Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  <---------CCA1(1)                                                                <---------RVE1(1)                                                            <------NtERF2                                                           --------->LBD16                                                          --------->DEAR3(1)                                                          <---------ANAC46      <---------AHL20(2)                                 <---------LBD16                <----------DOF2      --------->ARR11(3)                               --------->ANAC46          <---------ANAC58      <---------AHL20(1)                        --------->TOE2(3)               <---------TOE2(3)      --------->AHL20(1)                     <---------ARR14(2)<---------ARR11(3)<---------ANAC58     --------->ICU4             ------>ZmHOX2a(2)   <---------REM1(2)          <-----------GT1 ----DOF2         --------->MYB46(3)         --------->ARR14(2)--------->ARR11(3)<---------ANAC46   ttttgtaatattttgtgtcaacaattgaatttgatccatggtgagagaaacctctaaacgccggagatatttgtgatgttttaacgtggtctttcatctt  22427200              --------->HSFB2a(2)              <---------HSFB2a(2)          <---------ANAC46                                                                        ---          --------->ANAC58                                                                        <--          --------->ANAC58                                             --------->DAG2          ------   <---------ANAC58                       --------->At4g35610         ---------->DOF2          <-----   <---------ANAC58           <----------DOF2---------->DOF2    <----------DOF2   ---------->DOF2----   caattgctagttacgcctagaaacatatgtgactttaaactatcagataaagacttataaaacacacttttaaaaagtcataaacaaagacatctaataa  22427300       <---------MYB52(1)    ----------->GT1      --------->TOE1(3)     <---------TOE2(3)      --------->TOE2(3)    <---------ICU4   -------->P             --------->ICU4                           <---------AHL20(2) ------>YAB1          --------->AHL20(1)                      <---------AHL20(2) -------ICU4          --------->AHL20(2)                   --------->AHL20(2) --->YAB1            --------->YAB1             --------->YAB1<---------AHL20(1) ----ICU4<---------ICU4 --------->YAB1         --------->ICU4 --------->AHL20(1) ----->ICU4     --------->ANAC46              <---------KAN4(2)--------->AHL20(2)   taatcaacccttaattacacaaaaaataataatgtaaaacaatattagaatgatcaatttttaaaatatttagtttttttttttttttggtgatagaaac  22427400                                                                                                  <--                                          --------->YAB1                                 <---------TOE1(3)                               --------->ANAC58                                          <---------TOE2(3)                        <---------At4g35610  --------->YAB1                             <---------At5g28300                      --------->DAG2    <---------TOE2(3)                      --------->ANAC58 <----                     ---------->DOF2    <---------ANAC55(2)                    --------->ANAC58<-----            ---------->DOF2    --------->ANAC58              <-----------------AGL1    <-----------GT1   taaaaatttagactataagccgataaagctgataagcccattaagtataatgagaccctagttttcaaatttggactagacaagcccatttacggttttg  22427500                                                                          --------->ICU4                                                                     --------->YAB1                                                                  --------->YAB1                                                                --------->GLK1(2)                                                                <---------ARR14(2)                                                                --------->ARR11(3)                               --------->YAB1                   --------->ARR14(2)                               <--------ATHB1                   <---------ARR11(3)         --------->AHL20(2) --------->YAB1               <---------HSFB2a(2)   --------->ZAT6         ------------>CBF               ------>ZmHOX2a(1)*TSS -------REM1(1)          <-----------GT1    <-----------GT1    <---------GLK1(2) -----ANAC46       ------------>CBF    <---------CCA1(2) --------->HSFB2a(2)  <---------AHL20(2)<---- ----AtMYB61    <---------ZAT6<---------ATHB51     <---------At4g35610  <---------ICU4  ------>ZmHOX2a(1)   gtgtaacaccaaaaaatactgttcaatttacaataatacccatatatcacttcatcttcctcgaagaatcttcataatttttaattcatcctccattaga  22427600                                                                                                  <--                                              ------>MYB83 <------ZmHOX2a(2)                   <-----                                --------->MYB52(1)        <---------ARR11(3)              ------->GAMYB  --------->STY1(1)      --------->YAB1       --------->MYB52(1)                       --------->MYB52(1)  <---------STY1(1)--------->ANAC46           ------>MYB46(1)     --------->ALFIN1  --------->ANAC58 -----GLK1(2)    --------->AtLEC2  --------->YAB1         --------->ARR11(3)        --------->ANAC58<   atccctagggttttcttccatacacaatcagactcaacgataagtaccaatcggagaagagatcacaagtggatgatgagttacgaaggcaacggagatg  22427700                                                   --------->ANAC58                                                   --------->ANAC58                                                --------->ZAT2                                                --------->At4g35610                                                <---------At4g35610          <---------ALFIN1                      <---------ZAT2 -------REM1(1)     --------->AtMYB61--------->ARR11(3)    <---------AtLEC2                       <-- ----AtMYB61--------->ANAC46         <---------ARR11(3)<----------DOF2                     <--------- ------NtERF2   ---------->DOF2     <---------CCA1(2) <---------DAG2                  <-----------GT1   gtgtcgctatctccaccgaaaaccacaacgagaactacatatctctagagagctcgccttttcatgaagactccaagtctcgagtatgttacactttctt  22427800                  --------->GLK1(2)           <---------ANAC58           <---------ANAC46           <---------ANAC58                                    <---------ICU4       <---------ANAC58                                        --------->ATHB51     --------->ARR14(2)                                       --------->ICU4               ----------     <---------ARR14(2)                                       <---------YAB1               <------MYB46(1)     --------->ARR11(3)                                     --------->YAB1                 <------MYB83     <---------ARR11(3)                                     <---------ICU4                -----------    <---------CCA1(2)          <---------TOE1(3)           --------->ICU4                 --------->MYB59  --------->ANAC55(2)          <---------TOE2(3)           <---------ATHB12        ----------->GT1 --------DOF2    <---------GLK1(2)       <---------ANAC46  <---------YAB1          --------->YAB1 -DOF2 <---------ANAC58    <----------DOF2            ----------->GT1     <---------ALFIN1<----------   ctttacatatcttgcgttcgattctgtagcttttaggtttctctcgtgaattagactggtaatcataatttgttctccacttgtattgtaatttggtaca  22427900           <---------ANAC58           <---------ANAC58         <---------YAB1                                                               <-------TEIL     <---------ARR14(2)                                                       <---------YAB1     --------->ARR14(2)                                                     --------->YAB1     <---------GLK1(2)                              <-----------GT1        <---------YAB1 <---------LBD16                                 --------->ARR14(2)      --------->YAB1 ->GT1--------->GLK1(2)       <---------YAB1     <---------ARR14(2)     <---------AHL20(2) ---->AtSPL8           <---------TOE2(3)        <------ZmHOX2a(1)    --------->AHL20(1)           <-- -----AtSPL8 <---------MYB46(3)        --------->ATHB12              <---------ARR11(3)   <---------TOE1(2)   attctcggattctgcttgttgaatttatgtttttgatagtttgatttgaaggattcactggatttagagtatatattatcatgttaagttcatatgttct  22428000                                                                              <---------HSFC1(2)                                                                              <---------HSFB2a(1)                                                                            <---------GLK1(2)                                                                            --------->ARR14(2)                                                                            <---------ARR14(2)                                                       <---------GLK1(2)   <------ZmHOX2a(1)                                                      ===================HOX2a_HOX2a                                                      <------ZmHOX2a(1)---------->DOF2         --------->LBD16                         ------>ZmHOX2a(1)------>ZmHOX2a(2)         <---------LBD16                         ========================HOX2a_HOX2a     --------->GLK1(2)                         <---------ANAC46   ================HOX2a_HOX2a    <---------GLK1(1)                          <---------ANAC58 <---------ARR11(3)              ----- --------DOF2                  <---------DAG2  <---------ANAC58 --------->ARR11(3)     --------->GLK1(2)   ctttagaaatctggggatagtatatgagagaagccttttgacatttgtttcctgcaggaatctcatgatcttaaaaaggattcttcgaaaatcagtgaga  22428100  Previous    Next  AGI:  At1g60900.1    Description:  U2 snRNP auxiliary factor large subunit, putative. similar to ATU2AF65A, RNA binding [Arabidopsis thaliana] (TAIR:AT4G36690.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22878.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain U2 snRNP auxilliary factor, large subunit, splicing factor; (InterPro:IPR006529) Range:  from: 22427574    to: 22431687    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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