Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            --------->AHL20(2)                                                          --------->YAB1                                                      <---------RVE1(1)                                                     <---------ARR11(3)                                               ---------->DOF2                                            --------->ZAT18<---------YAB1 --------->YAB1        <----     <---------ARR11(3)                     <---------ZAT18<---------TOE2(3)                 <xxxxxxx     <-----------ARR10                   <---------ANAC46 <---------AHL20(2)                <xxxxxxxx --------GT1                        <---------YAB1   --------->ARR11(3)  <-------TEIL     <---------YAB1   tactcagtatctcactagttattttttaaactataaatatgtttagtgcaaaagagatattaatattggtctaaattcataaataagaaattttcattta  22257700     --------->AHL20(2)     <---------AHL20(2)                                                  <---------YAB1   --------->AHL20(2)                                                   --------->AHL20(2) -------GT1           ---------->DOF2                       --------->MYB46(3)       <---------YAB1 xxxxxxxxxxxxxxxsmallRNA(si3)     ---------->DOF2      --------->ANAC55(2)    <-----------GT1 xxxxxxxxxxxxxxxsmallRNA(si3)  <---------WOX13(1)     <---------TOE2(3) <---------AHL20(2)      -----   cccatatatatatacgaattacccaaaagacagattgaaagacaagagttttcatttatgtaacaactgtagattaaaattcacattactattagtctat  22257800                                                                 <---------YAB1                     <------------CBF                <---------AHL20(2)                   <---------TOE2(3)          ------>ZmHOX2a(1)<---------AHL20(2)                   <---------YAB1            --------------->AGL15 --------->AHL20(2)             <---------YAB1                  --------->TOE2(3) --------->AHL20(2)----------->GT1          <---------AHL20(2)             <----------DOF2       <---------ICU4   <---------------AtSPL8          <---------YAB1              --------->ARR11(3)      --------->ICU4    <---------TOE2(3)       <---------AHL20(2)             <---------ARR11(3) --------->YAB1         --------->DAG2       --------->AHL20(2)            <---------CCA1(2)   --------->TOE2(3)      <---------TOE1(3)       --------->ARR11(3)            <---------GLK1(1)  ----------->GT1     --------->YAB1       --------->AHL20(1)            --------->GLK1(1) <---------TOE2(3)  ------------>CBF       <---------ARR11(3)      <---------ANAC46  ----------->TBP--------->AHL20(1)       <---------AHL20(1)      <---------ANAC58  <---------YAB1--------->ATHB51 --------->MYB59 ------>TBP--------->YAB1      <---------ANAC58  --------->AHL20(2)<---------AHL20(2)    --------->AHL20(2)   atatactaatatattataactaagattgaaatgccttggatatctttccttataaataatgttaattattttaatcaacaataaggtaaaaaaaaattca  22257900                                                                               <---------ANAC55(2)                               xxxxxxxxxxxxxxxx>smallRNA(i)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         ------------>CBF                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <-------GAMYB                                  --------->ANAC46                   <-----------RAV1(1)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                ------>ZmHOX2a(2)                         ------>MYB46(1)      --------->ANAC58               --------->GLK1(1)                        <---------MYB111(1)    --------->ANAC58               <------ZmHOX2a(2)                        <---------MYB46(2)     --------->ANAC46               <---------GLK1(1)           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->ANAC55(2)              --------->ARR11(3)   <---------ZAT14      <---------MYB59  <---------ARR11(3)     xxxxx              <---------AGP1 <---------ATHB12          --------->ANAC55(2)     --------->ANAC55(1)              <---------ARR11(3) >>>>>>>>>TAC1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxx          --------->CCA1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->REM1(1)       <---------ZAT14        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->ZAT14       <---------ZAT6<---------MYB52(1)   <----------DOF2 ------>MYB83   --------->ARR11(3) xxxxxxxxx   aaacaaatagagataagatctctgttggccaatcgagtgttcttctttctcgttctcacctaatcttacacctaaaatctcacgtaatctctgaactctc  22258000                                     <---------ANAC46                                     <---------ANAC58     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          <---------TOE1(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <---------ANAC58            xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <---------ANAC58           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <---------ANAC46         <---------TOE1(3)                                  --                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     xxxxx                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------MYB52(1)    <xxxxxxxxxxxxxxxxxxxxx                 <-------TEIL        <---------ANAC58   --------->TOE2(3)    --------->TOE2(3) <xxxxx             <---------YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       ----------->ARR10      <xxxxx         <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------TOE2(3)     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <------ZmHOX2a(1)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->ICU4    ---------->DOF2 xxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------YAB1  --------->YAB1<--- xxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ttggtacttaggactatgattcatttcgtagcttagtttgtgtggaagttagggttttcgttagaagtcatggttagaacctctatcaaaagcataggct  22258100                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                      --------->ARR14(1)                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------TGA1a                                            --------->ZAT14          --------->ARR11(1)                                            --------->ARR14(2)     <---------ATHB12                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->TGA1a                                         <---------ANAC58         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <------MYB83                