Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <---------YAB1                                    -------->HAHB4                                    <--------HAHB4                                    --------->ATHB51                                    --------->ATHB12                                    <---------AHL20(2)                                    --------->YAB1                                    <---------ICU4                                    -------->ATHB1                                  --------->YAB1                                   --------->ICU4                                   ----------->GT1                                   <---------YAB1                                  ----------->GT1                                <---------AHL20(2)                                 <---------YAB1        <----------ID1          --------->AHL20(2)                               <---------ICU4 <-----------GT1              <----------DOF2                                    --------->YAB1 ------>CCA1(2)   ---------->DOF2--------->YAB1                            <----------DOF2 ------ARR11(3)  <---------AHL20(2)<---------ATHB51    --------->YAB1      --------->TOE2(3)---------   atataacataacaacaaatttaaagtgaaaccctttaattattagaaaaataagaaaacataacttcgaaatttgaactttaaaaatgataaaaaaacag  22064700                                                                                      <---------MYB46(3)                                                                                  <---------DEAR3(1)                                                                                 <---------At4g35610                                                                             <-----------HVH21              <---------AHL20(2)                                          --------->ANAC58              <---------ATHB51                                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           <---------AHL20(1)                                             --------->ANAC58        xxx           --------->AHL20(2)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<------           --------->AHL20(1)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <------           <---------AHL20(2)                       --------->ATHB12      --------->ANAC46  xxxxxxxxx          --------->AHL20(2)                       <---------YAB1        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------YAB1                          <------ZmHOX2a(1)   --------->ZAT18  --------->MYB55(2)       -------->ATHB1                           --------->ICU4       <---------ZAT18 <---------AtMYB61       <---------ICU4                          <---------TOE2(3)   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)<      <---------AHL20(2)                       <---------TOE1(3) --------->MYB46(2)  --------->ALFIN1      --------->ICU4 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------ZAT6      <---------ATHB51                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --------->At4g35610<      --------->AHL20(2)----------->GT1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx >MYB52(1)<---------AHL20(2)              <------ZmHOX2a(1)  <---------YAB1 --------->YAB1 --------->ICU4   aaatacaaattattaaattattcaatcggataaaaatccctataggactaaggattattggtgatgttaggcgcacaagcatcagcggtggtagtgatgg  22064800                                                                           ======================HOX2a_HOX2a                                                                           ------>ZmHOX2a(2)                                                                          <------ZmHOX2a(2)                                                                          =======================HOX2a_HOX2a                                                                         <---------ARR14(2)                                                                         --------->AGP1                                                           ------>ZmHOX2a(1)                                                           =======================HOX2a_HOX2a                                                      <---------ALFIN1   <---------AGP1                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                               ------>NtERF2    <---------HSFB2a(1)      --------->ARR14(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         --------->KAN4(1)        <---------ARR11(3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->AtLEC2    ======================HOX2a_HOX2a ---AtMYB61            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             --------->ARR11(3)         < ---YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------KAN4(1)        --------->ARR14(3)     <xxxx xxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------ARR14(3)    ------ ---------ANAC58  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxsmallRNA(si3)         <xxxxxxx ---------ANAC58  xxxxxxxxxxxxxxxx>smallRNA(i)  --------->HSFB2a(1)    ----------->ARR10    --------- >smallRNA(fl3)  xxxxxxxxxxxxxxxx>smallRNA(i)  <---------KAN4(2)   --------->TOE2(3)      <------ZmHOX2a(1)   tagcgagacgattagtttcagactggtgatggctgccatccatggaaggaatgtccccatcctcttcaacattaagatcttgaagaacacgaggaggtaa  22064900                                                                                               <xxxxx                                                                                              ------>ZmHOX2a(1)                                                                                              xxxxxxx                                                                                            ------>ZmHOX2a(2)                                                                                           <------ZmHOX2a(2)                                                                                          --------->ARR14(3)                                                                                          <---------ARR14(2)                              --------->ANAC58                                            <---------ARR14(3)                         <---------TOE1(3)                                                --------->ARR11(3)                         <---------TOE2(3)                                                <---------ARR11(3)                   <---------------AGL15                                         xxxxxxxxxxxxxxxxxxxx  >>>>>>>>>TBF1    --------------->AGL15                                         <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <---------TOE1(3)                  --------->ARR11(3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     ------>ZmHOX2a(1)              --------->MYB52(1)   --------->ARR14(2) ---->DOF2        <-----------------AGL1 <----------DOF2   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <- xxxxxxxxxxxxxxxxsmallRNA(se3)--------->ANAC58<---------TOE2(3) <---------YAB1  <---------CCA1(2) <-- -->GT1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   xxxxxxxxxxxx   agaagaagaaggctcaccattcttcttaaggtactcaatcctgcttttaaggctatcgagatagtcatcaataacagaactcaaatcttgaagatccttt  22065000           --------->ANAC58                                                         <----------DOF2           --------->ANAC58                                                       <---------At4g35610           <---------ALFIN1                                                       <---------ZAT2      ----------->HVH21                                                       <---------ANAC55(2) xxxxxxxxxxxsmallRNA(i)                  --------->ANAC46                     --------->ANAC58 xxxxxxxxxxxxxxxx>smallRNA(si3)        ----------->RAV1(1)                    --------->ANAC46 xxx>smallRNA(si3)                     <---------ALFIN1                  --------->YAB1           <-- --------At5g28300                   ------->GAMYB                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---------GT1--------->ANAC46       --------->ANAC46    --------->RAP2.3(3)   --------->ANAC58 <----- xxxxxxxxx>smallRNA(i2)  --------->TOE1(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  ------->TEIL  <-----   tcaccgagttgacacacatcaatagttccttcgatacaaccccacataatttgtcgagccctcaaaactcgattttcatcacgcagcttttgcaattgcg  22065100                          ---------->DOF2                    --------->ANAC46                    --------->ANAC58                                                            -----                    <---------ANAC55(2)                                                       <------      <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                   <---------AtLEC2    <---------DAG2  --------->ANAC55(1)          <---------ANAC58                    <xxxxxxxxxxxxxxx    <----------DOF2 --------->ANAC58             <---------ANAC58                 <------------CBF --------DOF2    ----------->HVH21          <----------DOF2                      --------->ATHB12   < ----ANAC58    ------>ZmHOX2a(1)       ------>ZmHOX2a(2)                  <----------DOF2   <-------- ----ANAC58    ===============================HOX2a_HOX2a    <----------DOF2    <---------AHL20(2)  -   cttgtgctttttcaatcctctcacgcaaaaaagcctcttgatccatctttttcttggtctagtctttgttatgggtctttgttttattggcatgaagatt  22065200                                                                                                xxxxx                                                                                             ------->TEIL                                                                                             <xxxxxxx                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                            <--------                                                                                            <--------          <---------TOE2(3)            <---------AHL20(2)                                 <---------ANAC58         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                            <---------ANAC46 ------>GT1   <---------GLK1(1)  <---------TOE1(3)                                    <---------ARR14(2) ------CBFxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           <------------CBF<---------ANAC58 xxxxxxxxsmallRNA(i2)            <---------TOE2(3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -----------TBPxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ANAC58    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -YAB1  ---------->DOF2   <-----------------AGL1           <---------CCA1(2)       <---------ANAC46 -------->AHL20(2)     ----------->HVH21      <---------ANAC58 <----------DOF2    <---------LBD16   <   