Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     <---------WOX13(1)                                                  <---------ANAC46                                         <---------ANAC58                ---------->DOF2                                         <---------ANAC58<---------AHL20(2)                      <---                                       <-----------GT1   --------->AHL20(2)                    ------                                   <----------DOF2<---------ANAC58 <------MYB83             <--------                                   <---------DAG2 <---------ANAC58 <------MYB46(1)       <---------ANAC58                          <---------ANAC58    <---------ANAC58  <---------ANAC58         <---------ANAC58   <---------AHL20(2)     <---------ANAC58    <---------ANAC58  <---------ANAC58   --------->GLK1(2)   tctatttagttttatctgaatttgtttttcttggtaactttttacttgccttgcttgatataaatagcttggtcttaaagaagagaatatagcgagcggc  22248200                                                                            ------>ZmHOX2a(2)                                                                        ------>ZmHOX2a(1)                                            ------>ZmHOX2a(2)     --------->ALFIN1                                           ====================================HOX2a_HOX2a                                           <------ZmHOX2a(2)    <---------ANAC46                                          --------->ARR14(2)    <---------ANAC58                                 <-----------HVH21              <---------ANAC58                                <------MYB46(1)               <------MYB83XXXXXXXXXXXXXXXXXXXX>MIR170      ----------->GT1           <------MYB83===================================HOX2a_HOX2a         <- ------SPL7                    --------->MYB59                <------MYB46(1)                      <- --->At4g35610    ------>ZmHOX2a(2)       <---------ARR14(2) <---------AtMYB61                ------- -At4g35610     --------->ARR11(3)--------->WRKY18(1)     <-----------RAV1(1)            --------->AHL20(2)   ttacgaactagaaaatttgatctagggttttattaggtcaaaccgatcggtttcacttatatgttggtgtgttcctgatcgaaccgttcaatataacaaa  22248300                                                                                                    -             ---------->DOF2                                          ------------>CBF             <-       --------->ARR11(3)                            --------->AHL20(1)                           ---       <---------ARR11(3)                            --------->ARR11(3)                         -----      --------->YAB1            <---------At4g35610  <---------AHL20(1)               <---------GLK1(1)   ---------->DOF2              --------->At4g35610  <---------ARR11(3)    <---------ARR11(3)  ------ --------ANAC58             <------ZmHOX2a(1)       ----------->TBP  <-----------GT1  --------->GLK1(1) --------ANAC58         <------ZmHOX2a(2)<------------CBF    ---------->DOF2    <---------LBD16<----- --->DOF2  <---------YAB1<-----------RAV1(2)    ------------>CBF  ----------->GT1 --------->LBD16<---   ggcttgaaagataatgaaagtctccgatcaggagagctctctgtattgcattcaatatatagccaaagttgttacaatatgttcagggatttccctagat  22248400        <---------ARR14(2)        --------->ARR14(2)        <---------ARR11(3)        --------->ARR11(3)       --------->GLK1(1)      <---------KAN4(2)                                             <------MYB46(1)      ---------->TaMYB80                --------->KAN4(2)           ----------->GT1 --------->LBD16                       <---------KAN4(1)            <---------MYB46(3) -------->ANAC46                       --------->KAN4(1)            <------MYB83 --------LBD16                         <---------HSFB2a(1)        <---------WOX13(1) ------>MYB52(1)                       --------->HSFB2a(1)       <------------CBF ---->CCA1(2)                         ---------->TaMYB80        --------->ATHB12 --->ARR14(2)                         <---------ARR14(2)       <---------YAB1             <---------ATHB12 ----GLK1(2)                          --------->ARR14(2)     <---------At4g35610 ---------->DOF2 ----TEIL                             <---------KAN4(2) <---------TOE2(3)     <----------DOF2  ------   tcacggagaatatccacagtatttccaactaatatttgagaatattctatctgttaataaggctactgattggttaatgcctttaaagccaaatcaaaca  