Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   <---------ANAC58                                --------->AHL20(2)                                   <---------ANAC58                           <---------MYB59                                 <-----------GT1                            --------->MYB52(1) ---------GT1                ------->TEIL        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    ------>MYB46(1) -------AHL20(2)     <---------------AtSPL3     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      ------>MYB83 --YAB1              <---------------AtSPL8     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <-----------GT1<   ttacataagttatattaagcggtttagtacgaatttttcgtgccaaattgttcgccttaacatttgtataattcaaaataccgaattaaaccaaatgttt  22047100                       ==============================================================================                       <---------------AGL15                                                  <------                <---------------AtSPL8                                                        -------             <---------CCA1(1)                      --------->YAB1                      <---------YAB1             <---------RVE1(1)                      <---------ICU4                    --------->YAB1            <---------ARR11(3)                   --------->YAB1                      <---------YAB1            --------->ARR11(3)                  <---------AHL20(2)                 <---------ICU4  --            <---------AHL20(1)                  --------->AHL20(2)                 --------->YAB1  <-          <---------TOE2(3)         <-----------GT1--------->ICU4                 --------->ICU4 <---          ----------->ARR10   ----------->GT1  --------->AHL20(2)                 <---------YAB1 ----       <---------MYB52(1)   ---------->DOF2<---------AHL20(2)           --------->TOE2(3)     -------   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->AHL20(2)           --------->TOE1(3)    -------- ---------YAB1  --------------->AtSPL8     <---------AHL20(1)          --------->At4g35610   --------   ttctgattcgttaagatatttgtaccaaaaaaaagaaataaccattttatttaataatcactaaaaaaacataagcttaaacttattattataaaaaatc  22047200                   --------------->AGL15   <---------AHL20(2)   --------->AHL20(2) ==================================MADS_MADS                          <---------------AGL15 ---ARR11(3)       <---------------AGL15                             <-----------------AGL1 -->ARR11(3)      ----------------->AGL3                       <---------AHL20(2)   --------->GLK1(1) ------->AHL20(2) ----------------->AGL2               ---------->DOF2--------------->AGL15 --------AHL20(2) <-----------------AGL3           ---------->DOF2   <---------ANAC55(2)    <-------- -------DOF2------>MYB46(1)                <---------ANAC58    --------->AHL20(2)   <---------GLK1(1) ----->TOE2(3)    ====================================================================MADS_MADS -->GLK1(2) ------>MYB83    <------ZmHOX2a(1) <---------WRKY18(1)   <-------TEIL --------->ANAC58 ->RVE1(1)<---------MYB59 ----------->GT1<-----------GT1 ----------->GT1--------->AHL20(2)  <-------- ->CCA1(1)--------->TOE2(3)----------->GT1 <---------ANAC58   --------->YAB1     --------->ANAC58   tttaattaaaaacctaatctactataaataggaaaattcaatttttcttgaccaaaagaaagtataaaaatacataaaatggcaagaaatctcatatgtt  22047300                                                                               --------->RVE1(1)                                                                              --------->GLK1(2)      ---------->DOF2                                                         --------->ARR11(3)     --------->LBD16          --------->TOE2(3)                           <---------MYB59<---------YAB1    --------->LBD16     <---------YAB1<---------YAB1                   <-----------GT1 --------->YAB1 -TOE2(2)             <------ZmHOX2a(1)                    <---------GLK1(1)  <---------ARR11(3) -TOE1(2)       ----------->HVH21   <---------ICU4         --------->GLK1(1) <---------GLK1(2)   ttaatcccgaaagtataggtgataggatgataccctaattttgactgtaagaaattaggggaaatccattttgttaccaaaatctcttatcatgtttcaa  22047400                                 <---------YAB1                               ----------->GT1                   --------->ANAC58                                                             -----         <---------AtLEC2  <---------ARR11(3)                                                  <<<<<<        <-------TEIL       <---------GLK1(2)                         <---------TOE1(2)         *TSS   ----------->TBP --------->ANAC46                           --------->ARR11(3)               <<<<<<   --------->AHL20(2)      --------->ARR11(3)                 <---------ARR11(3)           ---------- <----------DOF2   --------->ANAC58      ----------->RAV1(1) <---------CCA1(2)       --------->ZAT14 --------->TOE2(3) --------->AtLEC2   <-----------GT1    --------->AHL20(2)      --------->ANAC46   ttactttaaatgcatgaatacatgccaaagattttgttattaacaacacaaacacttgattatatatctccttggtataatatacagaacagacacaatc  22047500      ------>ZmHOX2a(1)                ---------->DOF2     <---------ALFIN1              <---------LBD16        <<<<<<<<<MYB2                        ------   <---------ATERF1(1)            <---------ANAC58 <----------DOF2                             <----- ---->YAB1                        <---------ANAC58 <---------DAG2                              <----- <<<ARR2                          <---------ANAC46<----------DOF2                              ------ <<<ARR1                      <-------GAMYB <----------DOF2                                   <------ -->CBF  ------>ZmHOX2a(1)   <-----------RAV1(1)---------->ID1                                <------   ttaggctcctccttctctcgctctcttccctctgttgctcggaaagctttggcctttttggttttcttatggctaattctcttctcaaaactattcgtat  22047600                                                                                 <---------ARR11(1)                                                                                <---------CCA1(2)                                           --------->ANAC58                   <---------ANAC58                                <------ZmHOX2a(2)                             <---------ANAC55(2)                                --------->CCA1(2)                             --------->ANAC55(2)                               --------->ARR11(3)                             <---------ANAC58 ->TEIL   <---------TOE2(3)    --------->AGP1                              --------->ARR11(1)       < ----ARR11(1)                 --------->GLK1(1)                            --------->ARR14(2) ------- ----ARR14(2)                 <---------GLK1(1)                            <---------GLK1(2)  ------>NtERF2 --->ARR14(2)    <---------ICU4<---------ARR11(3) <----------DOF2          <---------ARR14(2)-------- ---CCA1(2)      <---------AHL20(2)        --------->ANAC58              ----------->ARR10   <------- ---ARR14(1)    --------->AHL20(2)  --------->ANAC46          ---------->ID1 <-------TEIL   <--------   ctgagagagattgagataataaatatagagagagatccaaaccagaagcaatctttttttgtttgtctctctgtgaagattcgtatcatttttctccggc  22047700               <---------ALFIN1             <------ZmHOX2a(2)            --------->ARR14(2)            <---------ARR14(2)        <---------RAP2.3(1)        <---------ERF1        <---------ORA47(2)        <---------DEAR4(2)        <---------ATERF1(1)        ------>NtERF2       <---------RAP2.3(2)       <---------RAP2.3(3)       <---------RRTF1(3)       <---------DEAR3(1)       --------->DEAR3(1)      <---------ABI4(1)     ------->GAMYB                               <-----------GT1     <---------RAP2.3(1)                        <-----------GT1                            <---------  --------->MYB52(1)                       <------MYB83                                ---------->ID1 ---------MYB52(2)                         <---------MYB46(3)                   <------MYB83       -- -->LBD16  --------->GLK1(1)               <------MYB46(1)                      <------MYB46(1) <---- ->ANAC46<------NtERF2                 <-----------RAV1(1)                     --------->MYB59------- --ETT(1)--------->ATERF1(1)           <---------YAB1     <----------DOF2    --------------------->WRI1 -LBD16<---------ANAC46              --------->YAB1       --------------------->WRI1  <-----------GT1   aaactaacggcggcgatccactcttctctatagcttctattatgttggttttatcttcttctttggaagaaatgaacaagtttggttttttcgctttcat  22047800                                                                                              -------                                                                                ------>ZmHOX2a(2)                                                                               --------->CCA1(2)                                                                               <------ZmHOX2a(2)                  <---------TOE1(3)                                           --------->ARR14(2)                  <---------TOE2(3)                                           --------->ARR11(3)           <-----------------AGL2      --------->GLK1(2)                      <---------ARR11(3) -DOF2------>ZmHOX2a(2)        <---------AHL20(2)                             <---------AGP1--------- ----->TEIL<-----------------AGL3      --------->ARR11(3)                     --------->AGP1<-------- -----YAB1 ----------------->AGL3  --------->YAB1                             <---------ARR14(2) -->YAB1--------->LBD16----------->GT1 <---------ARR11(3)                   ----------->ARR10<-------GAMYB   gaatgtgatccggtctatataaggtttgtatatataatcaaaatctagtttttgatttttgtttcgattttttggcgatagatctggtttgtgtttgttg  22047900                                                                  <------MYB46(1)                                                     <---------ZAT18<---------REM1(1)                                                 <---------LBD16  <------MYB83------->TEIL --->ID1                                 <---------ANAC58         <---------ANAC46                  < >MYB52(2)                               <---------ANAC46        --------->MYB111(2)            <---- -MYB46(3)                               <---------ANAC58        --------->MYB46(2)   --------->CCA1(2)   tttaagagagagggaagtttttgaatttgtgattttaaacttggcttgttttcagggtacttagagtttggtgaagcttgaatctaagagatgaagaggg  22048000  Previous    Next  AGI:  At1g59890.1    Description:  paired amphipathic helix repeat-containing protein. similar to paired amphipathic helix repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G70060.1); similar to ATSIN3/SIN3 (Arabidopsis thaliana sin3 homolog) [Arabidopsis thaliana] (TAIR:AT1G24190.1); similar to paired amphipathic helix repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G10450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40976.1); similar to putative histone deacetylase complex, SIN3 component [Physcomitrella patens subsp. patens] (GB:EDQ60631.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14871.1); contains InterPro domain Hist Range:  from: 22047495    to: 22054726    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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