Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        <---------AHL20(2)       <-----------GT1           <---------TOE2(3)              <---------AHL20(2)             <---------AHL20(2)           <---------TOE1(3)     ---------->DOF2                         --------->AHL20(2)    ------          ---------->DOF2      <---------HSFB2a(2)                      --------->AHL20(2)     ------ ---->GT1<---------AHL20(2)    --------->HSFB2a(2)               <-----------GT1  <---------DAG2   gaaaacaaaatttaaagtttttgttttatttttctaaaagttatttttttttcaagcttgagcattttttcaaaattaatatcaatttttgtataaaacg  22589200                                                           ----------------->AGL1                                                         <---------WRKY18(1)                                                        --------->WRKY38(1)                 ----------->GT1                        --------->WRKY12       <---------SPL7                                --------->ATHB12                               -      <---------ANAC58                              =======================HOX2a_HOX2a              <      <---------ANAC46 <----------DOF2              <------ZmHOX2a(2)                               -      <---------ANAC55(1)                           <---------YAB1  <------ZmHOX2a(1)   <---------TOE1(2)      <---------ANAC58 <---------DAG2              --------->ARR11(3)                  ------>ZmHOX2a(1) --->ANAC58    <---------ANAC46                    <---------ARR11(3)              <-----------GT1  < --->ANAC58 ----------->HVH21             --------->At4g35610---------->DOF2    --------->AHL20(2)---   aaattgtgccgtatgtgatgggttacttttcaaatgttcttagaagcagacaagatcattgaccaaaggaggacaatttcaattttttcctatgtgtgtg  22589300                                    <---------At4g35610     <---------ICU4                 <-------GAMYB                                             -------     --------->ATHB12 --------->AHL20(2)                                                      <------    --------->ICU4    <---------AHL20(2)                           <---------AHL20(2)    --------->YAB1 -------->ZAT18       --------->ATHB12                             --------->AHL20(2)    <---------ICU4 ---------ZAT18       --------->ATHB51<---------MYB46(3)          --------->AHL20(2)    --------->ICU4 -------->ZAT14      --------->AHL20(2)                  ----------->GT1             <---------YAB1 ---------ZAT14      <---------AHL20(1)                 --------->DAG2             ----------->GT1 ------------>AtSPL8 <---------AHL20(2)               ---------->DOF2              --------->YAB1   tgtgtactcattagaaaattcaaattatttgaaacttcagttgttgaataactaaaaaaaggctaatatttaatttgtcttacaatggtgataatgacat  22589400                                              ---------->DOF2                <---------AHL20(2)                                            <---------AHL20(2)               --------->AHL20(2)                                         --------->AHL20(1)                  <---------AHL20(1)                                         --------->AHL20(2)                  --------->AHL20(1)                                         <---------AHL20(1)                 --------->AHL20(2)                               <---------AHL20(2)                         --------->YAB1        ------->TEIL          <---------AHL20(1)                <------ZmHOX2a(1)     --------->ICU4           --------->AHL20(2)              <---------TOE2(3)                 ----- -->bZIP60(1)                 <---------AHL20(2)     ---------->DOF2    <---------TOE2(3)       ----- ---bZIP60(1)       <-----------GT1----------->GT1----------->GT1  <------ZmHOX2a(1)<---------At4g35610   caatgtaatgaatctacaaattttacaactaataaaattgaaatattttaaagtgtaaagtactaaggaggattaagaataaattcagataagataaatg  22589500                                <-----------GT1                            -------->ATHB1                            <--------HAHB4                            --------->ATHB51                            --------->AHL20(2)                                                    <--         ---------->DOF2    <---------AHL20(2)                                                    <--    ------------>CBF       <---------ATHB51     <----------DOF2                  <-------TEIL     <-- --------->ICU4        ------------>CBF      --------->ANAC58      <---------ANAC58       --------->ATHB12 ---->YAB1        ---------->DOF2     ---------->DOF2              <---------ANAC58 <---------At4g35610 ------>GT1----------->GT1 --------->ICU4    --------->ANAC58   *TSS           <---------SPL7    <---   gtaattagcaatatagcaaaaaaagaacaattatttactaaaaagacacgcttttgtgtcttcatataagcttgtcttcaacgttcggctaatccttggt  22589600         ------>ZmHOX2a(2)        <------ZmHOX2a(2)       <---------ARR14(3)       --------->ARR11(3)                                                              <-----------GT1       <---------ARR11(3)                                                           <---------ICU4       --------->ARR14(3)                                                           --------->AHL20(2)     ----------->ARR10                           --------->YAB1                     <---------AHL20(2) -------ANAC46                                <---------At4g35610     ----------->RAV1(2) -------ANAC58                             <<<<<<<<<TBF1   <---------DAG2       <---------AHL20(2) -------ANAC58                    ---------->ID1<---------YAB1        --------->At4g35610 ------DEAR3(1)         ---------->DOF2 <<<<<<<<<TBF1      <----------DOF2    <----------DOF2   ccgtgctaagatcttagatcgatttctaaagtcttcgtcttcttcttcttctgataactagctttttcaatcttctgaagctttaattttttcataccca  22589700                  --------->ARR14(2)                  <---------ARR14(2)>>>>>>>>>TBF1              =========================HOX2a_HOX2a              ===============HOX2a_HOX2a              ------>ZmHOX2a(2) <------ZmHOX2a(1)           <---------HSFC1(2)          <---------YAB1      <---------TOE2(3)             <---------At4g35610       <---------MYB52(1) --------->At4g35610               --------->HSFC1(2)     <---------ICU4       <---------At4g35610    <----------DOF2     --------->YAB1   <----------DOF2            ------>ZmHOX2a(1)    <---------DAG2----------->GT1    <---------ATHB12  ------>ZmHOX2a(1)     --------->WOX13(1)        <----------DOF2              <-   tggctaatcgttatgatccaaatcctttcgctgaggaagaagaagtcaatcctttcgctgtaagcttcttgacttttcgattcaactcgtaaaaactaga  22589800                                  <---------WOX13(1)                                  <--------P     <----------DOF2             <-------GAMYB    ------>ZmHOX2a(2)           <---------MYB46(3)                                               <XXX  <---------ARR11(3)           <---------YAB1            --------->ATHB12                  --------->ATHB12  --------->ARR11(3)           <---------TOE2(3)  ----------->GT1                      <---------MYB46(3) --------WOX13(1)      <-----------GT1        ------->TEIL                          <-----------RAV1(1)   gattgatctttctccgaattgggtttttcaattttggttgattcgttgaatcttgttaatctttgggttttacttagggttttattttgttgttgatttg  22589900                                                               ----------->GT1     --------->DAG2          ----------->GT1                             <---------YAB1              ---------->DOF2        <---------ANAC58                            <---------ICU4           <--------P        <---------ANAC58                           <---------ATHB51         <-------GAMYB     <------        <---------ANAC46             ---------->DOF2--------->YAB1         <---------ANAC46   <------ XXXXXXXXXXXXXXXXXMIR841B       ----------->GT1    --------->ICU4          ----------->GT1   --------   atttctactggcttgtaacttagaaattgaaaatgggtttaaaggaattggaaattatgagagatttgtaattcatggggttgataaagtttctaccttt  22590000 --------->ZAT18                                                                                   <- ----DOF2                                                                                          -- ---DAG2                         <-----------GT1------->TEIL                              --------->ATHB12 ->TOE2(3)                <----------DOF2    <---------YAB1                        --------->TOE2(3)<   atgttcactaaaacttgggtttgtgatgcttttatctactatttgtcatgaatcttgaagacgtttctcactgaattttgttttttcttaaatgatttgt  22590100  Previous    Next  AGI:  At1g61250.1    Description:  SC3 (SECRETORY CARRIER 3); transmembrane transporter. Identical to Secretory carrier-associated membrane protein 3 (SCAMP3) [Arabidopsis Thaliana] (GB:Q9M5P2;GB:O22722); similar to secretory carrier membrane protein (SCAMP) family protein [Arabidopsis thaliana] (TAIR:AT1G11180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24113.1); contains InterPro domain SCAMP; (InterPro:IPR007273) Range:  from: 22589564    to: 22592570    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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