22248500                           <------MYB83                           <---------DEAR3(2)                          --------->MYB59                         <-------TEIL                                   --------->CCA1(2)                     <---------TOE2(3)                            --------->TOE2(3)                  --------->ICU4                      --------->STY1(1) <-----------TBP                --------->WOX13(1) <---------ICU4 --------->ZAT18 --------->TOE1(3)              ------------>CBF    <------ZmHOX2a(2)   <---------STY1(1)--------->ARR11(3) --->YAB1     <------NtERF2<------MYB46(1)   --------->AHL20(2)   --------->TOE1(2) <---------CCA1(2)   gaattacacaaacctcggcaattagggttcggttcgatcagtactgaataaatgccctaggcttcaaaccttagatatatagtcgtctatctttctcctt  22248600                                                                    --------->ATHB12                                                                    --------->ATHB51                                                                    <---------ICU4                                               <-----------ARR10   --------->ICU4                                               --------->GLK1(2)   <---------YAB1                <------ZmHOX2a(1) <------ZmHOX2a(1)          <---------ARR11(3)                   <--             <-----------RAV1(2)  ====================================HOX2a_HOX2a              <-----             <---------LBD16------->TEIL----------->GT1   <---------WOX13(1)                 --------   --------->ANAC58        --------->MYB52(1) <---------GLK1(2)------>ZmHOX2a(2)     <---------ICU4   --------->ANAC46      <---------YAB1--------->DAG2  <---------YAB1        <-------TEIL    <-------   --------->ANAC58   --------->ICU4  ---------->DOF2  --------->LBD16      --------->CCA1(2)<-------   gttataagcaaaataccaggagacatcatgaacggaggagaaaagttagaatctatcccgattgatctcattattgagatacattcaagattaccagcgg  22248700                                                                                                  <--                                                                                                  ===                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                         <---------ZAT2                                                                                      <---------ANAC58                      --------->REM1(2)                                               --------->ANAC55(2)                      <-----------HVH21                            <---------At4g35610<---------ANAC55(2)                   <---------ANAC58                                <---------ZAT2     <---------ANAC46                   <---------ANAC46                                --------->ZAT2     <---------ANAC58 ---------HVH21    <---------ANAC58                           <---------At5g28300    <------NtERF2--- ----ZAT18        ------>NtERF2 --------->ALFIN1             <-----------GT1         ---------------- ->At4g35610   --------->At4g35610                 --------->ORA47(1)            --------->ZAT2   --- --LBD16   --------->ARR14(2) --------->CCA1(2)    ------>NtERF2--------->DEAR3(1)<-----------HVH21 --At4g35610   <---------At4g35610                --------->DEAR3(1)        <---------WRKY18(1) <----   agtcagtcgcaaggtttcgctgcgtgtcgaagctatgggggtctatgtttcgccgtccatatttcaccgagctgttcttgaccaggtcgcgtgctcgtcc  22248800 -------O2                --------->At5g28300 ================================MYC_MYB -------TGA1a            ------->GAMYB ------>TGA1a            --------->TOE2(3)                                             <----------DOF2 ------>bZIP60(2)        --------->TOE1(3)                                          <---------RAP2.6(3) ------>ANAC46          <-----------------AGL3                                     --------->RAP2.6(2) ------>ANAC58          ============================================================================= ------>O2            --------->MYB52(1)                              <---------AHL20(1) ------->TaNAC69(2)--------->ANAC46--------->At4g35610                --------->ARR11(3) ------>ANAC58   ----------->RAV1(1)     <---------At4g35610          <---------ARR11(3)         ---- -----ALFIN1  ------>ZmHOX2a(1)    <---------At4g35610          --------->YAB1  --------->GLK1(2)<---   