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------TOE1(2)         <------MYB46(1)                 <---------ANAC58       <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------->LBD16     <----------DOF2       <---------ANAC46  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxx>smallRNA(si3)       <-----------------------TaNAC69(2)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xsmallRNA(si3)    <---------DAG2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------MYB46(3)  --------->ZAT14 <---------ARR14(2) xxxxxxxxxxxxxxxxsmallRNA(si3)   <-----------RAV1(1) <---------ZAT14 <---------GLK1(2)              x ------LBD16---------->DOF2    xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ARR14(2)           ---   cggggatagataggttaagcgctttaccagagcatttgttgtgtcgtatactctctgaactctccaccaaggattcggttcgcacgagtgttttgtctaa  22258200                           ------>ZmHOX2a(1)                         ----------------->AGL1                         ----------------->AGL2                   <---------ANAC55(2)                   --------->ANAC55(2)                        --------->GLK1(2)                   <---------ANAC55(1)                     <---------GLK1(2)                <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <---------ARR11(3)       <xxxxxxxxxxxxxxxx              ----------->GT1                            --------->LBD16           <---------WOX13(1)        --------->ARR11(3)<---------------AGL15         <---------HSFB2a(2)       -------------------        <---------ARR11(3)--------------->AGL15         --------->HSFB2a(2)      --------->ATHB12  <-       <---------GLK1(1) <-----------------AG         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        --       --------->GLK1(1) <-----------------AGL1      <-----------GT1  <----------DOF2           -----      <xxxxxxxxxxxxxxxxxsmallRNA(fl3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------WOX13(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <-------TEIL   <----- ------>ATHB12<---------MYB46(3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->GLK1(1)------   gcattggagaaatctttggttacatgttcctgttttggaattggaaaccagtgattttccagataatctggtctttagggagttcattgatagatttgtc  22258300                                                                                                   <x                                                                                             <-------GAMYB                                                                                         <---------bZIP60(2)                                                                                       xxxxxxxxxxxxxx                                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      ---------->DOF2                                            <---------YAB1      <xxxxxxxxxxxxxxx  ----------->HVH21                         <---------YAB1       --------->ICU4    ------>ZmHOX2a(2) xxxxsmallRNA(si3)                        --------->YAB1       --------->YAB1      xxxxxxxxxxxxxxxxxx -->WRI1                                 <---------YAB1       <---------YAB1    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------ARR14(2)                     <---------AHL20(2)     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxx ------->ARR14(2)                --------->AHL20(1)    ------>ZmHOX2a(1) <---------ANAC46<---------ANAC46 ---->ETT(1)                     <---------AHL20(1)    ===================================HOX2a_HOX2a ----------------WRI1            <---------ARR11(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------- ---->ID1           ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<-----------RAV1(1)<--------   ggatttgacaaagagatagacttaaagagtttcgatatattttatgatgttaatgtcctctggtatgatgattttctgtggatgatcgatgatgtggtta  22258400              ------>ZmHOX2a(2)    <---------ZAT6                                     ----------->GT1                        -------   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               --------->MYB59              <-------MYC3 xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      --------->MYB52(2)           ------->MYC3 xxxxxxx>smallRNA(si3)      <---------ATHB12           --------->MYB46(2)           xxxxxxxxxxxxxxxxx xxxxxsmallRNA(si3)<---------MYB46(3)        <---------TOE2(3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xx>smallRNA(si3)  <---------ICU4 --------->LBD16 --------->DAG2           <----------DOF2--------->ATHB12 xxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ANAC55(2)------------>MYB.PH3(2)xxxxxxxxxxxxxxxxxx>smallRNA(si3) -->GT1      <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  ---------->DOF2           <---------DAG2<xxxxxxxxxxx -MYB46(3)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->YAB1        <---------CCA1(2)  ----------->RAV1(1)   agcgtagagtttgtgatctaatggttaccaataacccgtatgttgttaatgaaaagttagttaaaatgcctatatccctttattcatgtgcaacattggt  22258500                 ---------->ID1           --------->GLK1(2)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                           xxxxx               <---------MYB46(3)   <-----------HVH21                                      <xxxxxxxxx               <-----------RAV1(1)  <-----------TGA1                                ----------->GT1    <-----------GT1              -------->P                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <-----------GT1               <---------At5g28300 <-----------GT1    xxxxxxxxxxxxxxxx>smallRNA(si3)  <---------AHL20(2)     --------->YAB1   --------->ARR14(2) <-----------HVH21    xxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------GLK1(2)--------->O2<xxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---->GT1   <----------DOF2<---------KAN4(1)   <---------MYB52(1)  <---------ARR11(3)    xxxxxxxxxxxx xxx>smallRNA(si3)     --------->ICU4   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------AHL20(2) <xxxx xxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->ARR11(3)<-------GAMYB  x   gaatttaaacctctcttttgttgccatgaataatctaccgtcagaatcggtttgtttacctcgtgtcaagaccttatatttacatggggttaaacttgat  22258600  Previous    Next  AGI:  At1g60400.1    Description:  F-box family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G60410.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 22258070    to: 22259463    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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