Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           >>>>>>>>>TBF1                                                                     <------ZmHOX2a(1)                                                             <---------------AGL15 --->YAB1                                                    --------------->AGL15 ---YAB1          --------->YAB1                            ----------------->AG ----GT1         <---------YAB1                             ----------------->AGL1              ----- >YAB1  <---------ATHB12      ---------->DOF2--------->TOE2(3) ---------->DOF2----------->GT1  <-----   ttctattcaaatcaagactatcattttctcttcaaagtttcaatttttcttaatgggtattagccaaaagaggaagaagaaggaaacatactgagtaatc  22481000                                                                                                    -                                                                                                    -                                                                 <---------TOE2(2)                  -                                                              --------->ANAC58              ---------                                                        --------->LBD16                    --------->ANAC46                                                    --------->AtLEC2    ------->TEIL    --------->ZAT14                                                ------>NtERF2 --------->ANAC46          <---------ZAT14                                               --------->RAP2.3(3) <------ZmHOX2a(1)    --------->ZAT18  ==========================HOX2a_HOX2a      ------->GAMYB    --------->ANAC58          <---------ZAT18  <------ZmHOX2a(1)    --------->WOX13(1)   --------->ANAC58 --------->ZAT18      --------->YAB1   -- ---->YAB1           <------ZmHOX2a(2)      --------->ANAC46 --------->SPL7      <<<<<<<<<ARR2    --- ----ATHB12        <------ZmHOX2a(1)        --------->ANAC58 <---------ZAT14     <---------ATHB12 ---   aagaggacatcaatggaagaaggatcaatctcatcgaagtaaggcaacgcagccatgcccgagtacgcaggatgaatcccacaatcaaactgcacaacac  22481100                                                                                     <---------YAB1                                                                                    <---------ARR11(3)                                                                                    <---------AHL20(1)          --------->YAB1                                                            --------->ARR11(3) -------->TOE2(3)                                              --------->MYB52(1)   --------->AHL20(1) ------>GAMYB               ----------->RAV1(1)          <----------ID1          <---------GLK1(2) -------->YAB1             --------->MYB46(3)       --------->ATHB12      ----------->HVH21 -->RAV1(1)              ----------->RAV1(1)     <---------AtLEC2       <---------At4g35610 ------->MYB46(3)  --------->ANAC58              <---------ANAC58       --------->At4g35610 ------>ANAC58     --------->ANAC58              <---------ANAC58       --------->ZAT2              < ------>ANAC58--------->ANAC46      --------->YAB1<---------WOX13(1)   --------->GLK1(2)     <-------   aaccaaaatcaactataagacatgccccaacaacaaaatcaaaacacatttgcttgattagaacaaaacggagaagctgaccagaatatttttgcctcgg  22481200                                   --------->LBD16                                   ------>NtERF2                                   <---------ATERF1(1)                           <---------ZAT14                           --------->ZAT14                         --------->ANAC46                         --------->bZIP60(2)                         --------->TGA1a     ------->GAMYB                         --------->O2      >>>>>>>>>MYB98                         ============================MYC_MYB                        ------>MYB46(1)   --------->MYB52(1)             --------->HSFB2a(2)                        ------>MYB83     ==============================HOX2a_HOX2a <--------P                       <---------ALFIN1  ------>ZmHOX2a(1)      ------>ZmHOX2a(2) <---------ANAC58    --------->AtLEC2  --------->MYB46(3) ----------->HVH21    --------->ARR11(3)  <---------ANAC58 ------ZmHOX2a(1) --------->MYB46(3)  ------>NtERF2           <---------ARR11(3) <---------MYB46(3) --LBD16       <------ZmHOX2a(1) <---------LBD16  --------->MYB52(1)     <---------HSFB2a(2)  <------   aaggacatgtaaacacaggaacgacccacttcacttccggctcctaacggagtaacgataagttgatctccatctcgcgaaattggttgctctcttcttt  22481300                                                                                                  ---                              <----------DOF2                                                     <--                          <---------ANAC58                                                        <--                          <---------ANAC46                                                        ---                --------->ANAC58                                                                 <---                --------->ANAC58  --------->HSFB2a(2)  >>>>>>>>>TBF1        <---------ZAT14     *TSS ----DOF2   >>>>>>>>>TBF1 <---------ANAC58  ------>ZmHOX2a(1)   ---------->DOF2          <---------MYB52(1)   tcagagaagtagaagaagaagccatgtttcgtctttctcgattttcctccaagagaagaagaaactcaaagaactgagtacagcaatttcagttagtgta  22481400                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               <xxxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             --------                                                                                             <xxxxxxx                                                                ----------->RAV1(2)          <xxxxxxx                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                          --------->ANAC46                   <xxxxxxx                                                          --------->ANAC58                   <xxxxxxx                                                          --------->ANAC58                  <xxxxxxxx                                                         <xxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxx                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)        <xxxxxxxx                                                        <xxxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxx                                                     --------->PCF2 <---------ARR14(2)      <xxxxxxxx                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)              <xxxxxxxxx                                               <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <xxxxxxxxx                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxxxxxxxx                                           --------->ALFIN1<---------ALFIN1        --------->ANAC58            ---------->DOF2               <xxxxxxxxxxxxxxxxsmallRNA(s)------>ZmHOX2a(2)  <xxxxxxxxxxx        --------->TOE2(3)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->ANAC58<-        --------->TOE1(3)               <xxxxxxxxxxxxxxxxsmallRNA(s)--------->ARR14(2)  <xxxxxxxxxxxx ------>ARR11(3)                       <---------ZAT14 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxx -------ARR14(2)                      --------->AtMYB61--------->TOE1(2)   <-----------HVH21<xxxxxxxx -------ARR11(3)                      <---------ALFIN1--------->DEAR3(2)--------->LBD16 <xxxxxxxxxxxx ------>ARR14(2)                --------->MYB52(1)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxx ------CCA1(2)    <----------DOF2     ----------->RAV1(1)<xxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxx   tatcttcaaaccctaaaagcctttaaaaaaaaaaaaacgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgc  22481500       <---------WRKY38(1)      --------->WRKY18(1)     --------->At5g28300    ----------->GT1 --->ZAT14 ----ZAT14 ----ZAT18 --->ZAT18 xxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxsmallRNA(s) xxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxsmallRNA(le3) ->ANAC46  *TSS    <------------CBF xxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxsmallRNA(l2)            <---------AHL20(2) xxxxxxxxxxxsmallRNA(fl3)           --------->AHL20(2) xxxxxxxxxxxsmallRNA(s2)            <-----------TBP xxxxxxxxxxxsmallRNA(le3)         <-----------TBP xxxxxxxxxxxsmallRNA(si3)      <---------AHL20(2) xxxxxxxxxxxsmallRNA(se3)      <---------AHL20(1) xxxxxxxxxxxsmallRNA(fl3)      --------->AHL20(1) xxxxxxxxxxxsmallRNA(si3)    <---------YAB1                                                   ------- xxxxxxxxxxxsmallRNA(se3)   --------->AHL20(2)                                                ------- ---------DOF2  ------------>CBF<---------YAB1                                              --------- xxxxxxxxxxxsmallRNA(si3)   --------->AHL20(1)                                              <-------- xxxxxxxxxxxsmallRNA(si3) --------->ARR11(3)                                           --------->ANAC58 xxxxxxxxxxxsmallRNA(se3) <---------ARR11(3)                                           --------->ANAC58 xxxxxxxxxxxsmallRNA(fl3) <---------AHL20(1)                 *TSS                     --------->WOX13(1) xxxxxxxxsmallRNA(fl3)    --------->ICU4   ---------->DOF2  ----------->GT1        <-----------HVH21- xxxxxxxxxxxsmallRNA(se3) --------->AHL20(1)         --------->AHL20(2)   ---------->ID1   <---------CCA1(2)   gctatgcggtcaatacatagcaattgaaaatattatatttatatagaaagtcatattatataccgaaaatacccttgtcttattttgtcactcaaatctg  22481600                                                              <---------LBD16                                                              --------->LBD16                                                             <---------ANAC46                                                             <---------LBD16                                                           <---------ZAT2                                                     <------NtERF2                       ------>NtERF2                           <------NtERF2            <-----------HVH21                    <---------ATERF1(1)                         <---------DEAR3(1)         <---------ATERF1(1)                 <---------DEAR3(1)                    <----------DOF2                --------->DEAR3(1)                  <---------ANAC58                  --------->HSFB2a(1)              <---------DEAR3(1)                  <---------ANAC58          --------->HSFB2a(1)                      <---------MYB46(3)                  <---------ANAC46          <---------HSFC1(2)   <---------YAB1 --------->RAP2.6(3)               --------->TGA1a      ----------->GT1   <---------LBD16       <---------At5g28300  ----------->GT1    <---------LBD16 -->TOE1(2)       <---------HSFC1(2)    <---------ZAT18    --------->ZAT2       <---------TGA1a -->TOE2(2)  <---------------------WRI1 --------->ZAT18   --------->ANAC58      --------->O2 >ARR14(2)--------->HSFC1(2)<---------DEAR3(1)--------->SPL7<---------LBD16     <---------O2 -ARR14(2)<---------HSFB2a(1)  --------->ICU4--------->MYB52(1)<------NtERF2  ------>NtERF2  <------NtERF2 -------->SPL7    --------->HSFC1(2)  <---------At4g35610 --------->ANAC58   --------->DEAR3(1)   cgaacgaagagaaaattcgaagctttctcggcgatgatggagcgaacttacggccgtcgcaagccggggatgttaaacgacgacgtctcgcgggcggaac  22481700                                                                                      <------ZmHOX2a(2)                                                                                      --------->CCA1(2)                                                                                     --------->AGP1                                                                                     --------->ARR14(2)                                   <---------At4g35610                               <---------ARR14(2)                     <---------HSFB2a(2)                                             <---------ARR11(3)                     --------->HSFB2a(2)                                    <---------YAB1      <----                 --------->At4g35610                                      -------->ATHB1       <-----                 <---------At4g35610                                --------->HSFB2a(2)    <---------DAG2      <---------ANAC58           <-----------RAV1(2)               <---------ANAC46  --------->ARR11(3)      <---------ANAC58--------->LBD16   <---------GLK1(1)--------->YAB1  --------->ICU4    <---------   <-----------GT1  <---------LBD16<-------GAMYB      --------->YAB1<---------HSFB2a(2) <---------ALFIN1   atatttttccgtcttcttcatctccagaactcgagccagttgatttctcaactcaagaatcatcttgtgtctggaattattcttcaagatccactttttc  22481800                                                       <---------MYB46(3)                                                <---------ANAC46                                             <---------ANAC46                                             --------->ALFIN1                                           --------->MYB55(2)    <---------ICU4                         <---------MYB46(3)    --------->ATHB12                      <---------AtMYB61   <---------YAB1                         --------->ALFIN1    <---------ARR14(2)   --------->ICU4                    --------->MYB52(1)<------MYB83 --------->YAB1                     --------->ARR14(2) <------MYB46(1) -----ANAC46                        <---------ARR14(2)<---------AtMYB61                           <-- ----LBD16                        --------->LBD16     --------->MYB59<----------DOF2           ------ -DOF2               <------ZmHOX2a(1)    <---------DEAR3(1)  --------->ARR14(2)          <---------DEAR3(1)   ggataatgatttttctgagaagaggaacaagagacccagaaacggtggtggagggtttggttcgaattcgactttgatggaggctcaagagttcggcgag  22481900  Previous    Next  AGI:  At1g61010.1    Description:  CPSF73-I; protein binding. similar to ATCPSF73-II (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73 KDA SUBUNIT-II), catalytic/ protein binding [Arabidopsis thaliana] (TAIR:AT2G01730.1); similar to hypothetical protein OsI_013856 [Oryza sativa (indica cultivar-group)] (GB:EAY92623.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47036.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71414.1); contains InterPro domain RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) Range:  from: 22478382    to: 22481396    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g61020.1    Description:  pre-tRNA. tRNA-Arg (anticodon: TCG) Range:  from: 22481438    to: 22481511    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g61030.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16922.1); contains domain PTHR22100 (PTHR22100); contains domain PTHR22100:SF9 (PTHR22100:SF9) Range:  from: 22481561    to: 22486045    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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