Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       --------->ANAC55(2)                                                                                    <---------TOE2(3)                                                                                   <-----------GT1<--                                                                               --------->AHL20(2)----                                                                               -------->ATHB1    ----                                                                               <--------HAHB4   -----                                                                               <---------AHL20(2)<---                                                                               --------->ATHB51 <----                      <---------AtMYB61                                       <---------ATHB51 <-----                 --------->ALFIN1                                             <---------ATHB12 ------               <---------TGA1a          <-----------GT1                       --------->ICU4 --------             <---------ZAT14      --------->ANAC55(2)<------MYB83         <-------TEIL      ---------             --------->ZAT14      <---------ANAC55(2)<------MYB46(1)   ----------->GT1--------->TOE2(3)        --------->WRKY38(1)    --------->GLK1(2)    --------->MYB59   <---------TOE2(3)     <-------- ->DOF2 --------->WRKY12 --------->ALFIN1       --------->ATHB12      <---------TOE1(3)     <--------   ccattagaagttgactgaagtgtgaaggtggagattatgtattcacttgttgatttggtatacattctatgtaaggttcaattatttacgttatataatt  22447800    ----------->GT1 -------YAB1 ----->AHL20(2) ----->AHL20(1) ---->YAB1 ------AHL20(2)                                    --------->ARR11(1) -----ICU4                                       <-------TEIL                    --------->CCA1(2) ----YAB1             ----------->GT1           <--------P                      --------->ARR14(2) --->ICU4        --------->ATHB12           <-----------RAV1(2)                 <---------ARR11(3) ->YAB1        --------->At5g28300         <---------MYB52(1)             ------>NtERF2 >AHL20(2)   --------->ZAT6               <-----------HVH21              --------->LBD16           <- -YAB1      <---------At5g28300         --------->MYB59        ----------->GT1----------->ARR10    -- -AHL20(2) <-----------GT1         ----------->ARR10--------->ARR14(1) <---------LBD16----------->GT1   ataatggagtaatttacagtaattgggttaaaatggtttgattcggtcaggttgatacggtttggaagttaaacccggcctagatatgatgttacaacca  22447900                                                                                             --------                                                                                   --------->ANAC58                                                                                   --------->ANAC58                                                                             <-----------HVH21     <-           <---------YAB1                                                 --------->At4g35610--------         --------->YAB1           ----------->GT1                         <---------ZAT2     <-------      <----------DOF2      --------->MYB52(1)                             --------->ZAT2     --------   <---------ARR11(3)     --------->TOE1(2)         --------->ANAC46      <---------At4g35610-------- --------ZAT18           <---------MYB52(2)  --------->ANAC46           --------->ZAT18      -------- ------->ZAT14           --------->MYB46(3) <---------------------WRI1<-----------HVH21      --------   gtccacatcttttatgattttagtggaacaaacgaagagttatttagacgatacaaacaaggtccgaataagtgtgagctgtcccaagtaagaccacgta  22448000     --------->TOE2(3)    --------->At4g35610 ->ANAC58 --------ICU4                --------->ALFIN1 ->bZIP60(2)              --------->DAG2                                                    --------- --ANAC55(2)             ---------->DOF2                   --------->YAB1               ============= ->ANAC55(2)       <---------ZAT18                  --------->ANAC58                    <------ZmHOX2a(2) ->ANAC58         <---------ZAT6            --------->YAB1<---------ATHB12     --------->GLK1(2) ->ANAC55(1)  <---------ARR11(3)      --------->YAB1--------->ANAC46 ================================ ->ANAC46     --------->ARR11(3)<-----------HVH21   --------->ANAC58 ---------->DOF2   --------->ARR14(2)   atactcacctcaacaagatagtgttcttaaagtgtgtcaaacacaatcacacacacacaaatcataaaacacaaagacgataatccatcgatccacagaa  22448100           <--------P       ------->MYC3       <-------MYC3       ------->MYC2       ------->PIF5       <-------PIF5       <-------MYC2       <-------MYC4       ------->MYC4      --------->PIF3(3)      <---------PIF3(3)      ==============MYC_MYB      --------->bZIP60(2)      --------->TGA1a      ===================================bZIP_DOF      <---------O2      --------->O2      <---------ANAC46      <---------TGA1a                                                  --------->ANAC58      ===================================bZIP_DOF                      --------->ANAC46     ------>NtERF2                <---------ARR11(3)                   --------->ANAC58    <---------ALFIN1              --------->ARR11(3)               --------->HSFB2a(2)  ------>NtERF2    <---------ARR14(2)                      ------>NtERF2  <-----------------PIF3(1)    --------->DAG2             --------->bZIP60(2)                   <---- --------->ANAC46  <---------GLK1(2)                      --------->ANAC58                      <---- --------->ANAC58  --------->ARR14(2)                     --------->ANAC46              --------->ARR11(3) --------->ANAC58 <------ZmHOX2a(1)       <----------DOF2 --------->ANAC58           *TSS --------->TOE2(3) >ANAC46--------->ALFIN1      ---------->DOF2 <-----------GT1      <---------HSFB2a(2)  <---------ARR11(3) ========================HOX2a_HOX2a     <---------DAG2 <---------ALFIN1          ------>ZmHOX2a(1) ===============bZIP_DOF--------->ZAT6<-----------GT1  <---------REM1(2)         --------->TOE2(3)   tagacgccacgtggtagataggattctcactaaaaagttctcaccttttaatctttctccacgccatttccacaagccataatcctcaaaaatctcaact  22448200                                                                                           --------->WOX13(1)                                                                                      <---------At4g35610                                                                                      --------->At4g35610                                                                                      <---------ZAT2                                      <---------ZAT14                                 --------->ZAT2                                      --------->ZAT14                         <---------SPL7                                      <---------ZAT18        <---------ARR14(2)     <---------ALFIN1                                  <---------ALFIN1  --------->DEAR3(1)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              <---------ANAC58   ------->GAMYB              <---------MYB52(1) -----DAG2             --------->AHL20(2)    ---------->DOF2 --------->ARR14(2)    --------->LBD16 ------DOF2 --------->ANAC46  <---------ANAC58   --------->ANAC46          <-----------HVH21 <-------   ttatctcccaaaacacaaaacaaaaaaaaatggcttccactgctctctcaagcgccatcgtcggaacttcattcatccgtcgttccccagctccaatcag  22448300                                                                      <-----------HVH21                                                                     --------->ALFIN1                                                                   --------->TGA1a                       --------->ANAC46                            <---------TGA1a                       --------->ANAC58                     --------->ALFIN1                       --------->ANAC58                    <-------PIF5                      ------->GAMYB                        ------->PIF5----------->HVH21                   ----------->RAV1(1)                --------->DEAR3(1)                 --------->MYB46(3)                  <------NtERF2 <---------O2 <--------------------   <---------MYB52(1)<---------ALFIN1         <---------ATHB12     <---------ANAC58 --ATHB12       --------->At4g35610      <-----------------AGL1    <---------ANAC58            ------   tctccgttcccttccatcagccaacacacaatccctcttcggtctcaaatcaggcaccgctcgtggtggacgtgtcacagccatggctacatacaaggtc  22448400                                                                        --------->ZAT2                                            <---------O2                --------->At4g35610                                            --------->O2                <---------ZAT2                                            <---------ANAC46            <---------At4g35610                                   ----------->HVH21                 <------ZmHOX2a(1)                                   ----------->TGA1                <---------TOE2(3)                                 --------->ALFIN1              <---------ZAT2                               <---------ANAC46                --------->At4g35610                    <---------At4g35610   ------>NtERF2        <---------At4g35610                    --------->At4g35610  --------->DEAR3(1)    --------->ZAT2                      <- <-------TEIL     xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------At4g35610                    <- -WRI1 --------->ANAC46        <---------ANAC58            <-----------RAV1(1)                     <- --->WRKY18(1)--------->DAG2   <---------ANAC58    xxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <-----------GT1<   aagttcatcacaccagaaggtgagctagaggttgagtgtgacgacgacgtctacgttcttgatgctgctgaggaagctggaatcgatttgccttactctt  22448500         <---------ANAC58         <---------ANAC58     --------->DAG2  --------->ZAT2             ---------->DOF2  <---------ZAT2       <---------ZAT2         <-----------RAV1(1)                     <---------GLK1(2) --------->ALFIN1 <---------ZAT2             ------>ZmHOX2a(2)              --------->ICU4 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------ARR11(3)          <---------ANAC58  <------MYB83 --------ANAC58   --------->At4g35610      --------->ARR14(2)          <---------ANAC58<---------WOX13(1) --------ANAC46   <---------At4g35610      <---------AGP1              --------->TOE2(3) <------MYB46(1) --------ANAC58   --------->ZAT2    <---------ANAC46      ----------->HVH21 <---------YAB1 <---------REM1(1) ---------RAP2.6(3)   --------->ALFIN1     <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   <   gccgtgctggttcttgttcgagctgtgctggtaaagttgtgtctggatctgttgatcagtctgaccagagtttccttgatgatgaacagattggtgaagg  22448600                         ------>MYB46(1)                         ------>MYB83                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 <---------ANAC58                 <---------ANAC58                --------->At4g35610                <---------At4g35610             <---------At4g35610            <-----------RAV1(1)                                                             <--------        --------->TGA1a  -------->P                                               ------>MYB46(1)        =====================MYC_MYB             ----------->RAV1(1)              ------>MYB83        =====================MYC_MYB  <---------YAB1          --------->ARR11(3)<---------MYB111(1)        <---------TGA1a <---------ALFIN1 <---------------------WRI1             <---------MYB46(2) ---------MYB46(3)  -------->P      <-----------GT1 ---------->DOF2          <---------ALFIN1      --   gtttgttctcacttgtgctgcttaccctacctctgatgttaccattgaaacccacaaagaagaagacattgtttaagcctcacctactcaccagcttttg  22448700  Previous    Next  AGI:  At1g60950.1    Description:  FED A (FERREDOXIN 2); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding. Identical to Ferredoxin-1, chloroplast precursor (PETF1) [Arabidopsis Thaliana] (GB:P16972); similar to ATFD1 (FERREDOXIN 1), 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding [Arabidopsis thaliana] (TAIR:AT1G10960.1); similar to unknown [Picea sitchensis] (GB:ABK23878.1); contains InterPro domain 2Fe-2S ferredoxin, iron-sulphur binding site; (InterPro:IPR006058); contains InterPro domain Ferredoxin [2Fe-2S], plant; (InterPro:IPR010241); contains InterPro domain Beta-grasp fold, ferredoxin-type (InterPro:IPR01 Range:  from: 22448185    to: 22448826    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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