Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           <---------At4g35610                                                                                         <---------LBD16                                                                                         --------->At4g35610                                                                                      <------NtERF2                                                                                      --------->At4g35610                                                                                      <---------At4g35610                                                                                      <---------ZAT14                                                    --------->ANAC58                  <---------ZAT2                                                    --------->ANAC58             ------->GAMYB                        <---------ICU4  --------->At4g35610                    <---------At4g35610                 --------->bZIP60(1) <---------MYB52(1)                        --------->ZAT2        ----------->RAV1(2)     <---------ALFIN1  ---------->DOF2              --------->At4g35610       ------->TEIL    <---------ATHB12 <---------At4g35610                    <---------ZAT2      -- -----DOF2       <---------bZIP60(1)--------->TOE2(3)                       ------>ZmHOX2a(1)      <-   ttgagtctgtacctgagtgtcatcactcattccatcacccttagctccaaaatcaagcacattgaattgttgagagtcctcaactggctgcagcggaaga  22320200                                                                                        <-------GAMYB                                                                                        <---------ZAT2                                                                                        --------->ZAT2                                                                                        <---------At4g35610                                                                                        --------->At4g35610                                                                                       ------>NtERF2                                  <-------GAMYB                                       <---------ANAC46                                 --------->MYB111(2)                                  <---------DEAR3(1)             <------MYB46(1)     --------->MYB55(2)                                   <---------ATERF1(2)             <------MYB83        <---------MYB46(3)                                   --------->ATERF1(2)          <-------GAMYB       --------->MYB55(2)                                      <---------RRTF1(2)         --------->MYB55(2)   <---------MYB46(3)                                      <---------RRTF1(3)         <---------MYB46(3)<---------MYB46(3)                                         <---------DREB2C(2)         --------->MYB111(2) <---------AtMYB61                             <---------MYB52(1)        <---------AtMYB61 <---------AtMYB61                               <-------GAMYB<---------ERF1      <---------MYB46(3)  --------->ALFIN1                               <---------MYB46(3)     --------->ALFIN1     <---------DEAR3(1)                           <-----------HVH21--------->ATERF1(1)     <---------AtMYB61  <---------MYB46(3)                 ----------->RAV1(1)        <---------RAP2.3(3)   <------MYB83        --------->ALFIN1              ----------->HVH21--------->DEAR3(1)<------NtERF2   <------MYB46(1)  <-----------RAV1(1)           <---------ANAC46   --------->DEAR3(2)<---------MYB46(3)   <---------MYB46(3)  <---------AtMYB61         <------NtERF2   ----------->HVH21    <---------RAP2.6(2)  <---------AtMYB61 <---------AtMYB61           <---------MYB46(3)   --------->MYB46(3)<---------RAP2.3(1)  <---------MYB46(3)--------->ALFIN1           <---------RAP2.6(2)  ------->TEIL      <---------RAP2.3(2) <--------P<--------P  <---------DEAR3(1)   =============================RAV<---------TOE1(2) ------->ALFIN1    <-------MYC3 <--------P  <-----------RAV1(1)--------->At4g35610   <---------LBD16 ----------RAV1(1) ------->MYC3<-------GAMYB<---------AtMYB61<-----------RAV1(2)     --------->RAP2.6(3)   ggtgttggtggtggttggacatgtggtggtggtggttgttgaacttgtggtggctgtgacacaacaggtgaaccgtcgttggattttggcggctgagttt  22320300                                         <--------P                                        <-------GAMYB                                       <---------MYB46(3)                                       --------->MYB55(2)                                      <---------AtMYB61                                     ----------------------->TaNAC69(2)                                    <---------MYB46(3)                                   <---------DEAR3(1)                                   --------->ALFIN1                 <---------ANAC58             <---                                   <---------AtMYB61            <---------ANAC58                 ----                                --------->ALFIN1                <---------ANAC58                 <---                                <-----------RAV1(1)   <---------DAG2<---------ANAC58             ----                                <---------AtMYB61     <----------DOF2                          <-----                               ------->MYC3          <---------ANAC58      --------->ANAC58  --------                         ----------->HVH21<---------MYB46(3)   --------->MYB52(2)     ---------->DOF2          <---------AtMYB61    <-------MYC3          <---------ANAC58      --------->ANAC58 <------ZmHOX2a(1)   tcatcttcggttttggttttgacttatgggacatgtggtggtggttgttctcatggctttttggtttcttgctggacaaggaatcagacaaagaggagga  22320400        <---------MYB46(3)       <---------AtMYB61        --------->HSFB2a(2)    <-----------RAV1(1)         <---------HSFB2a(2)    <---------AtMYB61        ----------------------->TaNAC69(2)                        <---------ICU4  ------>ZmHOX2a(1)        ------>ZmHOX2a(1)                                           --------->ATHB12 ------GLK1(1)            <---------------AGL15                                       <---------YAB1 ----->GLK1(1)            --------------->AGL15                                --------->ZAT14 ------At4g35610         ----------------->AGL1                                ---------->DOF2   <--- ----->At4g35610         ----------------->AG                              --------->ZAT6        <--- -ZmHOX2a(1)             <-----------------AGL1                       --------->ARR14(2)       <----- ->ALFIN1           <---------ARR11(3)             <---------ZAT6    <------ZmHOX2a(1)--------->ICU4   gctcctatggtggtgtctccaatgtcttcctcttctggcaatgcaggtctctagagttgcagaccagaccaggattgtcactaaagtcatcattgtgatg  22320500                                      ---------->ID1                                    <-----------RAV1(1)      --------->TOE2(3)         <----------DOF2                                                 ----- ------ANAC58             --------->YAB1        <----------DOF2                             --------- ------ANAC58  ----------------------->TaNAC69(2)                                    <----------ID1 > ----YAB1 <-----------GT1<---------YAB1      <-----------GT1           <----------DOF2    ---------->DOF2   cttctcagcgttaaactctctctcgttatcatgtctttttgttgttttttctttactaaacaaaaaatgttctctttgtaatggtttgagacaaaagcag  22320600                                                       <---------TOE2(3)                ----------->GT1                       --------->DAG2            <------ZmHOX2a(1)   >>>>>>>>>TBF1<------MYB46(1)                      ---------->DOF2          <---------TOE2(3) ---->At4g35610 <------MYB83       *TSS             --------->CCA1(2)         --------->ANAC46 --------------->ANAC81 <-----------RAV1(1)        --------->ARR11(3)   <-----------TBP >>>>>>>>TBF1  --------->MYB59  <---------YAB1 ---------->DOF2<-----------RAV1(1) --------->GLK1(2)   aagaagaagaagagagtttggtttatttgttgttgttatagaatgaataaaaagataaaggaatttgtgggggtttatataaggaatcggtccaagaata  22320700                --------------->AGL15                <---------------AGL15               ----------------->AGL2               ----------------->AGL1               <-----------------AGL3               ----------------->AGL3         --------->O2                                                                           -----         <---------TGA1a                                                                    ---------         --------->ANAC46                                                                 --------->CCA1(2)         --------->TGA1a                                                                 <---------ARR11(3)         <---------O2                                           --------->YAB1    <---------ZAT18        <---------LBD16         ----------->TGA1    <---------AHL20(1)            --------->ZAT18       --------->MYB52(1)    <---------AHL20(2)     --------->AHL20(1)            --------->ZAT14   -      ----------->HVH21     --------->AHL20(2)      --------->ARR11(3)            <---------ZAT14   -   tagaacgactcacgggagcctaaaatggaattttatgacgaaagtttttttaaaaatattgttttctcataaacttagaaatattgcactagatatatac  22320800                                                                  <----------DOF2                                                         <---------------AtSPL8                                                         <---------------AtSPL3                                                    <---------KAN4(1)                                                    --------->KAN4(1)                                                   <---------KAN4(2) ---->ANAC46                         --------->ANAC58 --------->GLK1(2)                        ------ >CCA1(2)                            --------->ANAC46 --------->ARR11(3)                --------->HSFB2a(2) -------->YAB1 <<<<<<<<<<<<<<<<<LFY  --------->ANAC58--------->YAB1                     <---------HSFB2a(2) ---------->GT1--------->YAB1<----------DOF2    ----------->GT1----------->GT1      <----------DOF2   gatagtaatttagaaaatgacaatggaacttctttgcccaagaaacaaaatggaataatcttgtacggttttactgatatgtggttctttctgtaacatg  22320900                                              --------->AHL20(2)                                      <--------ATHB1                                      --------->ATHB12                                    <---------TOE2(3)                   <---------AHL20(1) -------->HAHB4                   <---------AHL20(2)<---------ATHB12                   --------->AHL20(1)--------->ICU4                   --------->AHL20(2)<---------YAB1      <---------ANAC58            <----------DOF2                --------->AHL20(2) --------->YAB1        <---------ANAC46      ---------->ID1       - ----->GT1 ------>ZmHOX2a(2)      <---------AHL20(2)     <---------ANAC58<---------DAG2     ---------   ttattttctatgatccactaaaatattagtatgtttttaatgattcactaaaatatgaggcttgtattcatcccaatttttggccttcttttgttatctt  22321000                                                           <--------HAHB4                          --                                                           --------->ATHB12                        <-                                                 <---------AHL20(2)                                <-                                             --------->CCA1(2)                                    ---                                            --------->ARR11(3)   --------->HSFB2a(2)              ---                                      --------->YAB1       --------->YAB1                         ---  ----------->GT1                     <---------ICU4       <---------ICU4                         --- --------->DAG2                      <---------ATHB12     --------->ICU4                   <---------YAB1 --------->DOF2   <-----------GT1    --------->ICU4       <---------ATHB12    --------->GLK1(2) <---- >ARR11(3)   <XXXXXXXXXXXXXXXXXXXXMIR4243   <---------ARR11(3)   <---------HSFB2a(2) ------>ZmHOX2a(2)   ggaaaagtaacttatgaaattttcagtttcaacatagaaatcatgagatatataatgggaatcatttctagtaatacaaaattctgatctattgtcattt  22321100  Previous    Next  AGI:  At1g60590.1    Description:  polygalacturonase, putative / pectinase, putative. similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT1G10640.1); similar to unknown [Populus trichocarpa] (GB:ABK95830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66096.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65317.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 22317835    to: 22320635    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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