Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <---------YAB1   <---------YAB1 -------->ARR14(2) -------->GLK1(2) ---------ARR14(2)                                        ----------->GT1 -->AGL15       ------>ZmHOX2a(2)                        --------->DAG2 ---AGL15      <------ZmHOX2a(2)                        ---------->DOF2                     --------- ----AGL2     --------->ARR14(2)                <---------YAB1                  --------->YAB1 ----AGL3     <---------ARR14(2)             --------------->AGL15----------->GT1          <---------TOE1(2)   agaatatgattattcagatcgggtttgtttagaaatcgacatttctacttatatttggaaaagttatatagtagaaaatcaaacaaaatgtcgaatgtta  22334400                        <---------ARR11(3)                        --------->ARR11(3)                <-----------GT1                   <---------GLK1(2)     --------->DOF5.7(2)             <---------ARR11(3)        <---------YAB1                 <---------ANAC46           --------->ICU4           <---------AHL20(2)               ---------->ID1           <---------YAB1           --------->AHL20(2)            <----------DOF2 -->GT1  --------->YAB1<---------CCA1(2)--------->YAB1         <---------MYB52(1)               <----   tatttctcgtttcatgattttctatatatctcatttgtttaattataagacagattgtttagttcgttcttttcgtttactgttttctcaaatttgtttt  22334500                            --------->YAB1                           <---------ATHB12                          ------>MYB46(1)                 <---------DEAR3(1)              --------->ARR14(2)           --------------->AGL15           <---------------AGL15          ----------------->AGL3          <-----------------AGL3          <-----------------AGL2     --------->ARR11(3)          ----------------->AG   --------->YAB1          <-----------------AGL1<---------AHL20(2)          ----------------->AGL1--------->AHL20(2)        <-----------GT1   ------>MYB83    <---------AHL20(2)   --------->WOX13(1)                              --------->AHL20(2)  <---------RVE1(1)     --------->AtMYB61   <-----------GT1   <---------AHL20(2)      <------MYB46(1) <---------ARR11(3)  ------>NtERF2  --------->YAB1            --------->AHL20(2)      <------MYB83 --------->ARR11(3) --------->DEAR3(1)  <----------DOF2 <-------GAMYB--------->AHL20(2)           <-- <---------GLK1(2)  ----------->HVH21<---------ARR11(3)----------->GT1--------->AHL20(2)          <-- -----ANAC46  <---------ARR14(2)<---------YAB1         <---------MYB46(3)<---------AHL20(2)       <--   gtagattttttttccatattcggcgaccaatcatataattatcttttaactaatatgtggttaattaaaaaataaaaaaatgtcgatttggttcggactt  22334600                                                               <---------SPL7                                                               <------MYB83 --------->At4g35610                   <---------MYB46(3)                          <------MYB46(1)                <---------ANAC46                            <---------MYB52(1)   <---------DEAR3(2)                <------MYB83                             <---------LBD16   --------->RAP2.6(2)                <------MYB46(1)                      ------>MYB83  <---------MYB46(3)               --------->MYB111(1)                   ------>MYB46(1)     --------->At4g35610               --------->MYB46(2)                  ------->GAMYB <---------ORA47(1)               <---------AtMYB61                   --------->AtMYB61  <-------TEIL               --------->MYB111(2)                 <---------MYB59 <---------DEAR3(2)     <---------GLK1(2)  ----------->GT1          -------->P <-------GAMYB<---------At4g35610      --- -------TOE1(3)--------->MYB55(2)               --------->WOX13(1)<---------DEAR3(1)         -------- -------YAB1 <---------MYB52(1)             --------->GLK1(1)<--------P<-----------RAV1(2)   -------- -------TOE2(3)<---------MYB46(3)  ---------->DOF2--------->MYB46(3) <-----------HVH21       --------   aagattagaatttcggtttggtggtaacgaaaattttaaaagtcagaaatcaaccaaactccggttggacggttcagccgcttcggttcggacttaagcc  22334700                                           <-------MYC4                                           ------->MYC2                                           ------->MYC4                                           -------->ABF1                                           <-------MYC3       --------->YAB1                      ------->MYC3    ================================================bZIP_DOF    <----------DOF2                        <-------MYC2  <---------RAP2.6(3)                     --------->ANAC55(2)  ------>NtERF2                           <---------TGA1a <---------------AGL15                    --------->O2 --------->RAP2.6(2)                      <---------ANAC55(2) --------------->AGL15                    --------->TGA1a              *TSS ================================================================================MADS_MADS ------>AtLEC2                            <---------O2 --------->TOE2(3)                            - ->ANAC58                                 --------->ANAC46       --------------->AGL15--------->ANAC58 ->ANAC46                               <------------OsbHLH66 <-----------GT1         --------->ANAC58 ->ANAC58         ------->TEIL --------->HSFB2a(2)     --------->TOE1(3)   <---------AHL20(2)  ------   atgccgctattagaaaaatggatgtttttttttctagtattcacacgtgtccataaaccctaattttccagttttatgaaattgaagaacgaaattgaag  22334800                                                                                       --------->ALFIN1                                                                                     <------ZmHOX2a(1)                                                                            <---------ZAT14                                     ------>ZmHOX2a(1)                      <------NtERF2           -  ----------->GT1                   --------->TOE2(3) <---------GLK1(2)     <---------ZAT2--------->ZAT18 --------->DAG2              ------>ZmHOX2a(1)        --------->ARR14(2)    --------->ZAT14  <------- --------->DOF2        <---------At4g35610        <---------LBD16           <---------At4g35610 <---- ----->GT1         <-----------GT1  --------->TOE1(3) <---------ARR14(2)    --------->At4g35610------   tgaaaagtgaaatcgtgcaattttcatcttcctcttctccttaaaccctgatttcggattctcacaatcgaacttggctgcagagaaggatggggactaa  22334900                                                                            -------->P                                                                            ------>MYB83                                                                            ------>MYB46(1)                                                                            --------->MYB52(1)                                                                     <---------bZIP60(2)                                                                     <---------ANAC58                                                                     <---------ANAC58                                                                  ----------->HVH21       --------->LBD16                                                            <---------GLK1(1)            --------->ANAC46                                                           <---------ARR11(3)           <---------LBD16                                                    <---------ARR11(3)     ------>ZmHOX2a(1)------->TEIL                                           --------->ARR14(2)   ----------->RAV1(2)    ------>ZmHOX2a(1) ---------->GT1                            <---------ARR11(3)------>ZmHOX2a(2)    --------->GLK1(1) --MYB52(2)                ---------->DOF2 --------->ARR11(3)=====================HOX2a_HOX2a      <- -----TOE2(3)    <---------WOX13(1)        <---------ARR14(2)=================================HOX2a_HOX2a --->MYB52(1) <---------YAB1             ----------->ARR10 --------->ARR11(3)  --------->LBD16     --   cgaagtaacaaggattgtgactgatgaagaaaagagagaagcgaagaacttcaacatatttgatctccctgacgttcctaccggacttcctccgcatctt  22335000                 --------->WRKY38(1)           <---------------AtSPL8   <-----------GT1       --------->ZAT14                         --------------->AtSPL8   --------->ZAT6       <---------ZAT18         <---------ARR14(2)              --------->YAB1     <---------At4g35610       <---------GLK1(2)              <------ZmHOX2a(2) --------At4g35610            <------ZmHOX2a(1)--------------->AtSPL3 <-----------GT1               < ------->At4g35610 <---------ANAC46      <-------TEIL     <---------HSFB2a(2)<----------DOF2        -   gagctccagcgaactcgcgttgtctgtaagaaggattctaatattcatgtaagtactattctcgatcaaaatttacactctttttaagctatgtataagt  22335100                     ============================bZIP_DOF                     <----------DOF2              <---------AHL20(2)              --------->ATHB12          ------->MYC3             --------->AHL20(1)         <-------MYC3             <---------AHL20(1)        --------->O2              <---------ANAC55(1)             <---------AHL20(2)        --------->TGA1a           <---------ANAC58                 <--             --------->AHL20(2)  <-----------HVH21               <---------ANAC58                 <-- ---------At4g35610 <---------ANAC58   <---------O2              <---------ANAC46  ---------->DOF2<-- -------->At4g35610 <---------ANAC58   <---------TGA1a <-------TEIL --------->REM1(2)----------->GT1   tcagctaactagaaatttattggcttttctcagtgtgtcccatgtgggtttgctatgttcatcgatttcgtgtagatttacagagtaaagtttaaaactt  22335200           --------->At5g28300          ----------->GT1        <---------ZAT2        --------->At4g35610                                                          <---------ANAC58        <---------At4g35610                                                          <---------ANAC58     ---------->DOF2                                                           --------->ARR11(3)  --------->HSFB2a(2)       <------MYB83                              --------->ARR14(2)   --------->ATHB12  <---------HSFB2a(2)       <------MYB46(1)                           <---------ARR14(2)  <---------YAB1 -------ANAC58             --------->MYB59             <-----------RAV1(1)    --------->YAB1 <------- -------ANAC58             <---------AtMYB61       <---------ZAT14   <---------GLK1(1)    --------->ICU4 -------ANAC46    <-----------GT1       --------->AHL20(2)       ---------->ID1<---------ARR11(3)   gcttgtagaaagctgtgaatttactgagtttggtcttagcaatttaagaagattacactgtgggtttgtcgaaatccgaatgatattgagtgatgattgt  22335300  Previous    Next  AGI:  At1g60620.1    Description:  ATRPAC43 (Arabidopsis thaliana RNA polymerase I subunit 43); DNA binding / DNA-directed RNA polymerase. similar to ATRPAC42 (Arabidopsis thaliana RNA polymerase I subunit 42), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT1G60850.1); similar to ATRPAC42 (Arabidopsis thaliana RNA polymerase I subunit 42), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT1G60850.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO45155.1); contains InterPro domain DNA-directed RNA polymerase, insert; (InterPro:IPR011262); contains InterPro domain DNA-directed RNA polymerase, RpoA/D/Rpb3-type; (InterP Range:  from: 22334771    to: 22337189    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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