Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                   <-                                                                                                  ===                                                                                                  ===                              <---------ANAC46                                  <---------MYB46(3)---            <------ZmHOX2a(1) <---------ANAC55(2)                            <---------MYB46(3)  <---         <------ZmHOX2a(1)    --------->ANAC55(2)                           <---------ANAC46     ====      ======================RAV--------->LBD16                             <---------At4g35610   ====      <-----------RAV1(2)     <---------LBD16                              <------NtERF2        <----     <------NtERF2           <---------LBD16                             <---------RAP2.3(3)    <----    ----------->RAV1(1)   <---------GLK1(1)                              <---------DEAR3(1)     -----    ------>NtERF2 <---------ALFIN1                                      <---------ZAT2          ----- -------->ANAC58  --------->REM1(1)      <---------MYB52(1) <---------ARR11(3) <--------P       <---- -------->ANAC58----------->RAV1(1)--------->GLK1(1)        --------->ARR11(3)<-------GAMYB     ----- ---NtERF2--------->ALFIN1--------->GLK1(1)             ---------->DOF2 --------->ZAT2        -------   gcatggcaccaggaggagcaacaccatgaattccgggataaccattagccataggctggaaaggtctcataccaggctgcggttgatactgaggcataga  22208600                                                                                   <------NtERF2                                                                                  <---------MYB46(3)                                                                                  --------->LBD16                                                                                  ------>NtERF2                                                                                 <---------ANAC46                                                                                --------->ATERF1(1)                                                                               <---------DEAR4(2)                                                                               <---------RRTF1(1)                                                                               ------>NtERF2                                                                               <---------RAP2.3(1)                                                                               <---------ERF1                                                                               <---------RAP2.6(1)                                                                               <---------ORA47(2)                                                                               <---------ATERF1(1)                                                                              <---------RAP2.3(3)                                                                              <---------RRTF1(3)                                                                              <---------RAP2.3(2)                                                                              <---------DREB2C(2)                                                                              <---------DEAR3(1)                                                                              <---------RRTF1(2)                                                                              <---------ATERF1(2)          --------->GLK1(1)                                                   <---------ANAC46         <---------ARR14(2)                                                   --------->ATERF1(2)         --------->ARR14(2)                                                   <---------ANAC58        <------ZmHOX2a(1)                                                     <---------ANAC58     <------ZmHOX2a(1)                                                       <---------ABI4(1) ----->ZmHOX2a(1)                                                            --------->ATERF1(1) --------LBD16                                                              <---------ATERF1(1) ===========HOX2a_HOX2a                                                     <---------ERF1 ==============HOX2a_HOX2a                        --------->At4g35610   <---------AtMYB61 --->ZmHOX2a(2)                                   <---------At4g35610   --------->ALFIN1 ---ZmHOX2a(2)                                  --------->ZAT14      <---------AtMYB61    <------MYB83 ===========HOX2a_HOX2a                         --------->ZAT18      --------->ALFIN1    <---------AtMYB61 ==============HOX2a_HOX2a                      <---------ZAT14 --------->ANAC58<------NtERF2 -----ARR11(3)                            ------->GAMYB         --------->ANAC58<---------LBD16 -----GLK1(2)                          --------->MYB52(1)      --------->SPL7<------NtERF2<------MYB46(1) ---->ARR11(3)    <---------ZAT2    --------->ANAC46         ----------->HVH21<---------RAP2.6(2) ---->AGP1<---------GLK1(1)         --------->ANAC58        --------->LBD16--------->ALFIN1 --------- -----ARR14(2)    --------->ZAT2    --------->ANAC58       <---------LBD16--------->ATERF1(1) <------NtERF2 ---->ARR14(2)   --------->AGP1  <---------ARR14(2)       <---------LBD16<---------MYB46(3) <-------- ---->ARR10    --------->LBD16   --------->ARR14(2)      --------->MYB52(1)<---------DEAR3(1)<-------   tcctggaggaggaactccagagctagggttttgaaaattcgcaacgggagtgaactgcataccgggacggaatggtggtggcggcgggagattggtgggg  22208700                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                           <------NtERF2                                                                                           <---------ABI4(1)                                                                                           <-------GAMYB                                                                                          <---------MYB46(3)                                                                                         <---------AtMYB61                                                                                         <---------ANAC46                                                                                         <---------DREB2C(2)                                                                                         --------->ALFIN1                                                                                         <---------DEAR3(1)                                                                                        --------->ATERF1(1)                                                                                        <------NtERF2                                                                                        <---------ABI4(1)                                                                                       <---------ORA47(2)                                                                                       <---------RAP2.3(1)                                                                                       <---------DEAR4(2)                                                                                       <---------RRTF1(1)                                                                                      <---------ATERF1(2)                                                                                      <---------RRTF1(3)                                                                       <---------ANAC46<---------ATERF1(1)                                                                       <---------ANAC58<---------ERF1                                                                       <---------ANAC58------>NtERF2                                                                    <--------P        <---------DREB2C(2)             <---------At4g35610                                   <-------GAMYB      <---------RRTF1(2)             --------->At4g35610                                   <---------ANAC58   --------->ALFIN1     --------->ZAT2                                                <---------ANAC58   <---------DEAR3(1)     --------->STY1(2)   <------ZmHOX2a(1)  --------->ALFIN1      <---------MYB46(3)  <---------RAP2.3(3)     <---------ZAT2  --------->LBD16      --------->ZAT2          --------->MYB55(2)  <---------RAP2.6(2)     <---------STY1(2)<------NtERF2     <-----------RAV1(2)     <---------MYB52(1)    <---------RAP2.3(2)   --------->ZAT18 <---------LBD16   ------>NtERF2        ----------->HVH21           --------->ATERF1(2) >ALFIN1    --------->GLK1(2)        <------NtERF2     <------ZmHOX2a(1)   <-----------RAV1(1) <----- -ANAC46  <------ZmHOX2a(1)     --------->DAG2 <---------ARR14(2)<---------AtMYB61   --------->ATERF1(1) --MYB46(3)<---------GLK1(2)   ---------->DOF2 --------->TCP20<---------MYB46(3)     <---------ABI4(1)   agaagcgagctaggaatctgagccggaggagcataaggcggaccaggtggaaccagaggagcgactggtggttgcgaatgttgttgaggcggcggtggtg  22208800                                                                                 <------NtERF2                                                                                <------NtERF2                                                                                --------->LBD16                                                                              <---------LBD16                                                                              <---------ANAC46                                                                           --------->ALFIN1                                                                           ----------->HVH21                                                                          <-----------HVH21                                                                          --------->LBD16         <--                                                                          ------->PIF5           ----                                                                          <-------PIF5          <----                                                                         <---------O2         <------                                                                         <---------TGA1a    <-------TEIL                                                                         --------->O2     <---------ARR14(2)       <---------ARR14(2)                                                --------->TGA1a  --------->ARR14(2)      <------ZmHOX2a(1)                                              ------>ZmHOX2a(2)    <---------GLK1(2)      --------->ATHB12                        --------->GLK1(2)     --------->GLK1(1)     --------->ARR11(1)    <---------TOE1(3)                        <---------ARR14(2)     <---------ATERF1(1)  --------->HSFB2a(1) -AtMYB61                                    <---------GLK1(2)      <---------GLK1(1)    <---------HSFC1(2) >ALFIN1       <XXXXXXXXXXXXXXXXXXXXMIR832-3P--------->ARR14(2)     <------ZmHOX2a(2)    --------->HSFC1(2) -DEAR3(1)   --------->ARR14(2)            <---------ZAT18         <---------ARR14(2)    <---------HSFB2a(1) ----ZAT6    <---------ARR14(2)        --------->ALFIN1            --------->ARR14(2)   ----------->ARR10   ttagtgaaggattgggatttggattgggaattgaaatcggagtagtggattctggtttctgtgaattgggatcccccgtggccggagaagaagattcgtc  22208900                                                              <---------ARR11(3)                                                      --------->GLK1(2)                                                      --------->ARR14(2)                                                      ------->TEIL   --------->ZAT18                                                      <---------ARR14(2)                                                      <---------ARR11(1)                           <-                                                      <-----------ARR10      <---------GLK1(1) ------                                                  --------->ANAC46   <---------ZAT18           <-----                                             <---------bZIP60(1)  <---------ANAC58             <-----                      <----------DOF2        --------->bZIP60(1)  <---------ANAC58            ------- ----NtERF2        --------->ANAC58   <---------YAB1 <---------ARR14(1)<---------ANAC46 ------------>CBF -->NtERF2         --------->ANAC58   --------->ICU4 *TSS ---------->DOF2<---------HSFB2a(2) -------- -----DEAR3(1)   <-----------------AGL1  <---------WOX13(1)   <---------GLK1(2)    <---------GLK1(2) -----HVH21 <---------MYB46(3)<---------ATHB12 <---------ZAT14--------->ARR11(3)--------->YAB1<------   ggccatgggagttttggttacaagctttggcaatgaagtaatgaatgacttcaccgaatctaaagattttgtgccctagaaatcagaaactccaatttta  22209000                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                -----    <----------DOF2                                                            <----------DOF2  ===== ----------GT1                                <----------DOF2        --------->TOE2(3)          <---- --->AHL20(2)                                <---------ANAC58      --------->ARR11(3)           ----- ----YAB1                                    <---------ANAC58      <---------ARR11(3)           <---- ----AHL20(2)                              <---------ARR11(3)      --------->GLK1(2)            ----- -->AHL20(2)                          ------------>CBF     <----------ID1--------->ANAC55(2)    <---- ->YAB1                              <-----------GT1       --------->ANAC46    ====================== ---AHL20(2)                    ---------->DOF2        <----------DOF2   <---------ANAC55(2)    -----   attactctttatctgtgtgtgtgtgtgtgtgtgtcaaagttacaatttctttcccttctttacgacaaaaatcttaagtaacttttgtttattgttacac  22209100        --------->AHL20(2)        <---------AHL20(2)     <---------AHL20(2)     --------->AHL20(1)     --------->AHL20(2)     <---------AHL20(1)    <---------ATHB12    --------->AHL20(2) ---->ABF1 --->MYC2 ----MYC3 --->MYC4<---------ICU4 ----MYC4--------->ATHB51 --->MYC3-------->ATHB1 ----MYC2--------->ATHB12 ---->ANAC55(2) ============================================bZIP_DOF  --------->ANAC58            <---------AHL20(2) -----ANAC55(2)                                        --------->ANAC58            <---------YAB1---- ---->O2--------->ICU4                                 --------->ANAC46           <---------AHL20(1) -----O2<---------ATHB51                        <---------YAB1                    --------->AHL20(2) ---->TGA1a            >>>>>>>>>>>>>>>>>LFY   --------->YAB1               <------NtERF2         <--- -----TGA1a         <---------ICU4           <---------YAB1                ----------->GT1      ----- =====bZIP_DOF     <---------YAB1           <-----------GT1    --------->YAB1     --------->AHL20(1) ---->ANAC46       --------->ICU4 ---------->DOF2  <-----------GT1        <---------HSFB2a(2)   -----   gtgtcaataaattattggctcattattccattgtttcaaagtcaattttcattatacaagacaaataataggcagtcgggaaaatataattcatctatac  22209200                                      ------->GAMYB                                     <---------MYB52(2)        <---------AHL20(2)                                     <------------MYB.PH3(2) <---------YAB1                                     <---------MYB111(2)   --------->AHL20(2)                                     --------->MYB46(3)    <---------AHL20(2)                                     <---------MYB55(2)   --------->AHL20(2)                       --                                    ------>MYB83          <---------AHL20(2)                       --                                    ------>MYB46(1)       --------->AHL20(1)                     <---           <---------AHL20(2)      ----------->RAV1(1)    <---------AHL20(1)   <---------ANAC58 -----          --------->AHL20(2)   >>>>>>>>>>WRKY43       <---------AHL20(2)       <---------ANAC58<-----    ----------->GT1            >>>>>>>>>>WRKY26  --------->AHL20(2)     <---------YAB1         ------  ---------->DOF2        <----------DOF2         <---------AHL20(2)     <---------AHL20(2)     <----- ----------->AGL15      <---------ANAC58         <---------ARR11(3)  <---------ARR11(3)        ------ ------------AGL15      <---------ANAC58         --------->ARR11(3)  --------->ARR11(3)       <------ ---->TOE2(3)  --------->YAB1<---------WOX13(1)  --------->AHL20(1) --------->YAB1            <------ ---->ANAC55(2)----------->GT1 >>>>>>>>>>WRKY38  <---------AHL20(1)<---------YAB1             -------   ttaataaagaaaattaatggtaatttgcttaattgaccaacaaactcttaatatattcaatttatttttatgatattattgtcttggtacttagtaatca  22209300      <---------ARR11(3)      <---------AHL20(1)  <---------ICU4  --------->YAB1 <---------ATHB12 ------->YAB1              --------->TOE2(3) ------->WOX13(1)        <---------YAB1                              --------->ARR11(3) ------YAB1            --------->YAB1               <---------AHL20(1)             --------->AHL20(2) ---->TOE2(3)         <---------ATHB12           --------->YAB1      <---------GLK1(2) ---HAHB4           --------->WOX13(1)           --------->AHL20(2)  <---------ARR14(2) --->YAB1        --------->ANAC46              --------->AHL20(2)    <---------ARR11(3)<---------AHL20(2) ----ICU4        --------->ANAC58           --------->AHL20(2)       --------->ARR14(2)--------->AHL20(2) --->ATHB12      --------->ANAC58        --------->YAB1         <------ZmHOX2a(2)  <---------AHL20(2) ---ATHB12<---------------AGL15         <---------YAB1   <---------AHL20(2)<-----------GT1<---------YAB1 ---YAB1  --------------->AGL15         ----------->GT1 <---------YAB1  <---------ANAC55(2)     ----- -->ICU4<XXXXXXXXXXXXXXXXXXXXXMIR828 --------->ICU4 --------->AHL20(1)  --------->ANAC55(2) ---------   ttaatcaatatacttatttaagcaatcatccttgaaaacatgatgataaaataatatttttaatggatcaagatacttaaccagtttaatttataaaaga  22209400                                                 --------->ATHB12                                               <--------P                                               <---------WOX13(1)                   --------->ANAC58           <-------GAMYB                   --------->ANAC46          --------->MYB55(2)             <---------ARR14(2)                   --------->ANAC58          <---------MYB46(3)             --------->ARR14(2)       <---------ANAC58                     <---------AtMYB61         ----------->HVH21     <--------     <-----------GT1<---------ATHB12     <---------AtMYB61    <----------DOF2               <--------     <---------AHL20(2)                <----------DOF2       <---------ANAC58               <-------- ----->DOF2     ------>ZmHOX2a(2)   <---------ARR11(3)       <---------ANAC58  <---------YAB1 ->DOF2<---------ANAC58             --------->ARR11(3)   <----------DOF2    --------->GLK1(2) -------   aagaaatttacttgttgatccactcaatttagccttgaaatctttggtggttgattagcctttgctttggaagtgacaaatctgattcaatttggggtga  22209500  Previous    Next  AGI:  At1g60200.1    Description:  splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein. similar to hypothetical protein OsI_028229 [Oryza sativa (indica cultivar-group)] (GB:EAZ06997.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Splicing factor PWI; (InterPro:IPR002483); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 22204398    to: 22208953    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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