gtttatatagtaaaggaaatgtgctatgacccattagggttttaatttccttgttggactcatttcttttagataacattgaatttcggatagcgtatct  22065300                       <------------CBF                      --------->ATHB12                     <---------YAB1                    ------->MYC3        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <---------TOE1(2)                                                                      <-----       ------>ZmHOX2a(1)<---------WOX13(1)                                                     xxxxxx xxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                          xxxxxxxxxxx xxxxxxxxxxxxxsmallRNA(si3)----------->GT1                                               xxxxxxxxxxxx --ARR14(2)         <-------MYC3                                                       <------------- ->ARR14(2)       ------->TEIL                                                         ============== ----ARR10     --------->ANAC46                                --------->YAB1          -------------- --ARR11(1)    --------->ANAC58                       <---------TOE2(3)             <-----------GT1 ->GLK1(2)     --------->ANAC58                      ---------->DOF2          <---------AHL20(1) -ARR14(1)  --------->REM1(2)                       <---------AHL20(2)        --------->AHL20(1) -CCA1(2)<---------ANAC46  <---------ANAC46    <---------YAB1<------------CBF --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------DAG2  --------->AHL20(2) <---------ARR11(3)    -   attccactcctacgtgtacgcatgtgattgagtataaaacgataaccttttgatttaaagataaattgtaatctaatctatatattataccattagagga  22065400                                                                                        <------------                                                                                        -------------                                                                                        --------->TOE1(3)                                                                                        --------->TOE2(3)      ----------->GT1                                                                  --------------  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                <------------- -ZmHOX2a(1)           ---------->DOF2                                                 <------------- xxxxxxxxxx>smallRNA(si3)                                                              <------------- xxxxxxxxx>smallRNA(se3)                                                        <------ZmHOX2a(1) xxxxxxxxxxx>smallRNA(si3)    ------->MYC3                               <---------AHL20(2)       --- --AGL15        ----------->GT1                                         <---------YAB1 <------------- ==================================================================================================== ->AGL15 ---------->DOF2      <-------MYC3        <----------ID1     <---------AHL20(2)-------------- --------->DOF2<---------TOE2(3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------AHL20(2)       <----   tgcaaagaccgaaaatcgaggtaataaaagcacatgaaaacttgaggcaaataagacaaaatatgagttatatttttatttaggagattaccttaatagg  22065500                                                                             <---------AHL20(2)                                                                             --------->AHL20(2)                                                                             <---------ICU4                                                                         <---------AHL20(2)                                                                         --------->AHL20(2)                                                                         <---------YAB1                                                          <---------YAB1<---------AHL20(1)                           <---------ICU4                <---------AHL20(2) --------->ICU4 ---AGL15                <---------AHL20(2)              <---------AHL20(1) <---------YAB1 -->AGL15                <---------AHL20(1)    <---------AHL20(2)       --------->AHL20(1) --->AGL1               --------->YAB1        <---------YAB1            --------->AHL20(2) ----AGL3              <---------YAB1      <---------AHL20(2)          --------->YAB1 ----AG             <---------AHL20(2)    --------->ARR11(3)          <---------YAB1 ----AGL1   <---------TOE2(3)        ----------->GT1   --------->ICU4<---------AHL20(2) -------->GT1       --------->AHL20(2)    <---------ARR11(3)       <---------AHL20(2) ----AGL2  ---------->DOF2--------->ICU4  <---------AHL20(1)       --------->AHL20(2) ====MADS_MADS  <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------AHL20(2)         <x --->AG--------->ZAT6--------->YAB1<---------ANAC46    <---------YAB1--------->AHL20(2)  --------->At5g28300 --ZmHOX2a(1)----------->GT1  <---------AHL20(2)    <---------YAB1--------->YAB1        ----------->GT1   aagaaaatcacactaaagttaatttataatatttatagagtgtatatatttattgttattattttttatattaatataattaatacaaaacagtaaaata  22065600  Previous    Next  AGI:  At1g59930.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G59920.1); similar to putative MADS-box transcription factor [Arabidopsis lyrata] (GB:AAO42467.1); contains domain PTHR11945 (PTHR11945); contains domain PTHR11945:SF14 (PTHR11945:SF14) Range:  from: 22064748    to: 22065146    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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