Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         <---------YAB1                      <---------AHL20(1)                      --------->AHL20(2)                                                        -----                      <---------AHL20(2)                                                        -----                    <---------YAB1                                                         <---------YAB1                  <--------HAHB4                                                         <---------ICU4                  --------->YAB1                                                         --------->YAB1                  <---------ICU4                                                        --------->ICU4                 <---------YAB1                                  <---------AHL20(2)   --------->YAB1               --------->YAB1                                    --------->AHL20(2)   <---------ICU4      ----------->GT1--------->YAB1                             <---------AHL20(2) --------->YAB1 ---TOE2(3)--------->AHL20(2)        --------->AHL20(2)   --------->YAB1------->TEIL<---------AHL20(2)   atttgagggagtataaattatcattataattcaacaaaattaaaactgaattttgcgaaaacataatttatatgaaactcgagtataaaaatgatgactc  22549500                                                                                       --------->YAB1                                                                                   ------>ZmHOX2a(2)                                                               <---------AHL20(1) <------ZmHOX2a(2)                        --------->YAB1                         <---------AHL20(2)--------->ARR11(3)                  --------->ANAC58                     --------->ARR11(3)        <---------ARR11(3)                  --------->ANAC58                     <---------ARR11(3)        --------->AGP1     <------ZmHOX2a(2) <---------ATHB12             --------->AHL20(2)          --------->RVE1(1)  <- ---->ANAC58     --------->DAG2            ---------->DOF2     --------->AHL20(2)<---------AGP1    <- ---->ANAC58    ---------->DOF2        <---------ZAT6 <---------CCA1(2)      ---------->DOF2      <--   gaaatggatcaaatagaataaagcaatcgtaatgtcgaatagtggaaaagagatttatatcttattttattttgtctgaaaaagatctatcttcacctat  22549600                               <---------AHL20(2)                                             <------                              --------->AHL20(1)                                             <-------                              --------->AHL20(2)                                          <---------GLK1(2)                     --------->ANAC58                                                     --------->ARR11(3)               --------->AHL20(1)                                             --------->ARR11(3)               <---------AHL20(1)                                             <---------ARR11(3)               --------->AHL20(2)                                  <----------DOF2        <---------ARR14(3)          --------->AHL20(2)  <---------AHL20(2)                  <---------DAG2------>ZmHOX2a(2)        --------->TOE2(3)     <---------AHL20(1)                <---------ARR11(3)------>ZmHOX2a(1)        <----------DOF2    --------->YAB1                       --------->ARR11(3)<----------DOF2 --------AHL20(2)    --------->ANAC58                       ---------->DOF2 <---------YAB1--------->ARR14(3) --------YAB1 <---------AHL20(2)                    <---------AHL20(2)    --------->YAB1  <---------ARR11(3) -------AHL20(2)  <---------AHL20(2)               --------->AHL20(2)     <---------ICU4  --------->ARR14(2)   ttttattgaactttaaatattttaagcaaaaataaaattgattcaatttgatataaaatgagcaaagaccttttgatcatgatcctttacaagattttca  22549700                                                                                                  <--                                                                                                 ----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                               ------                                                                                               <-----                                                                                          --------->YAB1                                                                                  <---------AHL20(2)                                        --------->GLK1(2)                        <---------AHL20(1)            <---------YAB1       --------->MYB46(3)                              --------->ARR11(3)          <--------HAHB4         <------------MYB.PH3(2)                         --------->AHL20(2)          --------->YAB1   --------->GLK1(2)                                     <---------ARR11(3)     <----------DOF2       --------->ARR11(3)                    --------->AHL20(2)   <---------AHL20(2)     <---------DAG2        <---------ARR11(3)             ----------->GT1        --------->AHL20(1) ---YAB1  <---------ICU4  --------->RVE1(1)         ---------->DOF2        --------->TOE2(3)  <------ ----GT1 <---------YAB1 --------->AHL20(2)   ---------->DOF2   --------->AHL20(2)<---------AHL20(2) -   tttcatgctttatcattacagaaaaaaaaaatctaacaaactaatctgaaagctaaaagattgaaaataatatagtttcttaatatattttatcaaaatc  22549800     <---------ARR11(3)     --------->ARR11(3) -------YAB1 ----->TOE2(3) -----ICU4                                   <------ZmHOX2a(1) ---->YAB1                                 <---------TOE2(3) ---->ATHB12                               --------->ANAC46 --->ICU4----------->GT1              <---------ARR11(3) ----ATHB12                           --------->ARR11(3) ---ARR11(3)                          <-----------ARR10                   <---------MYB52(1)   *TSS -------->YAB1   ----------->GT1 <---------TOE2(3)             <-----------GT1      <---------ANAC46-   attaatagatattgtgaaatagataatagaaaattgagaatatctaaggaacttacaaattgatattacttcttccattagtcattgtggagaatgaaga  22549900                                                                                 --------->ATHB12                                                                              <------------CBF                                                                --------------->AGL15                                                                <---------------AGL15                                                               ----------------->AGL2                                                   <----------DOF2           --------->ATHB12                                                 ------->TEIL  ----------------->AGL1                                             <---------------AtSPL8         <---------YAB1                                             <---------------AtSPL3        <---------ARR11(3)      --                                             --------------->AtSPL8       <---------GLK1(1)       ---                          --------->DAG2   <---------ATHB12    ----------------->AG<---------WOX13(1)                    --------->ARR11(3)   ------>MYB83          --------------->AGL15          -------                    <---------ARR11(3)----------------->AG    <-----------------AGL1          -------    --------->AHL20(2)   ---------->DOF2 ------>MYB46(1)  <-----------GT1 --------->GLK1(1) <-------- -------->AHL20(2)------->TEIL        ==========================================MADS_MADS   ---------   aataaaaaaaatgggaaatgaagctcttaaagtgagtctaaccaaatgatgtacttttattaactcccaaaatgggatatcattgatttatgttctataa  22550000                                     --------->ATHB12                                    <---------AHL20(2)                                   <---------WOX13(1)                                 -------->HAHB4                                 --------->ATHB51       <-----------GT1           --------->ATHB12  <---------AHL20(2)             <--------ATHB1                               <---------At4g35610  --------->AHL20(2)             <---------ICU4                               --------->At4g35610 ------->AHL20(2)               <---------ATHB51              <---------AHL20(2)       <---------ATHB12 ------>AHL20(2)                <---------YAB1               --------->AHL20(2)  --------->ANAC58 ---->TBP----------->RAV1(2)    --------->ICU4               <---------AHL20(2)  --------->ANAC58 -->AHL20(2)                  --------->YAB1          <------NtERF2           <------NtERF2 -HSFB2a(2)                  <---------AHL20(2)      ------>NtERF2          --------->ZAT18        -- >HSFB2a(2)    <-------TEIL --------->AHL20(2)   --------->ANAC46           <---------ZAT18 ---------   ataaaaaattaacctgattcatttttcttatataataattgattaagacatacgctggcaaaattttttttttttatgtccgctcgcaaatcaaaaaaat  22550100                          --------->AHL20(2)                          <---------AHL20(2)                          <---------AHL20(1)                          --------->AHL20(1)                       --------->YAB1                      <---------YAB1                     <---------AHL20(2)                     --------->AHL20(1)                     --------->AHL20(2)                                    --------->ANAC58                    <---------ICU4                                         --------->ANAC46                    --------->YAB1                                      --------->ARR14(2)                   <---------YAB1                                       <---------ARR14(2)                --------->AHL20(2)                               <---------ARR11(3)                <---------AHL20(2)                              --------->CCA1(1)                <---------YAB1                               <---------AHL20(2)               <---------AHL20(2)                  <---------ICU4--------->ARR11(3) --------->ZAT6          --------->AHL20(2)                    --------->YAB1  --------->RVE1(1)  <---------At5g28300          <---------AHL20(2)                <----------DOF2  <---------ICU4--------->ANAC58          --------->AHL20(1)             <---------AHL20(2) <---------ATHB12<---------MYB59 --------->GT1 --------->AHL20(2)        <-----------GT1    --------->AHL20(2)    <-----------GT1 >AHL20(2)<---------AHL20(1)      <----------DOF2  --------->ATHB51    <----------TaMYB80 <---------ANAC46   atggaaatacaataaattttaattataataaattagcttttattttcttttcataatttctaataaatatctcatatacccaatttacagtatcgtattt  22550200                                                                    <---------AHL20(2)                                                                    --------->AHL20(2)                                                                  --------->AHL20(2)                                                                  <---------AHL20(2)                                                                <---------AHL20(2)                                                                --------->AHL20(2)                                      --------->GLK1(2)       <---------AHL20(2)                                      --------->ARR11(3)      --------->AHL20(2)                                      <-----------ARR10     --------->AHL20(2)                                      <---------ARR11(3)  <---------AHL20(2)    <---------AHL20(2)                                  --------->YAB1          --------->AHL20(2)  --------->AHL20(2)                               <---------ICU4           <---------AHL20(2)  <---------AHL20(2)                              --------->ICU4            --------->AHL20(2)  --------->AHL20(2)                            --------->YAB1            --------->AHL20(2)  --------->AHL20(2)                            <--------HAHB4            <---------AHL20(2)  <---------AHL20(2)                            <---------ICU4          --------->AHL20(2)  <---------AHL20(2)                   <---------YAB1<---------YAB1    <---------ARR11(3)   --------->AHL20(2)              ----------->GT1 <---------YAB1       --------->ARR11(3) --------->AHL20(2)   <---------AHL20(2)       -------->ATHB1         <---------AHL20(1) <---------AHL20(2)  --------->AHL20(2)       <---------ATHB12  --------->YAB1 <---------AHL20(2)<---------AHL20(2)   --   tgtattaaataagtttgagttaaaattgaatcattatgaaaatctaattagaatatatatatatatatatatatatatatatatatatgtgtgtgtgtgt  22550300                                                                                                   <-                                                                                             <-------                                                                                             <-------                                                                                            <--------                                                                                            ---------                      <---------YAB1                                                       --------->YAB1                      <---------AHL20(2)                                                  <---------YAB1                     --------->TOE2(3)                                                  <---------ICU4                     --------->YAB1                                                     -------->HAHB4               --------->ANAC55(2)                                                     --------->ICU4               <---------ANAC55(2)                                        --------->YAB1--------->YAB1          <---------ZAT6 <---------TOE2(3)                               <---------YAB1<---------ATHB51          <---------------AtSPL8  <-----------GT1                --------->At5g28300--------->AHL20(2) ----->TEIL   <-------TEIL     ----------->GT1                  ----------->GT1     <---------AHL20(2)   gtatgtatagtactggtacataatattaatgttttgtaacaatttcggtttctagtttctaaaatatggtaaattatcaaaatcgattaattatgatatt  22550400  Previous    Next  AGI:  At1g61160.1    Description:  contains InterPro domain Retrotransposon gag protein (InterPro:IPR005162) Range:  from: 22548533    to: 22549895    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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