Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        <---------ZAT18                                                                ------->TEIL                        -                                                             <---------YAB1                         < ------ZmHOX2a(2)                                      <---------ARR11(3)                      <----- ------->ARR11(3)               ----------->GT1        --------->ARR11(3)--------->MYB46(3) <-------- --------ARR11(3) ----------->ARR10  --------->ICU4---------->DOF2    --------->ZAT14       --------- >YAB1 --------->ICU4<------ZmHOX2a(2)           <------ZmHOX2a(2)    <---------ZAT14<---------GLK1(2)   agatcagtattgatgagggtgagatcagttttctaggtaaatattgttcggatcaaagttctcatgaatcagtgaaccaaagttttagattcttctggta  22154200                --------->ANAC58                --------->ANAC58          -------->P          <---------At5g28300       <---------ANAC58    --------->ALFIN1 -------->GLK1(1)  --------->GLK1(2)                                             <---------AHL20(2) ---------GLK1(1) <---------GLK1(2)                      ----------->GT1         --------->AHL20(2) ---P  <---------ANAC58---------->DOF2                 ------>MYB83  <---------AHL20(2) -HSFB2a(2)  --------->LBD16                           ------>MYB46(1)      ---------->ID1 >HSFB2a(2) --------->ANAC46                         ------->GAMYB <----------DOF2                 --   agaattctgacttaccgcaagaatctaaagtgttgatatgttttgtcaaatacaaccaaatgtaaaattcttttatttgtttttttaatacattttgagt  22154300                                                                       <---------REM1(1)                                                             <---------GLK1(1)                                                            <---------ARR14(2)                           <---------ANAC58              <---------TOE1(2)                           <---------ANAC58             <---------MYB52(1)                      <---------STY1(2)                <-------GAMYB  --------->ARR11(3)                      --------->STY1(2)               --------->MYB55(2)               <-----------HVH21                      --------->MYB52(2)        <<<<<<<<<<<<<<<<<LFY                          <---------MYB46(3)    --------->ARR11(3) --------->GT1--------->YAB1     --------------------->WRI1 --------->ARR14(2)              ------->TEIL   atggtttttaaaacaatggtcactagctagagtgtccatgatcaattcgtcttcggtcgttggatttgctaagatgtagttcttgaacatgatgtatgca  22154400                                                               ----------->HVH21                                                        <---------DAG2                                                   <---------ANAC58                                                   <---------ANAC58                                                  <---------HSFC1(2)                                                  --------->HSFB2a(1)             ---------->ID1             --------->ARR11(3)                   --------->HSFC1(2)          <---------ANAC58             <---------ARR11(3)                   <---------HSFB2a(1)         <---------ANAC58     --       ---------->DOF2                  <----------DOF2 <----------DOF2<-------TEIL           ------- ---------->DOF2                        --------------------->WRI1 ------>ZmHOX2a(2)  <----------DOF2   agttaaagagaaagagatgttcttaatcttcagttttcttctctttgtacgatgcttccttttcggtgatcgatgcattgacttgttccttttgtccaga  22154500                                                                                 *TSS                                                                              <---------ATHB12                                                                          ------------>CBF                                                                         ------>NtERF2                                                                        --------->ANAC58                                                                        --------->ANAC58                                             <---------ZAT6             --------->ANAC46            --------->YAB1                  <---------TOE1(3)        ------>ZmHOX2a(2)           <---------YAB1                   <---------TOE2(3)        ==============================HOX2a_HOX2a --------->HVH21                  ----------->GT1                  --------->ARR14(2)             <-- -->LBD16--------->YAB1         <-------GAMYB----------->GT1       <---------ARR14(2)       <------ZmHOX2a(1)   gatgacaactactataatggtttgaaaaacttagggttgaaaaattagggttaaaaaaaaaaactagtggatcgacgccaatggatagagtagaggaaga  22154600                                                                                    --------->LBD16                                                                                    ------>ZmHOX2a(1)            ----------->GT1                                               <---------ARR11(3)      --------->CCA1(2)                                              ==============HOX2a_HOX2a     <---------ARR14(2)                                              ------>ZmHOX2a(1)     --------->ARR14(2)                                       <---------YAB1------>ZmHOX2a(2) <------NtERF2              ---------->DOF2             <---------HSFB2a(2) ========================= -------LBD16             >>>>>>>>>RAP2.2               --------->HSFB2a(2) ===============HOX2a_HOX2a   ggcggaagatagggaagtaagtatacaatctaaagaagatgagagtttttgtaagtttctcgagatgattcctcttgatctaattcctgatatactcttg  22154700                   <---------ANAC46               <---------ZAT2               <---------At4g35610               --------->At4g35610               --------->ZAT2                              <---------ALFIN1              <-----------RAV1(1)                       --------->YAB1           --------->ARR14(2)                          --------->MYB46(3)           <---------ARR14(2)                          <---------ATHB12            <---------SPL7     ------>ZmHOX2a(1)  --------->ARR14(2)           --------->WOX13(1)--------->GLK1(1) ===========HOX2a_HOX2a <---------ARR14(2)    --------->YAB1  <---------ATHB12    <---------MYB46(3)   agacttcctgctaaatctgctgcgaggttccactgggtctcttagctatggtcatcaatcaccactcatccagatttcatcaggtcgttcgcgagtcagt  22154800                                                                                      <------ZmHOX2a(2)                                                                                     <---------ARR11(3)                          --------->LBD16                                           <---------At4g35610                         <---------ANAC58                                      --------->LBD16                         <---------ANAC58         <-----------GT1            <---------LBD16                         <---------ANAC46      <---------ARR14(2)          <---------ARR14(2)                      <---------DEAR3(1)       --------->ARR14(2)          --------->ARR14(2)      <-                  <---------AtMYB61  ----------->HVH21            ----------->RAV1(1)--------->ARR11(3)               <----------DOF2     <---------ANAC55(2) --------->ANAC46    --------->GLK1(2)       --           <---------ANAC46        --------->ANAC55(2)<---------LBD16     <---------GLK1(1)    <-----   cttcaactaggttgtgtcttttggtctgcgtgaaaacaagtgacaagcgtattttctgcgcaatgccccaacatgaaaatccggacagatcatgttatcc  22154900         <---------MYB52(1)                                       <---------ANAC58         --------->DOF5.7(2)                                <---------WRKY38(1)        <-------GAMYB                                    <---------DEAR3(2)     <---------ANAC46                            --------->PCF5   <---------ANAC46  --------->ALFIN1                            --------->HSFB2a(1) <---------ANAC58  --------->GLK1(2) ------->MYC3                             --------->ANAC58  <---------WRKY12       <---------ARR14(2) <-------MYC3   ---------->DOF2           <---------YAB1 <------MYB83              <---------GLK1(2) ------MYC3 <---------At4g35610      <---------ICU4      <------MYB46(1)          <---------HSFB2a(1) ----->MYC3 --------->At4g35610  <---------AHL20(2)   <-----------HVH21           --------->HSFB2a(1) ------------AGL3          --------->YAB1 --------->ANAC58  <-------TEIL <---------YAB1   acatgtggagcgttatctgaaagacactctcatatttgattatcacgaatggtcccagtcggtccatggcttgatatgtttgggagattcttggggcata  22155000                                                                                 --------->WRKY18(1)                                                                             ------>ZmHOX2a(2)                                                                            --------->ARR14(1)                                                                         ----------->ARR10                                                                         <---------YAB1                                                                      <---------ARR14(2)                  <---------YAB1         ---------->DOF2              --------->ARR14(2)                --------->YAB1    <---------DAG2                     <------ZmHOX2a(1)    -----------                <---------ICU4    <---------MYB59                    ===============HOX2a_HOX2a------               <---------ATHB12   --------->TOE1(3)                <---------TOE2(3)<---------ANAC46               --------->ICU4     --------->TOE2(3)             <----------DOF2 <-----------HVH21             --------->WOX13(1)<-----------GT1             ------->TEIL--------->CCA1(2)<--------P   ttgtagtttggaatccaatcatgagacaacatgttaccttaccaaaagtcgcatttgaatgtagctctttaggatatgatccggtcgagggtaagtataa  22155100  Previous    Next  AGI:  At1g60075.1    Description:  pseudogene, F-box protein-related, contains TIGRFAM TIGR01640 : F-box protein interaction domain Range:  from: 22154581    to: 22155804    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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