Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             <---------ARR11(3)                                                           --------->ARR11(3)                                                          <---------GLK1(1)                                                 --------->ATHB12                                                <---------YAB1         <---------ARR11(3)                   --------->YAB1            ----------->HVH21         --------->ARR11(3)           --------------------->WRI1        ----------->TGA1 <----------DOF2         --------->GLK1(2)             <---------GLK1(2)  --------->GLK1(1)           <----------DOF2   tccaagtagagaaccttgttctcatcatcttcataaaacaagaatgtctgacgattggcgatatctttcttaagatgttgaattgctgctttgtataagg  22700600                                                --------->At4g35610                                                <---------ZAT2                                 <-----                                     <---------ANAC58                                      <---------ANAC58                           --------->ZAT14      --------->ZAT2              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 --------->ANAC58    <---------ANAC58                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 --------->ANAC58   <<<<<<<<<<ABI3                <---------LBD16          <---------ANAC58           ---------->DOF2 <---------ZAT14      <---------At4g35610     <-------TEIL   <------MYB46(1)    <---------ALFIN1      --------->ALFIN1<---------ANAC46 <---------MYB52(2)       xxxxxxxxxxxxxxxxx  <---------ALFIN1--------->ATERF1(1)<---------AtLEC2  <---------At4g35610------->TEIL <---------MYB46(3)  --------->AtMYB61  <------NtERF2  <<<<<<<<<<FUS3----------->HVH21    --------->ALFIN1<------MYB83--   gagaccacacccttatagcaggcagcgagtgtagaatttgcatggctcgaagctgacagcaactaaactcagggtgcatctctattagttggttcttgtg  22700700               ----------->HVH21              <-----------HVH21             <---------ANAC58             <---------O2             --------->O2             <---------ANAC55(2)             <---------ANAC58             --------->ANAC55(2)           <---------At4g35610         <-----------GT1            <-----------GT1                                <-----------GT1       <---------AHL20(2)      ------>ZmHOX2a(1)                             <----------DOF2      --------->AHL20(2)      --------->TOE2(3)<---------ALFIN1             ------>ZmHOX2a(2) ----ANAC46 <---------LBD16 <---------YAB1 --------->At4g35610            <---------ARR11(3)        < xxxxx>smallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           --------->ARR11(3)        < -------->DOF2--------->LBD16 --------->TOE1(3)--------->REM1(1)    --------->ARR11(3)     <---------   ggaaagaattttatcccgtgactcgatactatccttaatcacctctgctacaccttgttcatcttgtacagaccttgatcttttcttactactctttgac  22700800                                                                                              <------                                                             --------->YAB1            <---------ANAC58                                                   --------->At4g35610                 <---------ANAC58                                                   <---------At4g35610             ------>ZmHOX2a(2)                                             --------->ARR14(2)                   --------->GLK1(1)                                             <---------ARR14(2)                   --------->At4g35610                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------At4g35610                               --------------->AGL15  --------->At4g35610         <---------GLK1(1)                               <----------DOF2<---------GLK1(1)                   <------ZmHOX2a(2)                              <---------ANAC58--------->CCA1(2)                  <---------ARR11(3)                              <---------ANAC46<----------TaMYB80                 --------->ARR11(3) ---------ANAC58         <---------ICU4 <------ZmHOX2a(1) --------->REM1(1)      --------->ARR14(2) < ---------ANAC58       ----------->RAV1(1)  <------ZmHOX2a(1)<---------ICU4      <---------ARR14(2) - -DOF2       <---------PCF5   <---------ANAC58--------->GLK1(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ttacttgaatatgagggaccattgccaacattgctttgagtaggaaggatatgcgctgcttcatcatcatctagatttagagggatctgccttgattcac  22700900                                 --------->YAB1                          <-------GAMYB                         <---------ANAC46                      ------>ZmHOX2a(2)                     <---------GLK1(1)                     <------ZmHOX2a(2)                     --------->At4g35610                                                            -                     <---------At4g35610                                                           <-                     --------->GLK1(1)                                                             <-                    --------->ARR11(3)                                                             --                    --------->ARR14(2)                                                            --- -----GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                  <--- ---------ICU4      <---------ARR14(2) --------->YAB1                      --------------->AGL15<---- -------->YAB1      <---------ARR11(3) <---------ICU4            <-----------GT1    <------ZmHOX2a(1)   