Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                  <--                                                                                                  ---                                                                                                -----                                                                                                -----                                                                                                <----                                                                          <---------TOE1(3)     <----                                                                          ------->TEIL          <----                                          <---------RAP2.6(2)            <---------DOF5.7(2)    -----                                <---------AHL20(2)                     ----------->HVH21    <--------                          --------->AHL20(2)                      <-----------------------TaNAC69(2)-          ---------->DOF2 <---------AHL20(2)                      <-------TEIL              ------->TEIL   tcgaagttaatacaaagaacattgaaatttatatatacttggtttcggctcggttcaaatttagaatatacatgtgaacgttgaagagtagatggatgta  22337200    <-------TEIL ------>TEIL -------TEIL ---------TOE1(2) -------->SPL7                                                                                   <--- -------SPL7    --------->ANAC58                                                                 ---- ------>TOE1(2) --------->ANAC58                                                                <---- -->TEIL   --------->YAB1                                                                       ----- ---------->AtSPL3                                                                              ----- ---TEIL  <-------TEIL                                            --------->ANAC58              <---- -----------AtSPL3                                                --------->ANAC46        <---------ZAT14 -----------AtSPL8                        ------->GAMYB<---------ICU4  <---------MYB52(2)----------->RAV1(1) ---------->AtSPL8    <---------ZAT14  --------->MYB52(1)         --------->ANAC58 --------->MYB52(1) -------AtSPL3---------->DOF2  <---------ZAT14    <------ZmHOX2a(2)------->GAMYB <---------MYB52(2) -------------->AtSPL3--------->ZAT14  ----------->RAV1(1)<-----------GT1      --------->ZAT6   <----   cgtacgtacacattcatcaagcactgaacagagtgaagaaacaacagaacagatcaatttttacaacaacgaaacaaacaaacactaacgacaacacaga  22337300                                                      ------>MYB46(1)                                                    ------->GAMYB     ---------->DOF2                               --------->MYB46(3)   --------->ANAC58                               -------->P  --------->MYB52(1)   --------->ANAC46                               --------->MYB52(1)   --------->ANAC58                              --------->MYB55(1) ------RVE1(1)                                   --------->MYB52(1)                              ---- ----->GLK1(1)                 --------->At4g35610------>MYB83<-----------GT1                    ---- -----ARR11(3)                 <---------At4g35610------>MYB46(1)                      <---------AHL20(2) ---->ARR14(2)           --------->AHL20(2)     --------->AtMYB61                      ----------->TBP ---->ARR11(3)      <---------ANAC46           --------->MYB46(3)          --------->At5g28300   ---- -----GLK1(2)    <---------RAP2.6(2)  --------->AtLEC2------>MYB83        ----------->GT1        ---- -----ARR14(2) <-----------RAV1(1)------>NtERF2<---------MYB52(2)------->GAMYB         --------->AHL20(2)   tattcacgaaagtcttgttgtggccgataaatttgctgccatgctagaaaccaaccgaacatattaaccgaaaaaactgtaaatgacatataaatagcca  22337400                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                          --------->WOX13(1)                                                                                         --------->AHL20(2)                                                                                         <---------AHL20(2)                                                                                      --------->YAB1                                                                                      <--------ATHB1                                                                                      <---------ICU4                                                                                      -------->HAHB4                                                                                      <--------HAHB4                                                                                      --------->ATHB51                                                                                     <---------YAB1          <---------At4g35610                                       ---------->DOF2  --------->AHL20(2)          --------->At4g35610                                   --------->WOX13(1)   <---------ATHB51        --------->YAB1                                      --------->YAB1           --------->ICU4 ----->ANAC58                      <----------DOF2         <---------YAB1          --------->YAB1 ----->bZIP60(2)                <---------RAP2.6(3)     <---------YAB1            --------->AHL20(2) ----->ANAC46          --------->ZAT18          --------->YAB1<---------YAB1      <---------AHL20(2) ----->ANAC58   <-------TEIL   --------->RAP2.6(2)   ------>ZmHOX2a(1)           --------->AHL20(2)   cgaaactctatcagcacatacattatgcactggccgtcttttttttagaatcatccttctcattataaatcaaagaaacacaaattaataattaatcacg  22337500                                                                                      --------->ANAC58                                                                                      --------->ANAC46                         ----------->GT1                                              --------->ANAC58                 --------->YAB1                                                    --------->ZAT14                <---------YAB1                                                     <------NtERF2 --->ANAC58     <---------AHL20(2)                                                 <---------ZAT14 ----ANAC55(2) --------->AHL20(1)                                                  --------->At4g35610 --->ANAC55(1) --------->AHL20(2)                --------->AHL20(2)                <---------At4g35610 --->ANAC58 --------->AHL20(2)              ------------>CBF              ------------>CBF ---------- --->ANAC55(2) <---------AHL20(1)--------->ARR11(3) <------------CBF     <<<<<<<<<<<<<<<<<LFY       <   tattcaaactacaaaaatataataacacagaaaaatatcaagaagtttcaattacattgtttttgttttctcaaaaaacaatggctgcacacaaaaagag  22337600                                      --------->YAB1                                      --------->ATHB12                                     <---------YAB1                                   --------->YAB1                                  <---------AHL20(2)                               --------->AHL20(1)                               <---------AHL20(1)                               <---------AHL20(2)                               --------->AHL20(2)                              --------->AHL20(2)                           <---------ICU4             <----------DOF2 <---------YAB1     --------->LBD16       -------->HAHB4    --------->ANAC46       --------->ATHB12        <---------ARR14(2)   <---------LBD16         --------->YAB1          --------->ARR14(2)                      ---------- --------->ARR14(2)       --------->ICU4       <---------LBD16<------ZmHOX2a(1)          <---------YAB1 <---------ARR14(2)       <---------ATHB12     --------->At4g35610                --------->YAB1 >DOF2 <----------DOF2    <---------YAB1       <---------At4g35610        <---------AHL20(2) ---------CCA1(2)       --------->YAB1<---------ICU4         <----------ID1      <---------YAB1   tcatatccgcattttctttgtttcagtaatgattatattatcattgttcagcggatttggagaaggacaaacatatataaactataatggtatgaaagga  22337700                                                                                                   <-                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                              <------                         --------->GLK1(2)                                                   <-------                <---------At4g35610                                                          <-------           <--------P   <---------GLK1(2)                                               <-------MYC3       <-----------RAV1(2)                                        --------->YAB1     <---------ALFIN1  <---------ICU4--------->At4g35610                  <---------ZAT18    ----------->GT1 ------->MYC3 --------->ICU4----------->RAV1(1) --------->GLK1(2) --------->ZAT14 <---------MYB46(3)--------->ANAC46 >DOF2 ====================RAV---------->DOF2      <---------At4g35610<-------GAMYB <---------REM1(2)   gacataattccaggttgcagcagtaagaatcccaaagaatgtgtcaaaattccagcatactcttacaatcgtggttgtgaaatctctacacgttgtcaac  22337800   ------->GAMYB --------->At4g35610 --------WRKY12 ----->TOE2(3) --------TGA1                                         --------->ARR14(2) ----->TOE1(3)                          <---------AHL20(2)                ---------->DOF2          <- ---->ANAC46                         ----------->GT1  <---------ARR14(2)<---------YAB1             <- ---DOF5.7(2)             <---------TOE2(3)  <---------ICU4          <---------YAB1               <-- --WRKY38(1)           <---------WOX13(1)   <---------ATHB12      <---------YAB1                  --- --WRKY12           <---------AHL20(2)  --------->AHL20(2)        <---------AHL20(2)<-----------GT1--   gtcaacagcattcgagttcgagttaattgatgtatgatatgtttaaatcattttcgaatatgaagttttttattattaaagtgatattactaactcaaat  22337900                                                               --------->ATHB51          <---------TOE1(3)                                    -------->HAHB4          <---------TOE2(3)                                    <--------ATHB1          --------->MYB59                                      --------->ATHB12          --------->DAG2                                      <---------ATHB51     <---------TOE2(3)                                        <---------YAB1     <---------YAB1                                         --------->YAB1   --------->YAB1                                         <---------AHL20(2)   -------->HAHB4                                 --------->AHL20(2)   <---------ICU4                                <---------YAB1<---------ICU4  <---------ATHB51                             <---------AHL20(2)  --------->ICU4                              <---------AHL20(2)   --------->ATHB12 --------AHL20(2)                             --------->AHL20(2) <---------WOX13(1) --------YAB1 <-------TEIL          <---------LBD16<---------AHL20(2)    <----------DOF2 -------AHL20(2)            <----------DOF2<---------AHL20(2) --------->ICU4 ------>AHL20(2)<----------DOF2    ----------->RAV1(2)    --------->AHL20(2)            ---------->DOF2 ------->AHL20(2)        <-----------GT1   --------->AHL20(2) <---------AHL20(2)   <---------YAB1   tttaattatggtaaggttctttccatttttctttgtaacctggatttatttattatatgttttaataattgatttctttacccctacgattaaagcccaa  22338000               --------->LBD16              <---------------AGL15              --------------->AGL15                  <---------HSFC1(2)          --------->At4g35610              =========================================MADS_MADS                 <---------At4g35610            XXXXXXXXXXXXXXXXXXXXX>MIR830*            <---------HSFB2a(1)     --------->ANAC58       <      --------->ARR14(2)                             --------->HSFC1(2)  --------->ANAC58          <-      <---------ARR14(2)                             --------->HSFB2a(1) --------->ANAC46         <--      <---------ARR11(3)             <-----------------AGL3              --------->ANAC58         ---      ------->TEIL        --------->ATHB12       ----------->GT1   <----------DOF2             <-----     <---------CCA1(2)   --------->AHL20(2)   <------ZmHOX2a(1)   <---------ANAC58       <---------TOE1(3) <---------ANAC46        <---------AHL20(2) <---------TOE2(3)     <---------ANAC58       <---------TOE2(3) <---------ANAC55(1) ----------->GT1----------------->AGL2   <----------DOF2 --------->ANAC58  <-----   gttaagtgtatctttcccccaaatagtttaattggaagccctaatttaggaaggaaatttctgcttttgctttagacgcaaggagctgtttagggttttg  22338100  Previous    Next  AGI:  At1g60620.1    Description:  ATRPAC43 (Arabidopsis thaliana RNA polymerase I subunit 43); DNA binding / DNA-directed RNA polymerase. similar to ATRPAC42 (Arabidopsis thaliana RNA polymerase I subunit 42), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT1G60850.1); similar to ATRPAC42 (Arabidopsis thaliana RNA polymerase I subunit 42), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT1G60850.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO45155.1); contains InterPro domain DNA-directed RNA polymerase, insert; (InterPro:IPR011262); contains InterPro domain DNA-directed RNA polymerase, RpoA/D/Rpb3-type; (InterP Range:  from: 22334771    to: 22337189    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g60625.1    Description:  RALFL6 (RALF-LIKE 6). similar to RALFL7 (RALF-LIKE 7) [Arabidopsis thaliana] (TAIR:AT1G60815.1) Range:  from: 22337581    to: 22337826    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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