Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   <-----------HVH21     --------->MYB59                                                        <---------ARR14(2) ----->LBD16                                                          <---------HSFB2a(2) --------HVH21                                                        --------->HSFB2a(2) ---->ANAC46                               <---------ZAT14           <---------LBD16              <-- --ARR14(2)                 ------>ZmHOX2a(2)                    <----------DOF2 --------->LBD16  <-- ->ARR14(2)             <---------YAB1 <------NtERF2         <---------ALFIN1   <---------ANAC55(2)   gtcaaattaggctctatcttcaacttgtgatcggagatggccgagttctctgaaacccttgcaccatctttttcggaagaacccgtgagcgtcttcttaa  22123200                                                                       --------->TGA1a                                                                       <---------O2                                                                       --------->ANAC58                                                           --------->TOE2(3)                                                       <---------ANAC58--------->O2                                                       <---------ANAC58--------->ANAC46                                                      <---------HSFB2a(1)                                                      --------->HSFB2a(1)                                                      --------->HSFC1(2)                                                      <---------HSFC1(2)                          --------->ANAC46         <---------GLK1(1)   --------->ANAC58        <----------DOF2   --------->ANAC58         --------->GLK1(1)   <---------TGA1a    <---------CCA1(2)     --------->ANAC58       <------ZmHOX2a(1)  ------>ZmHOX2a(1) -------GLK1(2)   ----------->HVH21         --------->ALFIN1------>ZmHOX2a(1)            --------->ICU4 -------ICU4    ----------->RAV1(2)   --------->WRKY18(1)  --------->TOE1(3)           <---------At4g35610   gaatttctatcttttgttccctgactccaagtaattgagagtcaaggtgaaggagatgcttccttaactcctcacgagacaaacccttgagatgatgagg  22123300                     <---------GLK1(2)                 <---------AtLEC2                 --------->YAB1                                                             ------>ZmHOX2a(2)                <-------TEIL                                                     <---------ANAC46              <-------MYC3                  --------->ANAC58                   --------->ALFIN1              ------->MYC3                  --------->ANAC58                  <----------DOF2          =============================HOX2a_HOX2a                           <---------ANAC46          ==========================HOX2a_HOX2a                              <---------ANAC58          <------ZmHOX2a(2)             --------->ANAC58                     <---------ANAC58         <---------ARR11(3)             --------->ANAC58          ------>ZmHOX2a(2)       --------->ARR11(3)         --------->ARR11(3)     ------>ZmHOX2a(1)                <------ZmHOX2a(2)        <---------ARR11(3)        <---------At4g35610  ------>ZmHOX2a(1)                  <---------ARR11(3)      <---------YAB1  --------->ATHB12 <---------YAB1  --------->YAB1               --------->ARR11(3)  <-------GAMYB   gaagtcattgagatcacatgcatgattcttcctcctctcatcactcaaggcattgaacttggccacgatctcatgtagggcttgtgggttatgatcttga  22123400                                                            <------NtERF2                                --------->At5g28300        --------->LBD16                            <---------PCF5                 --------->At4g35610                           <------NtERF2                   ------>NtERF2                    <-------GAMYB                          <---------At4g35610                   ------>ZmHOX2a(2)           ----------->RAV1(1)                  <------ZmHOX2a(2)           ----------->HVH21                 <---------ARR11(3)          --------->MYB46(3)          --------->ZAT18                <---------GLK1(1) --------->MYB52(1)     <---------RAP2.6(2)         <---------ATHB12--------->ETT(1)    --------->DEAR3(2)   <---------ZAT14  <----------DOF2    ------>NtERF2--------->ARR11(3)   --------->At4g35610<---------LBD16 <---------ZAT14    ---------   gactgaggccaaacatggagatcgttgtcgggaccgtaacagatgaaaccgacagagttgccgcagagaacagagagctctgaggctttcttcttaaagc  22123500                                                        --------->At4g35610                                                      --------->ATHB12          <---------ANAC46                                                      <---------ICU4         ----------->TGA1                                                     <---------YAB1          ----------->HVH21                                                   --------->YAB1          <---------At4g35610                                                   <---------ICU4   <------MYB83<---------bZIP60(2)                 --------->DAG2                 --------->YAB1      <------MYB46(1)         <--------  --------->GLK1(1)                             <---------ICU4     --------->MYB59--------->ALFIN1  <---------GLK1(1)                       <-----------GT1--------->TOE1(1) --------->At4g35610   ---- ->DOF2         ---------->DOF2  ------>ZmHOX2a(1)<---------YAB1 <---------MYB52(1) <------ZmHOX2a(1)   ctggaaatctctgtttgaaaaagctctgtttcttcctatgcaaatcaccatcatcatcatcggacttgttaggtttcttctgacgaggagccatcttttg  22123600                                                          <----------DOF2                                                         <---------HSFB2a(1)                                                         <---------HSFC1(2)                                                         --------->HSFC1(2)                          <---------AHL20(2)   --------->DAG2    ------>ZmHOX2a(2)              -----                         --------->AHL20(2)   ---------->DOF2    --------->YAB1                 <----                     <---------YAB1      ----------->GT1 --------->HSFB2a(1)                  ------- --DOF2            <----------DOF2      ----------->GT1--------->ARR11(3)                    <------- ------>DOF2    ------->TEIL   --------->TOE1(2)       <---------ARR11(3)     --------->ZAT18--------   