catcatcatcttgagttatagggatctgcgttgaatcaccatcatcatcttgatgcattgagtctaatttctcttcaccttgtttaggagcccagccctc  22701000                                                                                         --------->TOE2(3)           --------->ZAT18                                                        --------->ANAC46        --------->GLK1(1)   <----------DOF2                      --------->AHL20(2)      --------->YAB1  <---------ALFIN1         <---------DAG2                        <---------AHL20(2)    --------->ICU4 <---------ZAT14         --------->ARR11(3)                    <----------DOF2    --------->ANAC58 ----->NtERF2            <---------ARR11(3)                    --------->TOE2(3)  --------->ANAC58 --------TCP20        ------>MYB83                           <---------YAB1     <-----------RAV1(2) --------TCP16(1)     ------>MYB46(1)                      <---------CCA1(2)    <---------ALFIN1 ------->PCF2   <---------ZAT14                  >>>>>>>>>>>>>>>>>LFY       --------->ZAT2 ------>At4g35610   <---------MYB59    --------->ARR14(2)<---------ANAC58   --------->At4g35610 ------ATERF1(1)--------->ZAT14        *TSS      <<<<<<<<<<<<<<<<<LFY       <---------ZAT2       ---- -----DEAR3(1)--------------->AtSPL8   <---------ARR14(2)<---------ANAC58   --------->GLK1(1) -------   ggctccactgatatgcactgtaccaaataccttttccatcaaatccacatttgccactggcttatctttaaatttccgagctccaggccattcttaacaa  22701100                                    --------->MYB46(3)                                            ---                               <---------HSFB2a(2)                                              -----                               --------->HSFB2a(2)                                              <----                               --------->HSFC1(1)                                             ------>MYB83                               <---------HSFC1(1)                                             ------>MYB46(1)                              ======================HOX2a_HOX2a          --------->TOE2(3)   --------                            --------->ARR11(3)                           <---------MYB59    ---------      <---------KAN4(2)     <---------ARR11(3)                        <-----------GT1       ---------  --------->YAB1      --------->ARR11(3) ---------->DOF2       --------->GLK1(2)        <xxxxxxxxxxxx -------->CBF      --------->YAB1 <<<<<<<ZML2<------ZmHOX2a(1)<---------GLK1(2)    <-------TEIL<----- -->MYB46(3)  ------------>CBF------>ZmHOX2a(2)             <---------TOE2(3)     <---------MYB52(1)   acaatgagaataaacaaacaatgagaacttgatctagaacaaacaaaggacagaagaagtttaagaatctatataccttacaccgttcattccaccaatc  22701200 ------>At4g35610                                        <---------GLK1(2) ---->YAB1                                              <---------At4g35610 -----ICU4                                              --------->At4g35610 ->WOX13(1)                                             <---------ZAT2 >AtMYB61                                    <-------GAMYB >MYB46(3)                                  <-----------RAV1(1) xxxxxxxxxxxsmallRNA(le3)                <---------ARR14(2)         --------->TOE1(3) ----ATHB12                              --------->ARR14(2)         --------->TOE2(3)     -----------   atcagacattcttatgctcccatttggatagtaaccaagaccggttctgttgtgagtcagcttcttaaaaccttcatactgcttcttacaagtagtaaac  22701300                                                                                      <---------YAB1                                                                                   --------->GLK1(2)                                             <---------ARR11(3)            --------->ATHB12      <---                                             --------->ARR11(3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)            <-----------GT1          --------->TOE2(3) --------->YAB1     <---------YAB1     ------>ZmHOX2a(1)  ------>ZmHOX2a(2) ------->TEIL ---------->DOF2      <---------YAB1   <XXXXXXXXXXXXXXXXXXXXMIR172C/D >GT1     <-----------GT1<----------DOF2  --------->AHL20(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ttgatcccaaattttctccatgtatgtctttcccataaacctcataaaatctatctataatagtctgtctcccagcatcattgacattctgattcctaat  22701400                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                            --------->ANAC58                                                            --------->ANAC46                                                            --------->AtLEC2                ------>ZmHOX2a(1)                           --------->ANAC58         <---------GLK1(2)                                 <---------LBD16       <---------TOE1(3)                             <---------ICU4--------->GLK1(2)   <----------DOF2             <---------TOE2(3)    <---------ATHB12  --------->TOE2(3)   --------->TOE2(3)             <---------YAB1<---------ARR11(3)    ------------- ------ICU4    --------->TOE2(3)               <---------At4g35610<---------GLK1(2)     <------------   atttcctttaagcttctcctcaattcttagttcaaggtagaaacgagtttgctcatcattccacgcaagattcttagttgatcatgtgtttttgtacaaa  22701500  Previous    Next  AGI:  At1g61510.1    Description:  transposable element gene. transposase IS4 family protein, contains Pfam profile: PF01609 transposase DDE domain Range:  from: 22698506    to: 22701039    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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