Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     <-----------GT1                                                                                   <---------ICU4                       --------->YAB1                     --------->LBD16          xxxxxxxxxxxxxxxxxx                       <---------AtLEC2             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <---------YAB1   <-----------GT1           --------->ANAC58                    xxxxxxxxxxxxxxxxxx  --------->YAB1 <----------DOF2               --------->ANAC46                --------->AHL20(2)   < <---------YAB1  <---------DAG2            --------->YAB1 --------->At4g35610  <---------AHL20(2)   < -----------GT1 <---------ANAC58    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------MYB52(1)    - ------->YAB1   <---------ANAC58--------->YAB1 --------->ANAC58             ----------->GT1   <------   attatcatttttgatattgcttttttcatgactataacaattcgattataagcatcaaaccgcagaaatatttgatagcagttaattactacaaaattac  22196000                                                                                               <-----                                                                                               ------                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                           <xxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                    <xxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                --------->ALFIN1                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             xxxxxxxxxxxxxxxx>smallRNA(i)                                                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             xxxxxxxxxxxxxxx>smallRNA(le3)                                                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                                                             <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                            xxxxxxxxxxxxxxxx>smallRNA(si3)                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                            xxxxxxxxxxxxxxxx>smallRNA(se3)                                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                            xxxxxxxxxxxxxxxx>smallRNA(s)                                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                                                            <---------ANAC46<--------                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                           xxxxxxxxxxxxxxxx>smallRNA(i)                                                                           xxxxxxxxxxxxxxxx>smallRNA(s)                                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                                                          xxxxxxxxxxxxxxxx>smallRNA(s)             <--------ATHB1                                              ----------->HVH21-----------             --------->ATHB12                                          --------->ANAC55(2)xxxxxxxxxxx            --------->ICU4         <---------AHL20(2)                  xxxxxxxxxxxxxxxx>smallRNA(s)            <---------ATHB12  <---------YAB1           <---------AHL20(2)xxxxxxxxxxxxxxxx>smallRNA(s)     <---------AHL20(2)     --------->YAB1            --------->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->AHL20(2)     <---------ARR11(3)        --------->AHL20(1)   <---------ANAC55(2)xxxxxxxxxxx xxxx>smallRNA(si3)     --------->AHL20(1)        <---------AHL20(1)   --------->ANAC46 <xxxxxxxxxxxx xxxx>smallRNA(le3)     <---------AHL20(1)        --------->AHL20(2)  <---------LBD16xxxxxxxxxxxxxxxx ---------ARR11(3)      --------->ARR11(3)        <---------AHL20(2)  xxxxxxxxxxxxxxxx>smallRNA(i) ---------AHL20(1)     --------->AHL20(2)      --------->YAB1        <-----------GT1xxxxxxxxxxxxxxxxx -------->AHL20(1) <---------YAB1  --------->AHL20(2) <---------AHL20(2) <---------SPL7 <------ZmHOX2a(1) -----GT1   <---------YAB1 <---------YAB1   --------->TOE2(3)     <----------DOF2<xxxxxxxxxxxxxxxxsmallRNA(s)   aaaatatttatacaatgatttataaatatatcataaataaaatcaacattaataaaataaataggtttcttttacgggacgggtttggcaggacgttact  22196100   <---------YAB1 <-----------GT1 --------->YAB1 ----ANAC55(2) --->ANAC55(2) xxxxxxxxsmallRNA(s) xxxxxxxxsmallRNA(i) xxxxxxxsmallRNA(i) xxxxxxxxxxxsmallRNA(i2) xxxxsmallRNA(s) xxxxxxxxsmallRNA(fl3) xxxxxxxxsmallRNA(le3) xxxxxxx>smallRNA(fl3) xxxxxxx>smallRNA(le3) xxxxxxxxsmallRNA(i2) xxsmallRNA(s) xxxxxxx>smallRNA(si3) xxxxxxxxsmallRNA(se3) xxxxxxxx>smallRNA(si3) xxxxxxxxsmallRNA(si3) xxxxxx>smallRNA(se3) xxxxxxx>smallRNA(se3) xsmallRNA(i) xsmallRNA(s) xxxxx>smallRNA(le3) xxxxxxxxsmallRNA(se3) xxx>smallRNA(se3) xxxxxxsmallRNA(si3) xxxxx>smallRNA(si3) xxxxxxsmallRNA(le3) xxxxxxxsmallRNA(s2) xxxxxxxsmallRNA(i2) xxxxsmallRNA(le3) xxxxxxxsmallRNA(i2) xxxx>smallRNA(i2) xxxxxxsmallRNA(le3) xxxxx>smallRNA(le3) xxxxxsmallRNA(le3) xxxx>smallRNA(si3) xxxxx>smallRNA(si3) xxxxxsmallRNA(si3) xxxxxxsmallRNA(si3) xxxx>smallRNA(le3) xxxxxxsmallRNA(se3) xxxx>smallRNA(se3) xxxxxsmallRNA(le3) x>smallRNA(si3) xxxxsmallRNA(le3) xxxxsmallRNA(si3) xxxxxsmallRNA(si3) xxx>smallRNA(se3) xxxxsmallRNA(si3) xxx>smallRNA(se3) xxxxsmallRNA(se3) xxxsmallRNA(l2) xxxxsmallRNA(i2) xxxxsmallRNA(s2) xxxxsmallRNA(fl3) x>smallRNA(se3) xxxsmallRNA(se3) xxxxsmallRNA(le3) xx>smallRNA(se3) x>smallRNA(se3) xsmallRNA(se3) xx>smallRNA(si3) x>smallRNA(le3) xx>smallRNA(le3) x>smallRNA(fl3)                                                                                   -- xx>smallRNA(fl3)                                                                                 <xx >smallRNA(fl3)                                                                                  ---- xxsmallRNA(se3)                                                                            <-------- xxsmallRNA(le3)                                                                            <-------- xsmallRNA(le3)             --------->AHL20(2)                                           <---------ANAC46 xxsmallRNA(fl3)            <---------AHL20(1)                              <---------AHL20(2)   <--- xsmallRNA(si3)           --------->AHL20(1)                                --------->AHL20(2)<xxxxxx xsmallRNA(s2)--------->TOE1(3)                                             --------->AHL20(1)------- xsmallRNA(l2)<----------DOF2                                           --------->AHL20(2)  --------- xsmallRNA(le3)           <---------ARR11(3)                         <---------AHL20(2) <---------DEAR3(1) >smallRNA(fl3)  --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) <---------AHL20(2) --------->ALFIN1 -MYB52(1)    --------->TOE2(3)<---------AHL20(2)                    --------->AHL20(2)------>NtERF2 >GT1  --------->YAB1  --------->AHL20(2)                       <---------AHL20(1)     --------->LBD16 xxxxxxxxxxxx>smallRNA(si3) --------->AHL20(1)                  --------->AHL20(1)    --------->ANAC46 xxxxxxxxxxxx>smallRNA(i2)--------->ARR11(3)                   <---------AHL20(2)<-----------GT1<---- xxxxxxxxxxxsmallRNA(si3) <---------AHL20(1)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------LBD16 xxxxx>smallRNA(si3)  --------->YAB1       <-------TEIL  --------->AHL20(2)--------->AHL20(2) ------- xxxxxx>smallRNA(i2) --------->AHL20(2)   --------->CCA1(2)--------->AHL20(2)   <---------ICU4<xxxxxx   taataacaattgtaaactttaaaataaaaatattttatatatagatacaatttgcaaatttttatatatattaaaaaattaattatccccgcggtgtacc  22196200                                                                          --------->ATHB51                                                                          <---------ICU4                                                                          --------->AHL20(2)                                                                          <---------AHL20(2)                                                                         <---------YAB1                                                                       --------->YAB1    <---------AHL20(2)                                                <---------YAB1    --------->AHL20(2)                                                --------->AHL20(2) ------->LBD16                                                        <---------AHL20(2) xxxxxxxxxxxxxxsmallRNA(s)                                           <---------AHL20(1) ----->LBD16                                                         --------->AHL20(1) -SPL7                                                   <----------DOF2 --------->ICU4 -ZAT14                                                 <---------------AGL15 ------LBD16         --------->AHL20(2)                 --------------->AGL15 xxxxxxxxxxxxxxxxxsmallRNA(si3)                        ----------------->AGL3 >TEIL --------->GLK1(2)                       ----------->GT1       --------->AHL20(2) >ZAT14--------->ARR11(3)                  ---------->DOF2    --------->HSFB2a(2) -----ANAC46   ----------->HVH21         --------->TOE2(3)    <---------HSFB2a(2) -->SPL7     <---------ZAT6       --------->ANAC58     ----------------->AGL2                  ------ xxxxxxxxxxsmallRNA(i)            --------->ANAC58<-----------GT1   --------->YAB1  ---------->DOF2--   gcggattaaaatctagtgtgacataaaatagaactgaagcaaacctaaagagtaacttccttttgtagaaatataattatttcaacaaaagattgtatag  22196300                                                                                      --------->ATERF1(1)                                                                                      <---------ZAT2                                                                                      <------NtERF2                                                                                     --------->LBD16                                                                                     ------>NtERF2             ----------->GT1                                                         <---------ATERF1(1)            --------->ANAC58                                                         <---------RAP2.6(3)      <---------AHL20(2)                                                            --------->ATERF1(2)  <---------CCA1(1)                                                                 <---------ATERF1(2)  <---------RVE1(1)                                                            <------------CBF --------->ARR11(3)     <---------At4g35610                                   <---------ICU4 <---------ARR11(3)     --------->At4g35610                               ------------>ATHB5 <---------AHL20(1)   --------->HSFB2a(2)         ---------->DOF2  ---------->DOF2  <---------RAP2.6(2) ----->GT1  --------->ANAC58            <---------ZAT6          --------->AHL20(2) <---------LBD16 --------->ARR10      <---------HSFB2a(2)   --------->MYB52(2) --------->AHL20(2)  --------->RAP2.6(3)   taagatattttaaaacggaaatttgcagaagcccatttactagtgttagtttcaaagaaggcccattaaaaaaggcccaaatattgccggcttcgaaact  22196400             --------->ANAC58                                                                     <--             --------->ANAC58                                                                     <--             --------->ANAC46                                                                     ---            <---------ZAT18                                                                       ---            --------->ZAT18            ------>ZmHOX2a(1)      --------->ZAT6                     <---     <---------YAB1                   *TSS             <------ZmHOX2a(1)                      <------    <-----------TBP        ------->GAMYB              ----------->GT1                         ------- <---------DAG2          --------->At4g35610         <---------TOE2(3)                        ------- <----------DOF2         <---------At4g35610       ------>ZmHOX2a(1)                    <-----------GT1   cgacttttttatagcacacaaggtttcaactgaaaacattcctcttcgccttcctaaggaaaaaacactagtcgctcgctgctcttcaattttcttctcg  22196500        <---------WOX13(1)      --------->ATHB12 ---------ARR10                              <-----------GT1 -------ARR11(1)                             --------->KAN4(2)                <----------DOF2 ---->TEIL--------->ATHB12     --------->ANAC46                     <---------GLK1(1) ------>GLK1(2)                <---------At4g35610                  <---------CCA1(2)           <---- ------CCA1(2)                 --------->ANAC55(2)              <---------ANAC46  --------------->AGL15 ---HSFB2a(2)          <---------GLK1(2)<---------YAB1   <---------ATHB12  --------->ANAC58  <------- -->HSFB2a(2)      ------>ZmHOX2a(1) <----------DOF2------>ZmHOX2a(1)      --------->ANAC58  <------- -->HSFC1(1)<---------GLK1(1)<-----------RAV1(2) ------>ZmHOX2a(1) ---------->TaMYB80  --------->AHL20(2)   aatctaatcgattgatttctccttcgattcttcaggtaacttttgattatcctcctctaatcaattgtgtatatcccaagctttctctataaattagggt  22196600                                                                    --------->CCA1(2)                                                                   --------->ARR11(3)                                                                   --------->ARR14(2)      --------->MYB52(1)     <------ZmHOX2a(1)   <---------ANAC58  <---------ARR14(2)          <----- -----GLK1(1)            --------->LBD16         <---------ANAC58  --------->ARR11(1)   --------->ZAT6 --TOE1(3)           <-----------GT1        <----------DOF2  ---------->DOF2       <----------DOF2  - --TOE2(3)       <----------DOF2 --------->GLK1(2) ------>NtERF2   <---------ARR11(3) <-----------GT1   ttctgaatcaacgatttttcttttatccgtaggagaatcactgaagcttttgcctcccaagtagaaagagatatggtaagcgtttctttaactctatttt  22196700                                                   ----------->GT1            --------->ATHB12                       <---------ZAT6                            -------- ------GT1 <---------MYB52(1)               --------->YAB1   --------->ATHB12               <-------- -------->ATHB12    <-------GAMYB     --------->YAB1        <---------YAB1      ---------->DOF2     <   cttcattgtttcagttattggcgattgtattctctgtttattgtaatcgtattgtgttaattttgatttgactcatcttctctaaagttcaatttcaaaa  22196800            <---------YAB1           <---------ARR11(3)           --------->ARR11(3)        --------->LBD16    --------->GLK1(2)    <----------DOF2   <---------GLK1(1)    <---------ANAC58                                                     --------   --------->GLK1(1)    <---------ANAC58                                                     -------- ------->AGL15    <---------ARR11(3)           <---------YAB1                                -------- ---------AG<------ZmHOX2a(2)     --------->LBD16                    <----------DOF2    <---------YAB1 ---------TOE2(3) --------->ARR11(3)  --------->CCA1(2)       <-----------GT1<-----------RAV1(1)   ttagggattccgagatcatagatattgctttgtttccgagatttgagttattcttaagcttgttttactaactttcaatatgttggatttgttataggca  22196900  Previous    Next  AGI:  At1g60170.1    Description:  EMB1220 (EMBRYO DEFECTIVE 1220). similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G70400.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40905.1); contains InterPro domain Pre-mRNA processing ribonucleoprotein, binding region (InterPro:IPR002687); contains InterPro domain NOSIC (InterPro:IPR012976) Range:  from: 22196438    to: 22199065    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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