Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   --------->AHL20(2)                                                                                 <---------AHL20(2)                                                                                <---------AHL20(2)                                                                             --------->AHL20(2)                                                                          --------->YAB1                                                                          <--------HAHB4       <-----                                                                         <---------YAB1      --------                                                                     --------->ANAC46  <-----------GT1                             <------------CBF                        --------->ANAC58 <-----------GT1                 >>>>>>>>>TBF1        <------ZmHOX2a(1)    --------->ANAC46 <---------YAB1------->GAMYB               *TSS        <---------YAB1             <---------YAB1 --------->ANAC55(2) --------->ZAT6 <------ZmHOX2a(1)         ------->TEIL          ----------->GT1     --------->ANAC58<---------AHL20(2)   agaggaattgaatttggaagaagaagatgaatattggagaggaaatgagaaatgttattacaaacaagtccacgtattattatttattttaacagtcgcc  22315100                                              <---------ANAC46                --------->ANAC58                                              <---------LBD16          <---------ANAC58                                  --------->AHL20(2)              <---------DAG2                                  <---------AHL20(2)              <----------DOF2                              --------->AHL20(2)     --------->MYB46(3)<---------ANAC58                          ------>ZmHOX2a(1)  <---------LBD16     <---------ANAC58 -NtERF2               ---------->ID1     ------->TEIL           <---------ANAC58        <----------DOF2 ->RAP2.6(2)----------->GT1   <---------AHL20(2)--------->LBD16<-----------GT1--------->ANAC58   cttatatttctaatttgttaattttgtcctaaatatttaaaatgagcctcggggaaccattgtttttgctttttcgtccccagcaaaatggctatatgtt  22315200                                                           <---------ICU4                                                           --------->YAB1                                                           <--------HAHB4                                                   <---------TOE2(2)                                                --------->YAB1                                             <----------DOF2                                          <---------ARR14(2)                                          --------->ARR14(2)                                          <---------AGP1  <---------ATHB12                                          --------->AGP1--------->WOX13(1)                            ----------->GT1 ------>ZmHOX2a(2)                                      <-                          <------ZmHOX2a(1)<------ZmHOX2a(2)                                      ---                          =========================HOX2a_HOX2a                         <---------ZAT14                          ========================HOX2a_HOX2a                          --------->ZAT14                --------->ICU4            <---------ARR11(3)                       <-----------GT1---              --------->CCA1(2)    --------->AHL20(2)--------->TOE2(3)       ------------>CBF     <--         ---------->DOF2<---------TOE2(3) --------->ARR11(3)          <---------MYB46(3)         <---   tgataaaaaaaaaaagacatgagtataaggatgaaaataaaacagatctttcatatgttaatcattttttggtgattacttcaatatactgtacaaaatg  22315300                                                                                           <---------YAB1                                                                                        <----------DOF2                                                                                      <------ZmHOX2a(2)                                                                                      <---------RVE1(1)                                                                                     <---------ARR14(3)                                                                                     --------->ARR11(3)                                                                                     <---------ARR11(3)                                                                                     --------->ARR14(2)                                       ----------->GT1                               <-----------ARR10                                      --------->DAG2                                 --------->ARR14(3)        <---------LBD16         --------->ANAC58                                     <---------AGP1       <---------ANAC46         --------->ANAC58                       --------->ATHB12------>ZmHOX2a(2) --------At4g35610              ----------->GT1                     <---------ANAC58 --------->AGP1 ---->TEIL----------->GT1     --------->CCA1(2)                     <---------ANAC58 <---------ARR14(2) ------>ARR14(2)             --------->ARR11(1)             <---------ANAC46 <-----------RAV1(1)  --- -------ARR14(2)            --------->YAB1  ------------>CBF<---------ANAC55(2)     <---------CCA1(2) ------CCA1(2)  --------->AHL20(2)   ---------->DOF2        --------->ANAC55(2)    ----------->ARR10   tatctgattttgtggaaaaaaaattcagaatgatacgaaaaaagtaaacaatatgtggaactacgtatgggcttgattactggggcagatcttttgattc  22315400                                                                       --------->ATHB12                             ----------->RAV1(2)                      <-------TEIL                             --------->At4g35610               ----------->GT1                           <---------ALFIN1             --------------->AGL15                        ------>ZmHOX2a(1)               <---------------AGL15            --------->At4g35610                    --------->ARR14(2)                 ----------------->AGL1            ----------->RAV1(2)                    <---------ARR14(2)                 <-----------------AGL1          <---------ALFIN1                   <---------GLK1(1)                   ----------------->AG       --------->TOE1(3) --->NtERF2     <---------ZAT18                 <-------TEIL  ----------->GT1     --------->TOE2(3)   ggcccatacattatgcagtgcaaatcctaacacctgagccatgaactacatacgtttgccaagttgggaaaattcatttgaaaaccctaacacctgagcc  22315500                           >>>>>>>>>TBF1                    --------->At4g35610                                                      --------                    <---------At4g35610                 --------->TOE2(3)                    --------                   --------->DEAR3(1)                 -------->P                             <-------                  <------NtERF2<---------KAN4(2)    <---------MYB59                          <-------                  --------->MYB46(3)   ----------------->AGL1                             <---------ANAC58                 ------>NtERF2--------->YAB1        --------->AtMYB61               --------->ARR11(3)                <---------ALFIN1      ------>NtERF2--------->DEAR3(2)         <------ZmHOX2a(1)                --------->DEAR3(1) --------->At4g35610------>MYB46(1)     --------->LBD16 <---------ANAC58               --------->MYB46(3)  --------->ZAT2  --------->MYB46(3)    <---------HSFB2a(2) <-------               <---------ABI4(2)   <---------At4g35610------>MYB83       --------->HSFB2a(2) --------   atgagcgacgatgaagagccaccgctgaagaagaataagctgccagtagaagaaccaaccttgattccttcacttccagaggagttgatattgagtatct  22315600    --------->O2                                                                           <---------    --------->TGA1a                                                                   --------->ARR14(2)   <------NtERF2                                                                      <---------ARR14(2)   --------->LBD16                                                                ----------------->AGL1 <---------LBD16                                                                  <-----------------AGL1 ->ARR11(3)                                                                      --------->MYB52(1) ->GLK1(2)                                                                       <---------At5g28300 ----ARR10                         ------>ZmHOX2a(1)                         ----------------------->TaNAC69(2) --ARR11(3)                ===============HOX2a_HOX2a                   <------ZmHOX2a(1) --------->LBD16 --ARR14(2)                ------>ZmHOX2a(2)                   ------>ZmHOX2a(1)<-----------GT1    <- ->ARR14(2)  <---------GLK1(2)    --------->TOE2(3)  <---------ALFIN1<-----------RAV1(2)<---------LBD16   tagcccgcgtctcgagattgtcttatcgatctctctccttagtctgcaagcgcttccactcgctccttacttcaggagagatttaccggttccggtcact  22315700                                           --------->YAB1                                         <--                                  --------->ANAC55(2)                                             <--                                  <---------ANAC55(2)                                           -----                                  <---------ANAC58                          <---------ANAC46  <------                                  <---------ANAC58                          <---------ANAC58  -------                              <---------ANAC58                              <---------ANAC58  <------ ----------->GT1              <---------ANAC58                   <---------MYB46(3)           ------- --HVH21                     <---------At4g35610                <---------TOE1(2)        --------->ANAC58 ----------RAV1(2)           --------->At4g35610     <---------SPL7 <-------TEIL         --------->ANAC58   atcaggttataccgagaattgtctctatgtgtgcttacgtttctctcatactggccgtagccatcgctggttcatgcttcgtgagaagaacaagtcaagt  22315800                                                                  <------MYB83                                                                  <---------MYB46(3)                                                                  <------MYB46(1)                                                                  <---------DEAR3(2)                                                                 <---------AtMYB61                                                                <---------MYB55(1)                                                               <-------GAMYB                                                              <---------MYB46(3)                                                              --------->MYB55(2)                                                              <---------DEAR3(2)                                                        <---------ANAC58                                                        <---------ANAC46                                                        <---------ANAC58                                                 <---------ANAC46<---------MYB46(3)                                                <------NtERF2<---------RAP2.6(2)                                               <-----------HVH21<---------MYB52(1)                                             <-------MYC3    <---------ANAC46                                             ------->MYC3    <---------ANAC58                                             ------->MYC2    <---------DREB2C(2) ----MYB46(1)  ------>MYB46(1)               <-------MYC2  ------------>AtMYB77 ----MYB83     ------>MYB83                 --------->ANAC58 <---------ANAC58 ---->ALFIN1 <---------ALFIN1               --------->ANAC58 <---------DEAR3(1)            <------NtERF2 ---TGA1a    --------->MYB46(3)       --------------------->WRI1<--------P               <---------ANAC46 -->O2       --------->AtMYB61        <----------DOF2 --------->ARR14(2)                <---------LBD16 ---O2      <------NtERF2          ------>ZmHOX2a(1)  <---------ARR14(2)   --------->ARR11(3) -->TGA1a  ------>NtERF2<-----------GT1     --------->ANAC46<------NtERF2  <---------ARR11(3)   gggtatgttttggcaccaatcccaatttcccattctccttctttgcacgcgtcgagtatcgtggcggttggttctaaaatctacaaaattggcggagtca  22315900                                                  --------->ZAT2                                                  <---------At4g35610                                            <---------ANAC46                                           <------NtERF2                                          <---------MYB46(3)                      <-----------HVH21                                       --------->TGA1a                       --------->DEAR3(1)                                       <---------TGA1a                      --------->MYB46(3)          <---------ZAT6               <---------O2                         --------->DEAR3(2)      ======================HOX2a_HOX2a--------->O2             --------->At4g35610          <-------      ------>ZmHOX2a(2)                <---------ZAT2           <---------At4g35610          --------    --------->ARR11(3)               <-----------RAV1(2)    --------->AtLEC2--------->ATERF1(1)    <---------ARR14(2)            ----------->HVH21     --------->ANAC58   --------->SPL7   ---------    --------->ARR14(2)     <---------At4g35610    --------->At4g35610      <---------ATERF1(1)  <----    ------->TEIL           <---------ZAT2--------->ALFIN1<---------ATHB12 <---------PCF5    <--------    <---------AGP1   ------>ZmHOX2a(1) --------->ZAT2   --------->ANAC58  --------->ARR14(2)<--------   tggatggatctagtgtttcaatcctagactgctggtctcacaggtggctcgaagctccaagcatgcagatggaacgggaccgcccatcagccaatttaat  22316000  Previous    Next  AGI:  At1g60560.1    Description:  SWIM zinc finger family protein. similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G13970.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76964.1); similar to hypothetical protein OsI_029781 [Oryza sativa (indica cultivar-group)] (GB:EAZ08549.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60858.1); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527) Range:  from: 22312237    to: 22315015    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g60570.1    Description:  kelch repeat-containing F-box family protein. Identical to Putative F-box/Kelch-repeat protein At1g60570 [Arabidopsis Thaliana] (GB:O22698); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G39550.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 22315501    to: 22316646    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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