- ---------ARR11(3)   --------->ARR11(3)>>>>>>>>>TBF1    <---------DAG2 <-----------HVH21--------->AHL20(2) -YAB1----------------->AGL1 <---------At4g35610>>>>>>>>>TBF1 ------>ZmHOX2a(1) --------->AHL20(2)   ttgatcttaccggaaatgtaaaagatcgagcagatgaagaagaagaagaagaagaatacttttcctcctctattgtcagatataaaataaataattttaa  22790600                                                        <--------HAHB4                                                        --------->ATHB12                                                        --------->ATHB51                                                        <---------ICU4                                                        --------->YAB1                                                        -------->HAHB4                                                        <--------ATHB1                                                       <---------YAB1                                                       <---------ATHB51                                                       --------->AHL20(2)                                                       --------->ICU4                                                     --------->YAB1                                                    <---------ATHB51                                                ------------>CBF                                               --------->ANAC58                                          ----------->TBP                                         --------->AHL20(1)                                 <------ZmHOX2a(1)  --------->ICU4                         --------->ANAC55(1)   --------->ANAC58                         --------->ANAC46<---------AHL20(1)                         <---------ANAC55(2)  --------->DAG2                    <---------ANAC58 -------------AGL1       --------->ANAC55(2) ---------->DOF2                 *TSS<----------DOF2 >YAB1          <---------At4g35610      <---------ARR11(3)                <---------ICU4 ------GT1      --------->At4g35610 ------------>CBF<---------ATHB12------->TEIL<---------ANAC58   ctaatacggtatcgttttagctaaaacacataataggactcaatatataaagcaataataattagacatgaaactaatttttgctttgagacgagaacga  22790700                                                                                               ------                                                                                   <---------MYB52(1)                        ------>ZmHOX2a(2)                                          ---------->ID1                       <------ZmHOX2a(2)                                          <-------GAMYB<-----                      --------->ARR11(3)                               ------>ZmHOX2a(2)   <---------ANAC58            --------->ANAC58                                         --------->ARR11(3)    <---------ANAC58            --------->ANAC58                                       <---------YAB1--------->MYB52(2)        --------->CCA1(2)  <----------DOF2                  --------->DOF5.7(2)<---------MYB52(1)       <----------ID1 <---------ARR11(3)      ---------->DOF2 <---------DOF5.7(2)<---------MYB46(3) -   ---------->DOF2---------->DOF2 ----------->GT1        <-------TEIL<---------ARR11(3)  <-----------GT1   agttagaaagagacaagccctaaagatcgctttgagacgataaactcttaaagtttcgattcgttcacgatgatcgtccctgttcgttgttttacttgtg  22790800                        <---------------AtSPL3           <-----------GT1 <-----------GT1       <---------AHL20(2) --->HSFB2a(2)          --------------->AtSPL8 --------->AHL20(2)                                   < ----HSFB2a(2)       <---------DAG2            <---------AHL20(2)                      <---------TOE2(3) -------->DAG2       <----------DOF2    ----------->GT1    ----------->HVH21   ---------->ID1    ----   gaaaggtttgttttttcttctctctttttgtacgatttcgatttgttatatatatatgtgtgtgacaaatctctagggtttgtagtattgagatttatga  22790900                                                                                    --------->ANAC58                          <---------WOX13(1)                                        --------->ANAC58                        --------->ATHB12                                   ----------->HVH21                     <------MYB83--------->MYB46(3)                      <---------At4g35610 ----------DOF2      <------MYB46(1)   <----------ID1        <-----------RAV1(2)  <--------P --->TEIL<---------YAB1 <---------MYB46(3)       --------->TOE2(3)       --------->At4g35610        <   agcttttgtttatgattttttgtaggtgattgggaacaaatgggacacataccttgaacttctccaggctgattacgctgaagggtaagcgatatatagt  22791000                   --------->ATHB51                   <---------ICU4         ---------->DOF2                      --------->TOE1(2)----------------------->TaNAC69(2) --------->ATHB12 <---------YAB1  <---------AHL20(2)        ------->TEIL --------->YAB1   --------->ICU4 <---------AHL20(2)     <---------WOX13(1)         ----------->HVH21 ---------YAB1  --------->YAB1   --------->AHL20(2)   --------->ATHB12     ------->TEIL   ttatgattagaaaaagaatcataatttgtgagaaatttttttggtgaacatgagagtgattgaatcttggaattttgaacgttttctgacattttcttag  22791100                                                                                              <------                                                                                              <------                                                                                       <---------ARR11(3)                                                                                       --------->ARR11(3)                                                                         ---------->DOF2      <------                                                                        <---------WRKY45 ------>ZmHOX2a(2)                ---------->DOF2                                    <---------ZAT14 <---------AtLEC2            --------->AtLEC2                       --------->ATHB12--------->ZAT14 <---------ANAC58            <---------ANAC55(2)                   --------->ICU4<---------ANAC46   <---------ANAC58   ttgaaatgagagtcatgtaaaagatgaaacaatagtggaacatgacaatagaatgatttgatggttttgtgtagtcaaagagattgcatgatcttgtctt  22791200  Previous    Next  AGI:  At1g61690.1    Description:  zinc ion binding. similar to zinc finger (FYVE type) family protein [Arabidopsis thaliana] (TAIR:AT1G20110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66812.1); contains InterPro domain Zinc finger, FYVE-type; (InterPro:IPR000306); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Tetratricopeptide TPR-1 (InterPro:IPR001440); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 22786272    to: 22790524    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g61700.1    Description:  DNA-directed RNA polymerase II, putative (RPB10). Identical to DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Arabidopsis Thaliana] (GB:Q9SYA6); similar to DNA-directed RNA polymerase II, putative [Arabidopsis thaliana] (TAIR:AT1G11475.1); similar to unknown [Picea sitchensis] (GB:ABK20909.1); contains InterPro domain RNA polymerases, N/8 Kd subunits; (InterPro:IPR000268); contains InterPro domain Homeodomain-related; (InterPro:IPR012287) Range:  from: 22790677    to: 22791998    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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