Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    <-----------GT1                                            <<<<<<<<<<WRKY43                                        <---------WOX13(1)                                      --------->ATHB12                                           <---                                     --------->AHL20(1)                                         <----                                     <---------AHL20(2)                                         -----                                     --------->AHL20(2)                                    --------->AHL20(2)                                 --------->AHL20(2)  --------->HSFB2a(2)                   <---------AHL20(2)                              ----------->GT1    --------->AHL20(2)                     --------->YAB1                             ----------->GT1<<<<<<<<<<WRKY38                         ------>ZmHOX2a(1)      <-----------GT1      ---------->DOF2  <<<<<<<<<<WRKY26     ----------->RAV1(1)--------->TOE2(3)   <--------HAHB4        <---------TOE2(3)----------->GT1       ------->GAMYB  <----------DOF2  -----   <---------ICU4  <---------TOE2(3)<---------AHL20(2)       <-----------GT1  <---------DAG2    <----  <---------YAB1--------->ARR11(3)  --------->AHL20(2)      <-----------GT1<-----------GT1 --------->AHL20(1)   atgtattattacattatagataatgttaagaaagttaaattaattggtcaatttactagaatttaacccacattagtttaccttttcctaaaataaaata  22606400                                          ----------->GT1                                      --------->AHL20(1)                                      --------->AHL20(2)                                      --------->ARR11(3)                             --------->AHL20(2)                                      <---------AHL20(1)                          --------->YAB1                                      <---------ARR11(3)                        --------->AHL20(2)             <-------TEIL    <---------ARR11(3)   <---------YAB1              --------->AHL20(2)   --            --------->CCA1(2)<---------AGP1 <---------YAB1                --------->AHL20(1)       <- ------AHL20(2)              --------->ARR11(3)   <-----------GT1         <---------AHL20(2)       -- -----AHL20(2)      <----------DOF2   <---------AHL20(2)                  --------->AHL20(2)--------- ---->AHL20(2)--------->ANAC58       --------->AHL20(2)              --------->AHL20(2)    <--------- ---->AHL20(1)--------->ANAC46 ------>ZmHOX2a(2)--------->YAB1    --------->CCA1(2) --------->AHL20(2) -----AHL20(1)--------->ANAC58<------ZmHOX2a(2)<---------YAB1 <---------TOE1(3)--------->YAB1--------   aaatttcataagagatacacaactttacatagatctcaaatatattgttattatactcgttgttagggatataaaataaaataaaaataaaaaatggtaa  22606500    <---------AHL20(2)   <---------AHL20(2)                                                                <<<<<<<<<MYB98   --------->AHL20(2)                                                              ----------->GT1 ------->AHL20(1)                                                    --------->ARR11(3) --------AHL20(2)                                                    <---------ARR11(3) ------->AHL20(2)                                                    --------->GLK1(2) -->GT1                                                 --------->ANAC58           <---------YAB1 ------AtSPL8      <---------ANAC46                     --------->ANAC46        --------->ICU4 ->At5g28300 <-------TEIL                               --------->ANAC58       <----------DOF2    <--   ataaaataaatgaagttcatcgtgtgttatcccatgtcgaaattagcatattagtaccacgacaattgcaaaatctttgggcattatgttaaatagactc  22606600                                                                                             --------                                                                                      <------------CBF                                                                                     --------->ATHB12                                                                                    <---------YAB1                                           <----------DOF2                        <---------ANAC46                                   --------->ATHB12              <----------DOF2  <---------ANAC58      --------->ANAC58             <---------ICU4               <---------ANAC58  <---------ANAC58 <-      --------->ANAC58            --------->ICU4                <---------ANAC58  --------->YAB1<----    <---------AtLEC2              <---------YAB1       <---------YAB1           <---------ARR14(2)<-- -------YAB1                   --------->ICU4       <---------YAB1              --------->ARR14(2)<--   atgtttgcaagaaaattgaaaatgggccttgaattgattattgggctttcatttgttattagagtagctttcattcaacgagtatcgtgattgtaagtat  22606700          --------->TGA1a      <-----------------AGL1                                                         --------->TOE1(3)     --------->PCF2                                                                  --------->TOE2(3)     ---------->ID1                                                             <---------ANAC58  --------------->AtSPL8                                                 --------->HSFB2a(2) ->ICU4 <---------ALFIN1                                                 <---------HSFB2a(2) --------YAB1                                                          --------->At4g35610 -----YAB1--------->O2                                        <---------WOX13(1)<---------ANAC58 -------AHL20(2)                      ------>MYB46(1)  ---------->DOF2--------->GLK1(2)        <----- -------AHL20(1)                      ------>MYB83  --------->YAB1   <---------GLK1(2)*TSS     ------   tatttttgtcccacatcggaactataactcgttggagacctatcgagactactataagaaagtgatagacagcatctggaatacttgccttaaactaatg  22606800                                   --------->RAP2.3(1)                                  <---------ATERF1(1)                                  <---------RAP2.3(1)                  --------->LBD16<---------RAP2.3(2)                  --------->At4g35610      ----------->GT1            <---------AHL20(2)                 <---------MYB46(3)<------NtERF2                   <---------ICU4                --------->SPL7   --------->ATERF1(1)               <--------ATHB1                <-----------RAV1(2)------>NtERF2                   --------->ATHB51              <---------SPL7     <---------DEAR3(1)                --------->AHL20(2)             ---              <-----------HVH21  <------NtERF2                     <---------AHL20(2)            xxxx             <---------ANAC58   <------NtERF2                     --------->ICU4          xxxxxxxxxxx   <------ZmHOX2a(1)  ----------->ARR10    --------->YAB1         <---------ATHB12        xxxxxxxxxxx <---------TOE2(3)<---------At4g35610------>NtERF2                <---------ATHB51      xxxxxxxxxxxxx ----ATHB12  <---------ANAC58   <---------LBD16                <------NtERF2   ----------->GT1  xxxxx --->ICU4---------->DOF2     <-----------HVH21                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   agtaaggaaaacaaagcgtccggtgagaaccggtcgcggcgctaatcgtaaaacacaaaattggcgcaataatttatggaggggttataggctggccgat  22606900                                                 --------->ANAC58                                                 --------->ANAC58                                                 --------->ANAC46                      <-----------ARR10        --------->REM1(1)              <----------DOF2              xxxxxxxxxxxxxxxxx>smallRNA(se3)        --------->At4g35610            --------->ATERF1(1)        <---------At4g35610           <---------PCF2                                                -     <---------At4g35610             ------>NtERF2--------->MYB46(3)                     --------->ATHB12 ----------->HVH21 --------->HSFB2a(2)<---------ATERF1(1)                                <---------ICU4 ------>ALFIN1<---------DAG2       <---------ANAC58           <---------ICU4            <---------YAB1 xxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------ANAC58           --------->YAB1            --------->ICU4 xxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxx>smallRNA(le3)                      <---------YAB1-- xxxxxxxxxxxxxxx>smallRNA(fl3)  <-------PIF5   <---------ALFIN1                      --------------->AGL15 xxxxxxxxxxxxx>smallRNA(le3)    ------->PIF5  --------->ZAT14<---------ATHB12        <---------------AGL15 xxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->WOX13(1)    <----------DOF2  ---   gtgttgacgctgcttacttttgcagaactcacctcgtgcgggcctccctacacccatcccccaatcatccctagttcccaaaactttctgattattgcaa  22607000                               --------->ICU4                   <---------GLK1(2)                   <---------ARR14(3)                   --------->ARR11(3)                                                               -         ------->TEIL          <---------MYB52(1)    <---------ICU4                            <-----  --------->AHL20(2)       ------>NtERF2          --------->YAB1        ------------>CBF  --------->GLK1(1) ---------->GT1    <---------ARR14(2)       <---------TOE1(3)          --------->ANAC58  --------->ARR11(3) ------->DAG2      <---------ARR11(3)       <---------TOE2(3)          --------->ANAC58<---------TOE2(3) ------->DOF2      --------->ARR14(3)   <----------DOF2    <----------DOF2--------->WOX13(1) <-------   aaaagtaaatgaattttcgaagattttgaggccattagtgggatttagggtttcataatcgcattttgggattaagcaatctgtgatttgagatttcgat  22607100                        <-------TEIL                       --------->ARR14(1)                       --------->CCA1(2)                      <---------ARR14(2)                      <---------GLK1(2)                      --------->ARR11(1)                      --------->ARR14(2)              <------------CBF                        --------->ANAC58             --------->ATHB12                         --------->ANAC58            <---------AHL20(2)            <---------ANAC46           <----------DOF2                <---------ANAC58   <----------DOF2   <---------HSFB2a(1)  <---------ANAC58 ------>TEIL--------->AHL20(2)         <---------ARR14(2)                   <----------DOF2 -------CBF<---------WOX13(1) <------------CBF<---------ZAT6         <------------CBF --YAB1 ------>ZmHOX2a(1)   <----------DOF2  >>>>>>>>>TAC1      ------>ZmHOX2a(1)             -------   tgcatctttcctgatttattgaaagattcgcttattgtgaggtttcgagtgttagcaagtctcgtccttcaaattggtcttttcttaagaaaaaacacat  22607200                                                                         --------->ANAC46                                                                         --------->ANAC55(1)                                                                         --------->ANAC58        <---                                                                         --------->ANAC58        <---         ------------>CBF                            <---------TOE2(3)  <---------LBD16      <-------        --------->TOE2(3)               --------->HSFB2a(2)           <-------TEIL        <---------TOE2(2)  <-----------ARR10                     <---------HSFB2a(2)           <---------ZAT14     <---------TOE1(2) <---------CCA1(2)                     <---------TOE1(1)              --------->ZAT14    --------->LBD16 -->ANAC46                  ------------>CBF         <---------TOE1(3)--------->ZAT18   <---------TOE1(1)   cgcttatcttcgtcaatttctcaacgattttgcaatatagtccgagaagaatgttaagcttgaatcaagaagtacacggaccaaaaacttccgaggttta  22607300  Previous    Next  AGI:  At1g61275.1    Description:  U12; snRNA. gi|22293600|emb|AJ505704.1|ATH505704 Arabidopsis thaliana U12 snRNA, partial Range:  from: 22606786    to: 22606960    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g61280.1    Description:  Identical to Probable phosphatidylinositol N-acetylglucosaminyltransferase subunit P [Arabidopsis Thaliana] (GB:O64792); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G39445.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44579.1); contains InterPro domain PIG-P (InterPro:IPR013717); contains InterPro domain Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (InterPro:IPR016542) Range:  from: 22607251    to: 22607746    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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