Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               --------->YAB1                            --------->AHL20(2)                           <---------YAB1                          --------->TOE2(3)                        <---------YAB1                                                              -                  --------->AHL20(2)                                                                <      <--------ATHB1--------->AHL20(2)                                                             --      --------->YAB1--------->YAB1                                                               <---     <---------ATHB12  <---------ARR11(3)     ----------->GT1                                    <---     <---------ATHB51  --------->ARR11(3)   <------ZmHOX2a(1)                    ------->TEIL    <--- ------>DOF2      --------->AHL20(1)      <---------TOE2(3)                  <---------TOE2(3)  <---- -->YAB1         --------->YAB1      ------->TEIL  ---------->DOF2--------->ARR11(3)  <---------AHL20(2)   aaagccaataatagactaaaaataatatcattaaaaatgaatatgaggatgtcaaaagtgtgtatatagataatgtattgatgtatattttatgctcttg  22720900      <-------GAMYB     <------MYB46(1)     <---------MYB46(3)     ----------->GT1     <------MYB83    <---------AtMYB61   <--------P  <---------ANAC58  <---------ANAC46  <-------GAMYB                     --------->ANAC58  <---------ANAC58                  --------->ANAC46                       <---------GLK1(1) <------MYB46(1)                    --------->ANAC58                       --------->GLK1(1) <---------MYB46(3)               --------->AtMYB61                       <---------ARR14(2) <---------DEAR3(2)               <---------ALFIN1------>ZmHOX2a(2)       --------->ARR14(2) <------MYB83                  --------->ANAC46   ==============================HOX2a_HOX2a -------->MYB55(2)            --------->MYB46(3)  ===================HOX2a_HOX2a ---------MYB46(3)          ------>MYB46(1)  <---------WOX13(1)          <------ZmHOX2a(1) ------->ALFIN1             --------->ARR14(2)  --------->ARR11(3)      --------->ICU4 ------ANAC58               ------>MYB83  --------->ICU4  <---------ARR14(2)                 <------- ------ANAC46             --------->AtMYB61--------->ATHB12   ------>ZmHOX2a(1)    <----------DOF2 ------ANAC58<-----------GT1<---------ARR14(2)  <---------ARR11(3)   <--------P<---------ANAC58  ---- -----MYB46(3)<---------At5g28300--------->MYB46(3)       --------->ARR14(2)   <---------ANAC58<-----   ggtgggttggttaattcactgttttccacctatccaccacggcaacgattgatcttctcgcatcctctctggtaaggatttgcttctttcttcttgcagg  22721000                                                                 <---------ANAC58                                                                 <---------ANAC58                                                               ------->TEIL                                                               --------->ARR11(3)                                         =================HOX2a_HOX2a              <---------ANAC58          <----------DOF2                <------ZmHOX2a(2)    <---------CCA1(2)    <---------ANAC58      --------->ZAT18            =========================HOX2a_HOX2a              <-------GAMYB     --------->ALFIN1            ------>ZmHOX2a(2)          <---------ANAC55(2)   <---------MYB46(3) ----RAV1(2)                    --------->GLK1(1)           --------->ANAC55(2)--------->TOE2(3) ----->ALFIN1                  --------->ARR11(3)          --------->MYB59<------NtERF2 ----At4g35610---------->ID1   <---------ARR11(3)  <------ZmHOX2a(1)  <---------ZAT18   tgttagggtgggctttgtcacaatgtacagcatgatctccacgatcgatagcaggataagttatgtatcttgtggcctcaaccttggttgcagcaagggc  22721100                                                                                                   <-                                                                                                  ---                                                                                              <------                                                                                      <---------AHL20(2)                                                                          --------->LBD16 --------->AHL20(2)                                                             <---------YAB1   --------->ICU4 --------                                                           --------->ATHB51   <---------ATHB12-------                                                          <---------YAB1 --------->ANAC58 <---------AHL20(1)                              --------->TOE1(3)        <---------AHL20(2)--------->ANAC46 --------->AHL20(1)                              --------->TOE2(3)        --------->AHL20(2)--------->ANAC58 <---------AHL20(2)   --------->ZAT6    --------->CCA1(2)            --------->LBD16  <----------DOF2--------->AHL20(2)  --------->ZAT18  --------->CCA1(2)  <----------DOF2  <---------YAB1   <---------LBD16--------->YAB1   caagaacactacgagagcaagagataagataaccttgatacttttagacatccccatattattattgttctttatccgcaataactaaataataaattta  22721200          --------->ATHB12  <---------ZAT6         <---------YAB1 <----------DOF2                                                            <-     ------->TEIL   --------->ZAT18                                                                -- --------AHL20(2)   --------->ZAT14                                                              <--- ------>AHL20(2)    <---------ZAT14     <---------ARR11(3)                   <---------YAB1  <------MYB83 ---AHL20(2)        <---------ZAT18    <---------CCA1(2)                   *TSS              <------MYB46(1) ->AHL20(2)       <---------GLK1(1)--------->AHL20(2)                     --------->ICU4   <--------P -->AHL20(2)    <------ZmHOX2a(1)  <---------AHL20(2)            <----------DOF2         --------->MYB52(2)   taaaatgaaccctgattaggagttcactttgtgttatttatatatctaatattgtatcggaaattggctctatgggattatgaacaagcgctagttggtg  22721300                                                          ------->GAMYB                                                         --------->MYB46(3)                                                       <-----------GT1                             --                                                <---------ICU4                                     <-                                                --------->ATHB12                                  <--                                    <---------YAB1<---------YAB1                                  --- ----------TBP                 ----------->GT1 <---------YAB1                             <---------ANAC58 ------->AHL20(2)    <---------GLK1(1)         --------->ICU4                  ------->TEIL       <-- --------TBP         --------->GLK1(1)       --------->YAB1     <---------AHL20(2)        <---------ANAC58   tttatatagtagagaacatatggatttcaaacttggttatatttggatgatgattagtaaccacatatattttagtaaatgaatgttgtttttcttgagt  22721400                             <---------ANAC46                             <---------ANAC55(2)                             --------->ANAC55(2)               <---------ANAC58                                                <------ZmHOX2a(1)               <---------ANAC58                                              <---------TOE2(3)  -----        <---------ZAT6     --------->CCA1(2)                                 <---------TOE1(3) <----- ------------->AGL15    --------->MYB52(2)                           <---------AHL20(2)   --------->HSFB2a(2) --------------AGL15--------->bZIP60(1)                              <---------ATHB51     --------->HSFC1(1) ---------------AGL2--------->ANAC55(2)                              --------->AHL20(2)   <---------HSFC1(1) -------------->AGL3<---------ANAC55(2)        ---------->DOF2   --------->AHL20(2)       <---------HSFB2a(2) ---------------AGL3<---------ANAC46   <----------DOF2           <---------AHL20(2) ----------->GT1--   tccatatatagtgtttgtcttgacgtaagttacgcgaactacttttaaacaaagacgactcgtcgatttaaataattctaaggaaatggtttctagaatt  22721500                                     <-----------RAV1(1)                                    <---------TOE2(3)                  ----------->GT1                        <---------GLK1(2)                         --------->ZAT2                        --------->ARR11(3)                        --------->At4g35610                        <---------ARR11(3)                        <---------At4g35610             <-------TEIL<---------RVE1(1)                        <---------ZAT2          <---------ANAC46     <---------YAB1                   ------->PIF5 ---->YAB1<---------ANAC58   <---------AHL20(2)                 <-------PIF5 <---------ICU4 ----YAB1 <---------ANAC58  <---------YAB1       <---------ICU4----------->RAV1(2)  ------>ZmHOX2a(1) --------->GT1    <---------YAB1 <---------AHL20(2)     ------>ZmHOX2a(1)   --------->ICU4   atagtaaaatttgcgtacatatgaaagatttttatttttatgttgcattcaacatttcctactgcccctgctgaagtaataagttcctcgactggagttt  22721600                                                                               --------->ANAC58                                        ----------->GT1                        --------->ANAC46     <                                     <----------DOF2          --------->AHL20(2)                    -              <---------ANAC58     <-------TEIL ----------->GT1      ----------->GT1             >>>>              <---------ANAC58    <---------ARR14(2)       <----------DOF2     --------->ANAC58  >>>> <----------DOF2                  --------->GLK1(2)---------->DOF2  ----------->GT1              >>>>   gctctttagcatacttacttgaagggttttggagaggttcttttgtaaaaatgtaaagagactttaaaataggttaaaaacaagcaacgtcttgctagat  22721700                                       ------>ZmHOX2a(2)                                      <------ZmHOX2a(2)                                     <---------ARR14(3)                                     --------->ARR14(3)                                     <---------ARR11(3)                                     <---------ARR14(2)  ------>MYB83                       --------->ARR14(2)  ------>MYB46(1)                    --------->ARR11(3) ---------MYB59                     <------ZmHOX2a(1)                                     --------->ANAC58 -------------->AGL15         --------->ANAC58      --------->GLK1(2)                     --------->ANAC58 >>>>>>WRKY26                 --------->ANAC58      ------->TEIL                   <---------MYB46(3) >>>>>>WRKY43              ----------->HVH21        <---------ARR14(2)        <---------MYB52(1) >>>>>>WRKY38              ----------->TGA1         --------->ARR14(2)       <----------DOF2      ---   gaccaaatattgaatccaaaaattcaagagtgacgctaggatcttgttagaacgaatccattttcatcttgttcaactcctttagtggatgcaagaaatg  22721800  Previous    Next  AGI:  At1g61566.1    Description:  RALFL9 (RALF-LIKE 9). similar to RALFL8 (RALF-LIKE 8) [Arabidopsis thaliana] (TAIR:AT1G61563.1); similar to MF14 [Brassica rapa] (GB:ABP73254.1); contains InterPro domain Rapid ALkalinization Factor (InterPro:IPR008801) Range:  from: 22720725    to: 22721275    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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