Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 <---------ARR14(2)               <---------TOE2(3)  <------MYB46(1)    ---------->DOF2 <---------WRKY18(1) ---------TOE2(3)  --------->WRKY38(1)                                       --------->ARR11(3) ---YAB1       <---------TOE1(3)  <------MYB83                               <---------ARR11(3) ---TOE2(3)--------->CCA1(2)   --------->ARR14(2)                <----------DOF2           ------>ZmHOX2a(2)   ttgagataaagagatttgaggttgactaaaccagataggttagggattgagccagagagagagtttcctttgaaactaagaactctaagttgatccaatt  22340200                    --------->ZAT18                                                                 -                 <---------ANAC58                                                             -------                 <---------ANAC46                                                             <------                 <---------ANAC58                                              <---------ANAC58     -               --------->WRKY38(1)                   <----------DOF2           <---------ANAC58   <--              <---------MYB52(1)     <---------GLK1(2)                     ------->TEIL ------>ZmHOX2a(1)             <-------GAMYB       <-------TEIL     --------->ANAC58      --------->AtLEC2=============            <---------ANAC46 <---------TOE2(3)    --------->ANAC58 <----------DOF2      =============   ggttcaaactcttgccgttgagtgagccactgaggttcaaattctcaagaacaagctttgagactcttcctttcatgcatttcttgactccttcccagtt  22340300             --------->ANAC58             --------->ANAC46             --------->ANAC58     ==============HOX2a_HOX2a     ------>ZmHOX2a(2)     =====================================HOX2a_HOX2a    ===============HOX2a_HOX2a    <------ZmHOX2a(2)   <---------ARR11(3)   <---------AGP1   <---------ARR14(2)   <-----------ARR10   --------->ARR14(2)   --------->GLK1(2)                                                                    --------->LBD16   --------->ARR11(3)                                                              ----------->HVH21 -------->ANAC58                                                                  ------>ZmHOX2a(2) -->ZAT2    ------>ZmHOX2a(1)                                                    <---------At4g35610 ---ZAT2    ================================HOX2a_HOX2a                         <---------ARR11(3) -------->ANAC58                                                             <----------DOF2 -------AtLEC2                                --------->ATHB12              <---------ANAC58       -- ===========HOX2a_HOX2a              <------ZmHOX2a(2)                      <---------ANAC58 -------- ==========HOX2a_HOX2a             <------ZmHOX2a(1)                --------->REM1(1) <---------LBD16   gcaaggatctgttcctcgccatggaatcgaatttgaaggatcaatggatgatttcaaactcagtagagcttcaacatcgcttgatctcaccggagaaatc  22340400                                                                              --------->ICU4                                                                         --------->ANAC58                                                                         --------->ANAC58                                                                         --------->bZIP60(2)                                                                         --------->ANAC46                                              <---------YAB1        <-----------GT1                                              --------->ICU4   <---------CCA1(1)     --------->ANAC58                       --------->YAB1     <---------RVE1(1)     --------->ANAC58                      <------ZmHOX2a(2)  <---------ARR11(3)         --------->At4g35610   ---------->DOF2                        --------->ARR11(3)  <---------GLK1(2)--------->ATHB12 -------->DOF2                            <---------ARR11(3)  --------->ARR11(3)         <---------At4g35610 ->GLK1(1)--------->MYB46(3)      >>>>>>>>>TBF1<---------ICU4<---------RVE1(1)<---------YAB1---------   aaaaagaaagcaaacaccaagaagaacatacaagaagaagaagagatcataatggaattcaagagattttttaccaagtcatgatagaatcagcagttgt  22340500                                                     --------->ANAC58                                                     --------->ANAC58                                                   ---------->DOF2                                                  ----------->HVH21                                                 <-------MYC3                                                 ------->MYC3                                                --------->TGA1a                                                --------->O2                                                --------->ANAC55(2)                                                <---------ANAC55(2)                                                ==============bZIP_DOF                                                <---------O2                                                <---------TGA1a                                    <---------At4g35610                                    --------->At4g35610    <---------ATHB12                               ----------->HVH21==============bZIP_DOF                         <---------ANAC55(2)    <---------ANAC46                                    <                         --------->ANAC58     <-------------DYT1                                   <-                         --------->ANAC58    ----------->HVH21                        <------ZmHOX2a(1)                        <---------LBD16     <-----------HVH21            *TSS  --------->ZAT18-------     <------NtERF2    <------ZmHOX2a(2)   <---------ARR11(3)            ============================= >At4g35610          <-----------HVH21    --------->ARR11(3)            <----------DOF2   -----------   aagtggcatcgatgaagaagctcgatcacggacatgacagcgaagatgtcacgtgaagccaatgcttcttgatactttaagagcagtaggagaagttaat  22340600                                                             <---------ZAT14                                                             <---------ZAT18                                                             --------->ZAT14                                                           --------->ZAT14                                                           --------->REM1(2)                                                           <---------ZAT14                                                           --------->ZAT18                       ----                                                           <---------ZAT18                       ----          ---------->ID1                                <---------ANAC46                         <---      <---------TGA1a                                 <---------ANAC55(1)                        ----      --------->O2                                    <---------ANAC58                           <---      =============================bZIP_DOF     <---------AHL20(2)                              <----      <---------O2                              <---------YAB1                                  ----- -----------ARR10                            --------->AHL20(1)                                 <---- --------CCA1(2)            ------------>CBF <---------AHL20(1)                             <------ZmHOX2a(2) -->WOX13(1)        <-----------GT1  <-------TEIL     <---------ANAC58              --------->CCA1(2) ===============bZIP_DOF<----------DOF2   --------->AHL20(2) --------->ZAT18       --------->ARR14(2) >GT1 --------->TGA1a   <---------DAG2--------->YAB1  <---------ANAC46             <---------ARR14(2)   caaatctcacttgtctcacttgtttcctttttcaatgcattcataaaaatattatttcgtgtgtacacttccactgttttacacagatatgtagatcaat  22340700         <---------ANAC46                    <---------TOE2(3)      <-----------RAV1(1)                   ---------->DOF2 ----->YAB1                               <---------YAB1 ---->ATHB1                            <---------AHL20(1) -----ATHB1                            --------->ARR11(3)      --------->ANAC58                     - ----->ATHB51                          <---------ARR11(3)      --------->ANAC46                     < ------ICU4                            --------->AHL20(1)      --------->ANAC58      --------->ANAC58 -----ATHB12                      ----------->GT1 ----------------------->TaNAC69(2) --------->ANAC58 ---->ICU4              ---------->DOF2--------->ICU4   <----------DOF2       <----------DOF2-------- -----ATHB51        ------------------------>ANAC81   ---------->ID1          =======================   aattgtttatggtggagaccaagattaaaagaagagaagaaaatattaaagtttttgtctttttcactcaagtctttgaactttctcaagacaagtgctg  22340800                                                      --------->YAB1     <---------ANAC46                             --------->ATHB12     <---------TGA1a                             <------ZmHOX2a(2)     <---------ANAC58                            =========================HOX2a_HOX2a     <---------O2                                <---------YAB1     <---------ANAC58                           --------->ARR11(3) -------->At4g35610                             <---------ARR11(3)                            <------ ---------At4g35610  ----------->RAV1(1)       --------->GLK1(1)                --------->ANAC58 ->At4g35610        <----------ID1    <---------GLK1(1)                         --------->ANAC58 ==============bZIP_DOF               --------->GLK1(1)            <------ZmHOX2a(1)  --------->YAB1   agtgctgacttgggaagagaaaacgacagaaattggagggaaatgccagagatcattgatggtattggaggaacatagtttcaagtaaacatatttttaa  22340900                                        <-----------GT1                                    <---------ICU4                                    -------->ATHB1                                    --------->AHL20(2)                                    <--------HAHB4                                    --------->ATHB51                                    <---------AHL20(2)                                   <---------ATHB12                              ----------->GT1                                   <---------ATHB51                     <---------HSFC1(2)                                 --------->WOX13(1)                     --------->HSFB2a(1)                              --------->ANAC58                          --------->HSFC1(2)                              --------->ANAC46                          <---------HSFB2a(1)        --                        <---------At4g35610                             <------MYB46(1)     ---------          <---------MYB52(1)  --------->ANAC58                          <------MYB83  ---------->DOF2     --------->GLK1(2)  --------->At4g35610                             <---------MYB46(3)<------ZmHOX2a(1) ---AHL20(2)        <-----------GT1--------->ICU4                      <---------AtMYB61 ----------->GT1   ttcaactaatctgttattcgattttctgcttcaagcaattatttcccaatctctctcgttgagtaagagggggatggttcgaaatgaaaaaaggatacaa  22341000                                                              <------MYB83                                                              <------MYB46(1)                                                             --------->MYB59                                                          <---------ARR14(2)                                                       --------------->AGL15                                                       <---------------AGL15                                                      <-----------------AG                                  --------->YAB1      <-----------------AGL1                                <---------ARR11(3) --------->MYB46(3)                             <--                            --------->YAB1         <---------ABI4(2)                             ----                         --------->YAB1           --------->ANAC58                            <------     ---------->DOF2    --------->ICU4            --------->ANAC58                           -------- --------->GT1          <---------ATHB12          --------->ANAC46                    --------->DAG2 >CCA1(2)   ----------->GT1<---------YAB1  --------->YAB1 --------->ARR14(2)         ---------->DOF2   cttgtaaaaaagaattgtataactcaattatcaaaatcatatcagttataacaagcaccgtatttggtagacaaaacttgaagtttaaaaagcacataat  22341100  Previous    Next  AGI:  At1g60630.1    Description:  leucine-rich repeat family protein. similar to ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G10850.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15418.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80935.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat, N-terminal (InterPro:IPR013210); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 22338327    to: 22340573    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g60640.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68771.1); similar to unknown [Populus trichocarpa] (GB:ABK93752.1); contains domain C2H2 and C2HC zinc fingers (SSF57667) Range:  from: 22341040    to: 22343337    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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