Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    --------->AHL20(2)                                                                                  <---------ARR11(3)                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                             <------NtERF2     ------>NtERF2                                                           --------->LBD16    --------->DEAR3(1)                                               <---------ANAC58    ----------->HVH21                                     <---------ARR14(2)--------->ANAC58        <    <---------ETT(1)                                      --------->ARR14(2)--------->ANAC58        < ------AHL20(2)                                          --------->At4g35610--------->ANAC46   <----- --AHL20(2)      <-------GAMYB                        <---------At4g35610  <---------LBD16    <------ ->AHL20(2)     <---------ANAC46              ------>ZmHOX2a(1)      <---------ANAC58    --------->ZAT6   taatctccgaccaagactgcgttggcaaactatccgtcttcgacgctcctctgttcatcagataccatatttcttggcccgcaagaaattatctctaggg  22414800                                                                                  --------->ARR11(3)                                                                                  <---------ARR11(3)                <-----------HVH21                                            --------->AHL20(2)           --------->ZAT2                                                    <---------AHL20(2)           --------->At4g35610                                       <---------ZAT6<---------YAB1 ---------TOE2(3)                  ---------->DOF2           <-----------GT1 --------->AHL20(1) ---------TOE1(3)                --------->At5g28300--------->ARR14(2)      --------->AHL20(2)      - ----ZAT6  <---------ZAT2  ---------->DOF2          <---------ARR14(2)--------->At5g28300       ----- ---TOE1(3)<---------At4g35610<---------LBD16 <---------ARR14(2)     ----------->GT1           ------   ttagggttttcgcagatgggtcatggaataaatgcggtaatgcaagaggttttggatttgggtttacaatactgtaaaaaaaattatcttcgctccaaaa  22414900                                                         --------->AHL20(1)                                                         --------->AHL20(2)                                                         <---------AHL20(1)                                                         --------->ARR11(3)                                                         <---------ARR11(3)                                             --------->LBD16                                           <---------LBD16                                          <---------ALFIN1         <---------AHL20(2)              <---------REM1(2)         --------->AHL20(1)             ------>ZmHOX2a(1)<---------AHL20(2)         <---------AHL20(1)           <-----------------AGL1         --------->AHL20(2)           ----------------->AGL1      ------>MYB83                   <-----------GT1    --------->AHL20(2)      ------>MYB46(1)               <-----------GT1 --------->AHL20(2)                      --------- -------->ZAT18                 <---------DAG2    ----------->GT1                 ---------->DOF2 ---->DAG2--------->AHL20(2)    <----------DOF2 ---------->DOF2               ----------->RAV1(1) ---->DOF2<---------AHL20(2) <-----------GT1--------->ANAC46          --------->YAB1  ---------->DOF2   agtgaaccaaataaaattagatttgtttgttttacttttttcctccacgggaaagtaaatatattagttcattaagaacaccacaaaagaaaggaaaaga  22415000                                                       ----------->GT1                                          <---------ARR11(3)               <---------AHL20(2)                             <---------AHL20(2)  <------ZmHOX2a(1)----------->GT1        <---------GLK1(2)                 <---------AHL20(2)       --------->ARR11(3)   ---------->DOF2    --------->ARR11(3)      --------->TOE2(3)      --------->AHL20(2)<---------TOE2(3) --------->DAG2   <---------ARR11(3) ->DOF2<----------DOF2<-----------GT1    <---------RVE1(1) ---------->DOF2 --------->AHL20(2)<-------   gttctctacctttgtgtatttttttttctaattttttgctaagagattttaggaaaatagttaaagaaaggtaatattaaaaaacatctcagattatgga  22415100                                                <---------YAB1                                              <---------ICU4                                     ------------>CBF                                    --------->ANAC58                                    --------->ANAC58                                    --------->AtLEC2                                 <---------KAN4(2)                         <--------ATHB1       -------->HAHB4            ---------->DOF2                        <---------ATHB51      --------->YAB1         <---------------AGL15       --------->ARR14(2)<------------ATHB5  --------->ICU4          --------------->AGL15       <---------ARR14(2)--------->YAB1      <---------ATHB51  <---------------AtSPL8     --------->LBD16    <---------ATHB12  <---------AHL20(2)   --------------->AtSPL8    --------------->AGL15<---------ICU4   --------->AHL20(2)--------->AHL20(2)   <-----------------AG --------->ICU4    --------->AHL20(1)<---------AHL20(2)    --------->GLK1(2)   <-----------------AGL1--------->ATHB51 <---------AHL20(1)--------->AHL20(1)   <---------GLK1(2)   ==================================================================================MADS_MADS --TOE2(3)          ------------>CBF--------->ANAC46   --------->AHL20(2)      ----------->ARR10   aattctccgaatatggaataagaccaataatggggaacatgcaattaattatgaagaataaataaaatgtactataaagagaagaatctctgtctgtctg  22415200                                                                                       --------->LBD16                                                                                      --------->ANAC58                                                                                      --------->ANAC46                                                                                      --------->ANAC58                                                 <----------ID1           --------->YAB1            <                   <---------ANAC58        <------NtERF2                 <------ZmHOX2a(2)          <                   <---------ANAC58       --------->ANAC58              --------->ARR11(3)       <---                <----------DOF2           ----------->GT1    <---------TOE2(3)       <---------LBD16<            --------->GLK1(1)             --------->ANAC58   <XXXXXXXXXXXXXXXXXXXXMIR863-5P      <---     <------------CBF               --------->TOE1(2)   --------->ATHB12<---------ARR11(3)  ---------   tctgtgtaattggggtttctttcttgcaagtgtttcaacatgggaggcaaaaaaacaaagattgagattaagaagatcataaacaaacccgcaaaaacgg  22415300                                                                                           ------>ZmHOX2a(1)                              --------->LBD16                                           ------>NtERF2                             --------->HSFB2a(2)                                       <---------ARR14(2)                             <---------HSFB2a(2)                                       --------->ARR14(2)                     --------->ARR11(3)                                               --------->ATERF1(1)      --------->ANAC46       --------->ANAC46                                        <<<<<<<<<AtERF-4 <----------DOF2     <---------ARR11(3)                           --------->ANAC58   <---------RAP2.3(1) ---------ANAC58    <------MYB46(1)                               --------->ANAC58   <---------ATERF1(1) ---------ANAC58    <------MYB83             <----------DOF2 --------->ANAC58       <---------RAP2.3(2) ------MYB52(1)--------->ANAC58            --------->ZAT2    --------->ANAC46       <---------RAP2.6(2) ---------ANAC46   <---------AtMYB61 <-----------HVH21------>ZmHOX2a(1)        --------->YAB1 -----P  ---------->DOF2    <---------LBD16<---------ZAT2    --------->ANAC58  --------->TOE2(3) >MYB52(1)     --------->ANAC58 ---------->DOF2  ---------->ID1--------->MYB46(3)  <---------At4g35610   ttgctttcacaaaacgcagggaaggtctcttccgcaaagcttcacagctttgtctcctctctccagccactcaaatcgcaatcttagcggctcctatgac  22415400                                               <---------TOE2(3)                      --------->ANAC46                                               <---------TOE1(3)                     --------->RAP2.6(3)                                            --------->DOF5.7(2)                <-----------------AGL1               <----------DOF2            --------->ETT(2)                    ------>ZmHOX2a(1)         --------->ANAC58       --------->KAN4(2)                          ------>MYB83         -----         --------->ANAC46     --------->WRKY18(1)                     <-----------GT1--------->SPL7         --------->ANAC58    <-----------HVH21<---------DOF5.7(2)<----------DOF2 ------>ZmHOX2a(1)   <-----------ARR10    <----------DOF2   <---------ETT(2)       <---------DAG2<-----------------AG  <---------CCA1(2)<-----------GT1   ------>ZmHOX2a(1)    ------>ZmHOX2a(1)------>MYB46(1)      -----   ttccaaatctcacgcttctttctactctttcggtcattcctctgtcgataacgttgtctcctctctgctttatgaccatcctcctcttacggcaaaccaa  22415500                                                 <---------ANAC46                                               --------->MYB52(1)                                               ------->TEIL                                               --------->ARR14(2)                           ---------                                               <---------ARR14(2)             <-------GAMYB <--------                                            <---------ANAC58                 <---------MYB46(3)                                            <---------ANAC58                <---------RAP2.6(2) -----                     <---------AtMYB61      <---------ANAC46                <---------DEAR3(1) <-----     <-----------HVH21  <---------ANAC46    --------->ANAC55(2)      ---------->DOF2       <---------ANAC46 ---->ANAC58   <---------TOE1(3)            <---------ANAC55(2) ----------->GT1 <---------MYB46(3) ---->ANAC58   <---------TOE2(3)           <---------TOE2(3)   <------ZmHOX2a(1)<---------DEAR3(1)   gacaacaggtcagggttagggttttggtgggaagacaaacgttttgacgtatcggagaacgttgaggagttaaaagaggcggtcgatgctgtttcgagga  22415600                                  --------->REM1(2)                                       <---------ARR14(2)                                 ----------->HVH21                                        --------->ARR11(3)                                --------->LBD16                                  --------->ALFIN1                               <---------ANAC58                                 <------ZmHOX2a(1)                         <---------ATHB12                         --------->GLK1(2)   <------ZmHOX2a(1) >HSFB2a(2)           <---------AHL20(2)     ---------->DOF2     <---------GLK1(2) <------ZmHOX2a(1) -HSFB2a(2) --------->At4g35610<---------ANAC58     --------->ALFIN1         <-----------RAV1(2) ---->ARR11(3)       --------->AHL20(2)--------->ZAT14 <---------TOE2(3)  <---------ICU4  --------->ARR14(2) -ZmHOX2a(1)<---------At4g35610<---------ANAC46   --------->CCA1(2)       --------->YAB1  <---------ARR11(3)   tgttgaacaatgtgagatgccgattaaatgatgccgtgaagagtactcaaagagatggaggtttagagattcttcatcatcaggaggaggaagttcttca  22415700  Previous    Next  AGI:  At1g60880.1    Description:  AGL56 (AGAMOUS LIKE-56); DNA binding / transcription factor. similar to AGL55 (AGAMOUS-LIKE 55), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G60920.1); similar to At3g12510-like protein [Boechera stricta] (GB:ABB89768.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 22415240    to: 22415845    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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