Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                --------->ANAC58              --------->ANAC58            ---------->DOF2       <---------ARR14(2)       --------->ARR14(2)          --------->AtMYB61       --------->GLK1(2)          --------->MYB46(3)      <---------GLK1(2)        --------->ZAT18  ----------->GT1            <---------ZAT18          ------>ZmHOX2a(1)      <---------ANAC58       < ------->CCA1(2)            <---------ZAT6            --------->LBD16        <---------ANAC58  ------   gagatggagaatctgaaagcatctaagttagtgtccaccatcaacttcacatcttcctgaatagtcacaataaactcaggcttgatgaacaaaaaactca  22227500                                                                             --------->TOE2(3)                                                                         --------->DOF5.7(2)                                                                         <---------MYB52(1)                                                                  <---------ARR11(3)            -----                                                                 <---------CCA1(2)              -----                                  ------->TEIL        <-----------HVH21 <-------GAMYB          ------ ---------REM1(1) --------->At4g35610                --------->ANAC46  --------->ANAC46 --------->At4g35610 --->YAB1----------->GT1     ---------->DOF2     --------->GLK1(1)--------->ARR11(3) <---------YAB1 <   taatgtagcaagagtaaattagcagagaagagaaagaaccttgtatttgtgatacccatcacatgttatatctccgttaccttggttattatctgcaatg  22227600                                                          <---------ANAC58                                                          --------->TGA1a                                <---------AHL20(2)        <---------O2      <---------TOE2(3)         --------->AHL20(2)        --------->O2 <---------ARR14(2)     --------->YAB1          --------->ATHB51             <---------TGA1a     <---------AHL20(2)      <--------ATHB1               <---------ANAC55(2)     --------->AHL20(2)      <--------HAHB4               <---------ANAC58   --------->AHL20(2)        <---------ICU4               <---------ANAC46 <-----------HVH21   <---------YAB1            --------->YAB1               --------->ANAC55(2)   <---------AHL20(2)       <---------ATHB12        <---------ARR11(3) <---------ARR11(3)  --------->TOE2(3)         --------->AHL20(2)  ---------->DOF2        --------->ARR14(2)  --------->YAB1            --------->ICU4      ====================bZIP_DOF    --------->ANAC46 ---->TOE2(3)               <---------ATHB51  --------->ANAC58         <-----------ARR10 ---->YAB1                --------->YAB1      --------->ANAC58  ----------->HVH21 ----->GT1               --------->ZAT6----------->GT1    <---------ANAC55(1)  <---------HSFB2a(2)<-- ---------YAB1     --------->ZAT6<---------AHL20(2) --------->ARR11(3) --------->GLK1(2)          <--   ttaatattaatatttgttcaaacactaacaataattaaatgttgaaaaacgaaagctcttacgtgagtgacaaaatctgtcccagacactaggtttcctt  22227700            --------->At4g35610            <---------At4g35610          --------->MYB46(3)        ----------->RAV1(1)      --------->LBD16     --------->ANAC58          <---------RVE1(1)     --------->ANAC58         <---------ARR11(3)                           --------->AHL20(2)     --------->ANAC55(2)      --------->ARR11(3)                           <---------AHL20(1)     <---------HSFB2a(2) <-----------HVH21                                 --------->AHL20(1)     --------->HSFB2a(2)<----------DOF2                                    <---------AHL20(2)     --------->ANAC46<---------ALFIN1   --------->TOE2(3)             --------->ARR11(3)    <---------LBD16 ----------------->AGL3                            <---------ARR11(3) -------ANAC58      ----------------->AGL2                       <-------TEIL                    ---- -------ANAC58   ------>ZmHOX2a(1) <---------AHL20(2)           --------->CCA1(2)   -----------------   ccgtcttccgcaacagctccttcccactttcagatattaaaacctttgtttcagttctgttcgaagattcaagataataaattgattccaaacctgataa  22227800                                                                          --------->ANAC58                      ------->TEIL                                  --------->LBD16              ---------->DOF2                                      --------->LBD16  ----------->GT1           <------ZmHOX2a(2)                                      <---------HSFB2a(2)           ===========================HOX2a_HOX2a                 <---------LBD16   --------->ANAC58           --------->CCA1(2)                                      --------->HSFB2a(2)          --------->ARR14(2)                            --------->At4g35610   ---------->DOF2          <---------ARR14(2)                <---------At4g35610  <---------LBD16--------->ANAC58          <---------ARR11(3)   <------ZmHOX2a(1)       <---------DEAR3(1) --------->ANAC58  ---------    --------->ALFIN1  <---------ARR14(2)    --------->At4g35610<---------ARR14(2)   --------->ANAC58 ----->At4g35610      --------->ARR14(2) <---------At4g35610  <---------GLK1(1) --------->ANAC58  --- >AGL1    --------->ARR11(3)<-----------RAV1(2)      <-----------HVH21  ---------->DOF2     ---------   gcagaagtggaagatccaaagacgaatccctcaggaaaatcacatctgctgaaaacgtcgctgcatttcccggagaaagcaaaagcaagaaaaatggtaa  22227900                                                         <---------ANAC58                                                         <---------ANAC46                                                    <------------CBF                                                   <---------ICU4                                                   -------->ATHB1                                                   --------->ATHB12                                                   --------->ATHB51                                                  --------->ICU4                                                <---------------AGL15                                                --------------->AGL15                <---------ANAC55(2)                                               <-----------------AGL1                <---------ANAC58                                               ----------------->AGL2                <---------ANAC58                                               <-----------------AGL3                --------->ANAC55(2)                                               <-----------------AGL2              <-----------GT1                                               ------------>ATHB5              --------->AHL20(2)                                           <---------ANAC58                    <---------AHL20(2)     ---------->DOF2              <-----------GT1 <---------YAB1               --------->AHL20(1) -->GT1                 <-----------GT1<----------DOF2   <---------ANAC58  --------->AHL20(2) ------>YAB1          *TSS   <----------DOF2   ----------------->AGL3      <---------AHL20(2) >YAB1     <----------DOF2   <---------DAG2<---------ANAC58 <-----------HVH21  <---------AHL20(1)   tcagagcaaaagtcttttccattttttcacactttttctctcttttcgttccattattggcttgtcagaacttagaattaataaattacgagtctctcgc  22228000                                                                         ------->MYC2                                                                         ------->PIF5                                                                         <-------PIF5                                                                         <-------MYC4                                                                         ------->MYC4                                                                         ------->MYC3           ------>MYB83                                                  <-------MYC2           ------>MYB46(1)                                              --------->TGA1a         <---------MYB111(1)                                            --------->O2         ------->PIF5                                                   <---------TGA1a           <--         <-------PIF5                                               <---------At5g28300  <-----------GT1         <---------MYB55(2)                                =======================bZIP_DOF        ---         --------->MYB46(3)                                <---------DAG2<-------MYC3 <---------ICU4        --------->ZAT2                                  <---------ALFIN1<---------O2 ------->TEIL<---        ----------->RAV1(2)                            <---------ZAT18  <---------ANAC55(2)      ----        --------->At4g35610                   ====================================bZIP_DOF       ====      <---------ALFIN1                        ---------->DOF2      <-----------GT1--------->ICU4 ----    --------->SPL7   <---------ZAT6       ---------->DOF2  <----------DOF2--------->ALFIN1       ----  --------->ZAT14--------->ZAT14          ========================================bZIP_DOF       ====  <---------ZAT14<---------ZAT14    <------ZmHOX2a(1)  --------->ZAT18  --------->ANAC55(2)      <---   tcactgtaccacctgcccctccagtgttatttctgtgaggatgaaaaagaaagatggtccacttttgaattaccacgtgttgaaatgaatattacgcttc  22228100                                                                                   ----------->GT1                                                                             <---------TOE2(2)                                                                             <---------TOE1(2)                                                                            <---------------AGL15                                                                            =========================                                                                            ------>ZmHOX2a(1)                --------->ARR14(2)                                          --------------->AGL15                <---------ARR14(2)                                       <---------YAB1     ----------->GT1                                               --------->ARR11(3) -------------AGL15           <---------ZAT14                      <---------AHL20(2) ------------>AGL15           --------->ZAT14                      <---------ARR11(3) --------------AGL2           --------->ZAT18                      --------->AHL20(2) ------------->AGL2           <---------ZAT18                      --------->AHL20(1)          <----- ===========================================================================================MADS_MADS ------------->AG            <---------ZAT6                        <---------AHL20(1)    <---------ICU4 ------------->AGL3         --------------->AtSPL8                --------->AHL20(2)    --------->ICU4 ==================================================================================================== --------------AGL3         <---------------AtSPL8         ----------->GT1 ----------------->AGL2   ccacaaatagaaatatcaaatatgcatagtagtgtactactatccatttttgttttggggtttgaaaaatatattatcctagatttagtaattagtacta  22228200               <---------YAB1              <---------AHL20(1)              --------->ARR11(3)                                                                    <              --------->AHL20(1)                                                                    -              <---------ARR11(3)                                                                   --             --------->RVE1(1)                                                                     <-             --------->CCA1(1)                                                                  -----    <---------ZAT6                                                                             <-----    ----------->GT1                     --------->GLK1(1)                                  --------->AHL20(2)  <---------ANAC46       --------->GLK1(1)                                                <---------YAB1 ==========MADS_MADS     --------->At4g35610    --------->DAG2                         <---------YAB1 ----------AGL15 <----------DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <---------AHL20(2) ==========MADS_MADS     <---------At4g35610   ---------->DOF2               <-----------GT1<--------   tatgaagtgtaaaaaatatctttgggcatctccatcaaggagaaacccaaaaagtttttcaaacaaacaaattagtattttactaaatttttattatatg  22228300                                                             --------->REM1(2)                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                          <---------ANAC58                                                          <---------ANAC58                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                     --------->ATHB12                                                     --------->YAB1                                                     <---------ICU4                                                     -------->HAHB4      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                    <---------ATHB12  --------->ARR11(3)                                                    --------->ICU4    <---------ARR11(3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                    <---------YAB1   --------->RVE1(1)                                                   xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                              xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------AHL20(2)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <---------YAB1                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxx ---------AHL20(2)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->TGA1a -------->AHL20(2)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <---------TGA1a ------->AHL20(2)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <---------O2 --------AHL20(2)   <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->O2 ------>GT1   <---------TOE2(3)        <------ZmHOX2a(1)  <---------ANAC46            xxxxxxxxxxxxxxx ----YAB1  <---------AHL20(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           =============== -AHL20(2) --------->AHL20(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           xxxxxxxxxxxxxxxx   attaaatttttattttaatgaaaaaattgaaccaattgagaggagagaaatgtaatgatggcttgtagagaatatctcatagtttctcacttgagaaact  22228400  Previous    Next  AGI:  At1g60270.1    Description:  pseudogene, glycosyl hydrolase family 1, contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to hydroxyisourate hydrolase (GI:19569603) (Glycine max); blastp match of 57% identity and 2.8e-127 P-value to GP|12746303|gb|AAK07429.1|AF321287_1|AF321287 beta-glucosidase {Musa acuminata} Range:  from: 22225391    to: 22227922    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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