Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       --------->YAB1       --------->ANAC58               --------->TOE2(3)              <---------ARR14(2)          --------->ANAC46        --------->YAB1 --->REM1(1)  --------->ARR14(2)          --------->ANAC58       <---------YAB1   <---------YAB1 -TEIL       <------ZmHOX2a(1)   <---------MYB59  --------->At4g35610   --------->YAB1   tcaaaaatgctaagaggattctatcatacaacatgcctaatctcacacaatcagccaaaacatttttctgataatcgtcaatttccgattgaatttgccg  22152800                  --------->REM1(1)                       <---------HSFC1(2)                 <-------TEIL                             --------->HSFC1(2)             --------->ANAC46                  --------->ANAC58             --------->ANAC58                  --------->ANAC46             --------->ANAC58                  --------->ANAC58                         --------->At4g35610         --------->GLK1(2)                  --------->TOE1(2)                      --------->DAG2  --------->HSFB2a(2)                      --------->ANAC58           --------->RAP2.6(2)  <---------HSFB2a(2)  <---------TOE2(3)   --------->ANAC58      ---------->DOF2  ---------->DOF2   attactagaagaatcaagctacattatggatttagacactagaaaacgcacgaaaatggaagtatcgcaaagtcgcaatagagaaaaagcagattactag  22152900                                       --------->ATERF1(2)                                       <---------ATERF1(2)                                       --------->HSFB2a(2)                                       <---------HSFB2a(2)                                      <---------LBD16                                   <-------MYC3                                   ------->MYC2                                   ------->MYC3                                   <-------MYC2            --------->DAG2        <---------ANAC58           --------->ZAT14   ----------->HVH21           <---------ZAT14--------->TOE1(3)                                <---------ZAT2           ---------->DOF2--------->TOE2(2)                                --------->At4g35610     ========================HOX2a_HOX2a <------NtERF2              <---------SPL7     ------>ZmHOX2a(2)    --------->TOE1(2)                      --------->At4g35610       ------>ZmHOX2a(2)    <------ZmHOX2a(2)    ----------->RAV1(2)                <---------LBD16<---------At4g35610    =========================HOX2a_HOX2a--------->LBD16   <---------WRKY18(1) --------->At4g35610   --------->ARR14(2)   -------->P<---------ANAC58       ----------->HVH21------->TEIL    <------ZmHOX2a(2)   <---------ARR14(2) ------>ZmHOX2a(1)<---------ANAC46--------->YAB1 --------->SPL7     --------->ARR14(2)  <---------GLK1(1)  <---------MYB59--------->ALFIN1  <-------TEIL--------------->AtSPL3 <---------ARR14(2)   ttggagatcggagtaaagtgattcctaacctgagacgcgtgccggaagagaatggattcatgaccggagcggtacgaagctgatgaaatcagatcggaga  22153000                                                                 ------>ZmHOX2a(2)                                                                --------->CCA1(2)                                                                <------ZmHOX2a(2)                                                               <---------ARR11(3)                                                               --------->ARR14(2)                                                               --------->ARR11(3)                                                  --------->At4g35610                                                  <---------At4g35610                                           ------>ZmHOX2a(2)   <---------ARR14(2)                                          --------->CCA1(2)    --------->AGP1                   <---------WRKY12       <------ZmHOX2a(2)    <---------AGP1                  <------ZmHOX2a(2)      --------->ARR11(3)    <-----------ARR10       ----------->GT1                   <---------ARR11(3)   <---------CCA1(2)          ------>ZmHOX2a(2)      ----------->GT1                    <---------AGP1     --------->HSFB2a(2)        <---------ARR11(3)     <---------At4g35610           <-------TEIL  --------->GLK1(2)            <----------DOF2     --------->At4g35610 ------->TEIL    --------->AGP1     <---------HSFB2a(2)    --------->ANAC55(2)   cgattgaagcggaaaaatggatcaacgaatttgaaaattcatagatctaagaagctgaatttccagatctgagtgtttttctttcacttgatctcttcca  22153100                                                                              --------->MYB52(1)   --                                                                              <-----------GT1     ---                                                                  ----------->GT1           ---------                                                                 --------->ANAC58          <---------ARR14(2)                                                                 ----------->GT1           --------->ARR14(2)                                                                 --------->ANAC58   --------->GLK1(1)                                                         ---------->DOF2 --------->AHL20(1)<---------GLK1(2)                      ---------->DOF2                 --------->LBD16    <---------AHL20(1)*TSS   ---                 ----------->GT1             <-----------GT1   --------->MYB52(1)------->GAMYB  -----   ctatcgatgaaaacatgaagagagaaaagagaggtctgtgttttttttttctcttccctgaaagaaaacggaaaaaatattaacggagttgcagattcta  22153200                     --------->At5g28300                     --------->DOF5.7(2)     --------->ARR14(2)                              <-------        --------->ANAC46                     <---------ARR14(2)                             ---------    --------->YAB1  ------->GAMYB         --------->ETT(1)                                  <-------- ----->GAMYB     <---------DOF5.7(2)      <---------ANAC46       <----------DOF2       ------------>CBF ------>ANAC58   --------->MYB52(1)     <-----------HVH21      ---------->ID1         ----------->RAV1(1) >GLK1(2)  <---------ALFIN1            ----------->HVH21      <-----------GT1  <---------ANAC58  ---- ------>ANAC58 --------->DOF5.7(2)     <-----------RAV1(1)<------------------------ANAC81   <-------- ---->MYB52(1)<----------DOF2  ---------->DOF2       <---------HSFB2a(1)       <---------ANAC58  <---   acggaatcatacaacactttaacggtaacagattaaagcctctgtcggattcagaaggtttgtttttcttttttttttttttcttgggcaacaatttttt  22153300               ---------->DOF2            --------->TOE2(3)            <-----------HVH21           --------->ANAC58                                                          <-------TEIL           <----------ID1                                                           <--------P           --------->ANAC58                                                      <---------TOE2(3)     ----------->TBP                                                   --------->DEAR3(1) --AHL20(2)<---------ANAC55(2)                                        <------NtERF2*TSS >AHL20(2) --------->ANAC46                                         <---------DEAR3(1) -AHL20(1)<-----------------------TaNAC69(2)                --------->DAG2      --------->DAG2      X ----------->AtSPL8                         <---------TOE1(3)       --------->DEAR3(1)              x -AHL20(2)<-------TEIL                      <---------TOE2(3)      --------->ATERF1(1)         <----- ------------AtSPL8                ----------->GT1         ---------->DOF2     ---------->DOF2<------   ttgtactataaatacgtcaaagacagagagacccagacagaaaattagggtttagaaaaacaaaagtgagtcgccgatggataaaggtagatgtcgaaat  22153400                                             <----------DOF2                                            ------>ZmHOX2a(2)                                          <---------ARR14(2)                                          ------->TEIL        --------->ZAT14                   <---------AGP1     <---------ANAC46                     --------->ARR11(3)   <-------GAMYB                          <---------ARR11(3)                 --------->ZAT6  <-----------RAV1(1)                     --------->ARR14(2)          <------MYB46(1)         ------- XXXXXXXXXXXXXXXXXXX>MIR859     <---------YAB1           --------->YAB1<XXXXXXXXXXXXXXXXXXXXMIR859<-- xxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->TOE2(3)   --------->YAB1  <------MYB83            <------ ----ARR11(3)                   <---------TOE2(3)    <-------TEIL --------->ATHB12     <---------ARR11(3) ---GLK1(1)      --------->YAB1<-----------GT1   <---------YAB1  <---------YAB1        --------->ARR11(3)   ctctctgttgtgaagtcaaacatgagtatgaattaacattaatggatctttttgattcataatactcatgtttggtttcacagtagatagatatcgacgt  22153500              <---------YAB1            --------->YAB1            <---------ICU4      --------->At4g35610           --------->ICU4       <---------At4g35610     ----------->GT1   <---------ANAC46                               --------->TOE2(3)  <----------DOF2    <---------TGA2(2)                          ----------->GT1 -->O2 <---------MYB52(1)   --------->ALFIN1                  <---------ANAC58                   <--- -------CCA1(2)     ----------->TGA1              ----------->GT1  <-----------GT1        <---------AtLEC2 ---O2--------->TOE2(3)<---------bZIP60(2)--------->TOE2(3)   <---------ANAC58      --------->YAB1   ctatctttcgttaattatgttgatgacgttgtggagctatctatcgttagagtggataaacttgtcttgttacattagagagttgatcatatgcatggat  22153600                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        <-----------------AGL1                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                                                      <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                         <<<<<<<<<<WRKY38             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  <---------ARR11(3)                  XXXXXXXXXXXXXXXXXXXX>MIR774           <---------MYB46(3)     --------->ARR11(3)           <---------AHL20(1)                  --           <----------DOF2        <---------GLK1(2)            --------->AHL20(1)             <------      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <<<<<<<<<<WRKY43      --------->ARR11(3)            --------     <---------At4g35610        <---------TOE1(3)           <---------AHL20(2)       --------->At4g35610 *TSS--------->At4g35610        <---------TOE2(3)   <-----------GT1 <---------MYB46(3)       <------- ----TEIL<XXXXXXXXXXXXXXXXXXXXMIR774     <<<<<<<<<<WRKY26   --------->AHL20(2)   <xxxxxxxxxxxxxxxxxxx   tcatttcagatggctgtttgggtaactaatatttaagattttggtcaatttaagttaccaatttatatattggttacccatatggccatctcaaatttaa  22153700  Previous    Next  AGI:  At1g60070.1    Description:  clathrin binding. similar to GAMMA-ADAPTIN 1, clathrin binding [Arabidopsis thaliana] (TAIR:AT1G23900.2); similar to GAMMA-ADAPTIN 1, clathrin binding [Arabidopsis thaliana] (TAIR:AT1G23900.1); similar to hypothetical protein OsJ_019439 [Oryza sativa (japonica cultivar-group)] (GB:EAZ35956.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40914.1); similar to hypothetical protein OsI_021063 [Oryza sativa (indica cultivar-group)] (GB:EAY99830.1); contains InterPro domain Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain; (InterPro:IPR008152); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024) Range:  from: 22146270    to: 22153191    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g60072.1    Description:  MIR859a; miRNA Range:  from: 22153383    to: 22153508    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g60073.1    Description:  MIR774a; miRNA Range:  from: 22153601    to: 22153698    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version