aaagagagagagaagatgaaactttgattaaatcgtgagagagagataaaaagcagagaactttcgatcgtaatgggaagtgcaacgagaaggctatgat  22123700                                                            <------MYB46(1)                                                            <------MYB83        --------->AHL20(1)                             --------->ATHB51        --------->ARR11(3)          ------------>CBF   <---------ICU4             <---------CCA1(2)  <----------DOF2                   ------>ZmHOX2a(1) --------->ICU4  <---------ANAC46 ---->ICU4                         --------->TOE2(3)  <---------YAB1  <---------ANAC58 -----YAB1                   <------MYB46(1)        --------->YAB1    <---------ANAC55(2)         --- -->YAB1<---------AHL20(1)   <------MYB83        ------->GAMYB        ----------->GT1        <------- --YAB1 <---------AHL20(2)  <---------TOE2(3) --------->MYB52(1)      <---------ANAC58       <------- ->ICU4<-----------TBP      --------->MYB59--------->ANAC46 ----------->GT1     --------->YAB1  <----   gattctttaatatatagagacttagaagattaggtttcctcaatcccacaacggtcataatttggtgaaaatgcgtaaaaaatcatatctaatatgcgcg  22123800                                                                                            <--------                                                                                          --------->ARR14(2)                            ------>ZmHOX2a(2)                                             --------->MYB52(1)                           <------ZmHOX2a(2)                                           --------->ANAC58                          --------->ARR11(3)                                           --------->ANAC55(1)   --------->ARR11(3)     <---------AGP1                                               --------->ANAC55(2)   <---------ARR11(3)     <---------ARR11(3)                                           <---------ANAC55(2)  --------->GLK1(1)      <---------CCA1(2)    <----------DOF2          <---------AHL20(2) <---------ARR14(2) ------>SPL7       <---------YAB1          <-----------GT1        <---------AHL20(2)   --------->ANAC46 --ANAC58       <----------DOF2           <-----------GT1         <---------AHL20(1)   --------->ANAC58 --ANAC58    <---------ARR11(3)       <---------RVE1(1)           --------->AHL20(2)  >>>>>>>>>>AtSR1 -----SPL7   --------->ARR11(3)    <---------ZAT6             ------>ZmHOX2a(1) <---------YAB1      <   tccgaaatcttgtgaggtcttttcattagatctcgtagtgatattttcctttttttgcttcatcctattttatttagtttttatgaaacgcgtaactgta  22123900                                                                                                   <-                                                                                             <-------                                                                                           <---------YAB1                                                                                         <---------AHL20(2)                                                                                         -------->ATHB1                                                                                         <--------HAHB4                        --------->AHL20(1)                                               --------->YAB1            <---------WOX13(1)                                                           --------->AHL20(2)         <---------AHL20(1)                                                   <---------ANAC58 <-----         <---------AHL20(2)                                                   <---------ANAC58<------         --------->AHL20(1)                                            <---------AHL20(2)--------->ATHB51         --------->AHL20(2)<---------AHL20(2)                         <---------YAB1     <---------ICU4    ------>ZmHOX2a(1)   <---------AHL20(1)                         --------->AHL20(2)   <---------ATHB12   --------->TOE2(3)    --------->AHL20(2)                         <---------AHL20(2)   <---------ATHB51 ----MYB.PH3(1)    --------->MYB46(3)                              --------->AHL20(1)   --------->ICU4 -----------GT1  ----------->RAV1(1)  --------->ANAC46            --------->AHL20(2)  --------->WOX13(1)   tttttcctcaattaattgccaacaaatattttataaatcgacgcagtcttcttaagtggttttgtcaattttattatttggcttaagtcaattattttta  22124000                                                                                  --------->ATHB12                                                        <---------GLK1(1)         <---------ICU4                                                 -------->ATHB1                   >>>>>>>>>>AGL20                                                 <--------ATHB1                   --------->ATHB51                                                 --------->ATHB51                 >>>>>>>>>>AGL22                                                 --------->ATHB12                 >>>>>>>>>>AGL24                                                 >>>>>>>>>>AGL24                  -------->ATHB1                                                 --------->YAB1                   <------------ATHB5        <---------ARR14(2)                       >>>>>>>>>>AGL20                  --------->YAB1    ------>MYB46(1)  ----------->GT1             >>>>>>>>>>AGL22                  <--------ATHB1    ------>MYB83    --------->DAG2               <---------ICU4                  --------->ICU4  <---------MYB59  ---------->DOF2              --------->ICU4                   <---------ATHB12 ----------GT1--------------->AGL15             <---------ATHB51                 <---------ATHB51 --AHL20(2)   <----------DOF2                   <---------ATHB12      ---------->DOF2     ----------- ----AHL20(2) <---------------AGL15   <-------MYC3     --------->ARR14(2) <---------ARR11(3) ---YAB1--------->ARR14(2)            ------->MYC3     <---------ARR14(2) --------->ARR11(3)   ------   tttacctacatatttgctttaaaaagtaataacatttacacatggtctcaataattggatttgcccaaaaaaaaaaggtctcaataattggacaacacaa  22124100  Previous    Next  AGI:  At1g60040.1    Description:  AGL49; transcription factor. similar to AGL50, transcription factor [Arabidopsis thaliana] (TAIR:AT1G59810.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 22122740    to: 22123594    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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