acgtctcttattcgtcctccaacacaaccgtaaatggagcttcagcgtcttctcttcgcctcaaaatcagaatatatatgagaagccgtcttttgtagta  22248900                                     --------->ARR14(2)                                     <---------ARR11(3)                                     --------->ARR11(3)                             ------->PIF5                             <-------MYC3                             <-------MYC2                             ------->MYC2                                                           <                             <-------PIF5                                                          <-                             <-------MYC4                                                         ---               <---------ARR11(3)    <---------GLK1(2)                              <-------TEIL <---               --------->ARR11(3)    <---------ARR14(2)                       =======================      <---------------AGL15  ------->MYC3                                     ---------->DOF2    <---      --------------->AGL15 --------->ANAC58                                <---------YAB1       ----     ----------------->AGL3 --------->HSFB2a(1)                           --------->YAB1<---------ARR14(2)     ================================================================================MADS_MADS   <---  <---------GLK1(1)         --------->ANAC58                             <---------YAB1 --------->ARR14(2)  --------->GLK1(1)         <---------HSFB2a(1)                      --------------->AGL15       <--- ======================MADS_MADS   <---------TOE1(2)                 ================================ ----->At4g35610        --------->ANAC58  --------->YAB1             <---------------AGL15      <---- ------At4g35610        --------->ANAC58 <---------YAB1       ------>ZmHOX2a(2) --------->DAG2-------   gctgatttccacatgaagttctctgtaagcacgttcccagattttcatagttgctctggtttgatccatttctctatgatgaaaggcgcatatacagtgc  22249000                  --------->ANAC58                  --------->ANAC58        <-----------GT1     ----------------------->TaNAC69(2)     <---------ANAC55(2)     --------->ANAC55(2)                                         <---------HSFC1(2)   <---------ANAC46                                          --------->ANAC58 <---------MYB46(3)                          ----------->HVH21   --------->HSFB2a(1) ---------AtMYB61 --------->TGA1a      --------->TOE2(3)     --------->ANAC58 --------MYB52(1) <---------TGA1a      --------->TOE1(3)<---------------AtSPL8 ------>LBD16 --------->ANAC58         <---------MYB59  <---------------AtSPL3 ------DREB2C(2)  --------->ANAC46    ----------------->AG<---------SPL7 ===========================bZIP_DOF  ----------------->AGL1<-------TEIL ------ANAC46 --------->ANAC58       -------->P    <----------ID1--------->HSFC1(2) ----->ATERF1(2)  ============================MYC_MYB   --------->ANAC58                ----------->ARR10 ------DEAR3(1)<---------SPL7        ------>MYB46(1)<------ZmHOX2a(1)                   <---------YAB1 ------ATERF1(2) <---------LBD16     ------>MYB83 --------->ANAC58           <----------DOF2 =======================================================MADS_MADS<---------HSFB2a(1)   <---------KAN4(2) -----LBD16=================MYC_MYB ------>ZmHOX2a(1)   --------->ANAC58 <---------CCA1(2)  ------>ZmHOX2a(2) -->ALFIN1 ------->GAMYB           <---------MYB59--------->ANAC58  <-------TEIL    <---------ANAC46   cggtggtatgtaaccctcgcacgggacaatatgcggtcctacctaaactgacaaggacaaggtacgaaaattcgtatagctttgtagggtatgatccgat  22249100  Previous    Next  AGI:  At1g60370.1    Description:  F-box family protein. Identical to Putative F-box protein At1g60370 [Arabidopsis Thaliana] (GB:O80758); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G42430.1); similar to hypothetical protein OsI_028877 [Oryza sativa (indica cultivar-group)] (GB:EAZ07645.1); similar to hypothetical protein OsJ_028422 [Oryza sativa (japonica cultivar-group)] (GB:EAZ44939.1); similar to hypothetical protein OsJ_026829 [Oryza sativa (japonica cultivar-group)] (GB:EAZ43346.1); contains InterPro domain F-box associated type 3 (InterPro:IPR013187); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box ass Range:  from: 22248628    to: 22249479    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version