Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                  ---                                                                                                  <--                                                          <---------AHL20(2)                     <---                                                         --------->AHL20(2)                    <-----          <---------YAB1                              <---------ICU4                           ------  <---------ARR14(2)                                  --------->ATHB12                      <--------  --------->ARR14(2)                       <---------TOE1(3)    <---------YAB1             --------->ICU4 <---------CCA1(2)                         <---------TOE2(3)--------->ARR11(3)        ----------->GT1 ------->YAB1    <----------ID1   <------ZmHOX2a(1)  <---------YAB1 <---------ICU4    --------->HSFB2a(2) -------YAB1---------->DOF2     <---------ANAC46     --------->ICU4<---------YAB1     <---------HSFB2a(2)   atcatatccattatcaaagaagacaaaatcaatggaggataagttaatgttcttcatgattaaatcttgataattgtataacatggttctgtaaaaatta  22043900                                                        <---------------AGL15                                                        --------------->AGL15                                                       ----------------->AGL3     --------->ANAC46                      --------->AHL20(2) -------->ANAC46      ----------->GT1      ---------->DOF2 ------>YAB1         --------->DAG2        <---------AHL20(2) ---------GT1       ---------->DOF2       <---------ATHB12 ------YAB1      --------->YAB1      --------->TOE2(3) ----------------->AGL2 ----ICU4       <---------YAB1--------->YAB1--------->WOX13(1)    ---------->DOF2       --------->MYB52(1) --->YAB1      <---------ARR11(3) <---------GLK1(1)    <-----------------AGL2      ------->GAMYB -ICU4         --------->ARR11(3) --------->GLK1(1)    <-----------------AGL3     <----------ID1   tcacaacacaacaccaatatcataaagtttaatgagaaatctcaataaatcagtttttctaaatatagaaaagtctatcttacaacgacaaaacgatttt  22044000                                                                   <-----------GT1                                        ---------->DOF2           --------->AHL20(2)               --                                    ------>MYB46(1)               <---------AHL20(2)               --                                    ------>MYB83           <-----------GT1--------->ANAC58       <---                          --------->TOE1(3)           --------->YAB1  <---------ICU4             ----                --------->TOE2(3)   -------->P        --------->AHL20(2)  --------->ANAC58       ----               <---------ANAC55(2) ------>ZmHOX2a(1) <---------ATHB12 --------->YAB1            -----         <---------AHL20(2)------>ZmHOX2a(1)       --------->WOX13(1)<---------ATHB12         <------        --------->AHL20(2)--------->TOE2(3)    ------>ZmHOX2a(1) --------->AHL20(2)           -------   gaattttggattaaatcacctaaaatttccttaaatcctaccaaaagtcctcccaatcaaatttccatttaatcatacccaaatgtttaggccaatacac  22044100     --------->ARR11(3)     <---------ARR11(3)    <---------CCA1(2) ---->MYB83 ---->MYB46(1) ------ALFIN1                                            --------->AHL20(2) ----->AtMYB61                                          <---------AHL20(1) ----->DEAR3(1)                       ------>ZmHOX2a(1) --------->AHL20(1) ---->ANAC46 --------->ATHB12         ================HOX2a_HOX2a                                  <- -----GT1    <---------ICU4          --------->TOE2(3)  <---------ARR11(3)              <---------YAB1 -->ANAC46  <---------YAB1  <---------ANAC46   ------>ZmHOX2a(2)          <---------At4g35610 <------   caccctatatcttgatcattgcataatatggtttggattcctaaattgatccgttcaaaatatttagacccttgtcatcttatatagcatatgatataac  22044200                                                                                                 <xxx                                                                                                 <xxx                                                                                                 <xxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                               <-----                                                                                               <xxxxx                                                                                  <---------ANAC46                                                                              <---------SPL7  <------                                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                             <---------ANAC58 <xxxxxx                                                                             <---------ANAC58 <xxxxxx                                                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                   <---------AHL20(1)        <xxxxxxx                                                                   --------->AHL20(2)        <xxxxxxx                                    ----------->RAV1(2)          <---------ARR11(3)     <xxxxxxxxxxxx                           <---------YAB1                        --------->ARR11(3)<---------HSFB2a(2)                         --------->AHL20(2)                      <---------AHL20(1)--------->HSFB2a(2)                         <---------AHL20(2)                      --------->AHL20(1)--------->LBD16<-- ---------DOF2           --------->ATHB51                     --------->AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(s) -----GT1       <------NtERF2  <---------YAB1    <------ZmHOX2a(1) --------->AHL20(1) <xxxxxxxxxxxxxx   cctttcttcttactgggcctcgatgaattatttatgaaacctggcccattaggaatttgaagaaaaaaatattttaggggcgttccgagaattgaactcg  22044300                                        --------->ANAC58                                        ------->GAMYB                                        --------->ANAC58                                      --------->MYB52(1)                                      ---------->DOF2                                    <---------MYB59                                    --------->AtMYB61                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                <xxxxxxxxxxxxxxxxsmallRNA(se3)                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                <xxxxxxxxxxxxxxxxsmallRNA(si3)                                <xxxxxxxxxxxxxxxxsmallRNA(i)                               <xxxxxxxxxxxxxxxxxsmallRNA(si3)                               <xxxxxxxxxxxxxxxxsmallRNA(i)                               <xxxxxxxxxxxxxxxxxsmallRNA(se3)                              <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                             <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            --------->ZAT6    <---------MYB52(1)                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                        <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                      <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <xxxxxxxxxxxxxxxxsmallRNA(fl3)                    <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <xxxxxxxxxxxxxxxxxsmallRNA(se3)                  <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <xxxxxxxxxxxxxxxxsmallRNA(fl3)                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                  <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <xxxxxxxxxxxxxxxxxsmallRNA(si3)                  <xxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxsmallRNA(fl3) *TSS         --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <---------ALFIN1<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->ANAC58<-----------ARR10------>MYB83     --------->ANAC58--------->GLK1(2)------>MYB46(1) xxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                           --------->AHL20(2) xxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        <---------AHL20(2) xxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       --------->AHL20(2) xxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                    <---------YAB1 xxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   --------->AHL20(2) xxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <---------AHL20(2) xxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <---------AHL20(1) ----LBD16       <xxxxxxxxxxxxxxxxsmallRNA(se3)<---------MYB46(3)             --------->AHL20(1) xxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               --------->AHL20(2) ---LBD16--------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <---------AHL20(2) xxsmallRNA(l2)  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <-----------TBP         <- xxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           ----------->TBP <---------AHL20(2) xxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           --------->AHL20(2)        -- xxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------ARR11(3)         <- xxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <---------AHL20(1)         -- xxxxxxxxxsmallRNA(se3)--------->YAB1--------->MYB55(1)                 --------->AHL20(1)    ------- -------PCF5     <xxxxxxxxxxxxxxxxsmallRNA(s)<-------GAMYB<-----------RAV1(1)<---------AHL20(2)   <-- xxxxxxxxxsmallRNA(s2)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     ------------>CBF <---------YAB1---   ggacctctcgcaccctaagcgagaatcataccactagaccaaacgcccgttgttgaacatatgttggataacaatatatatatattattatataatttca  22044400                                                                   --------->ATHB12                                                     <---------YAB1<---------AHL20(2)                                                    <---------ARR11(3)                                                    --------->ARR11(3)     <---------------AGL15                         --------->CCA1(1)     --------------->AGL15                     --------->AHL20(2) --------->ICU4    <-----------------AGL1                    --------->YAB1   --------->AHL20(2)    <-----------------AGL2                    --------->AHL20(2)  --------->AHL20(2) --------ICU4                              --------->YAB1     --------->ARR11(3) ------->YAB1                             <---------YAB1      <---------AHL20(1) -------ATHB1                           --------->YAB1--------->YAB1           <---------AHL20(2) ------->ATHB12                 --------->AtLEC2   --------->RVE1(1)  --------->YAB1 ----->CBF            <---------YAB1   <---------AHL20(2)     <---------ARR11(3) -------ATHB12     --------->AHL20(2)  --------->AHL20(2)     --------->AHL20(1)            --------- ------>ICU4       <---------ATHB51   --------->AHL20(2)     --------->YAB1   --------->AHL20(2)   atgatttcttattttggccaaattattctagttaatgcaaatttataataaaaatatcatcaaaaatatttattagaatattaaatcgaatcaaatgtaa  22044500                                                             <---------------AGL15                         ------>MYB83                        <----------DOF2                         <---------TOE2(2)                   --------------->AGL15                         ------>MYB46(1)                     <---------DAG2                         <---------TOE1(2)                  =========================================         ------->GAMYB --------->TOE1(2)                    <-----------------AGL3      <-----------GT1  --------->TOE2(2)                  <-----------GT1                        <---   --------->TOE2(3)  --------->DEAR3(2)            --------->YAB1                    <---------MYB52(1)   --------->YAB1    ------->TEIL              <---------ARR11(3)                   ----------->GT1 -->GT1 --------->MYB46(3)         --------->ICU4--------->YAB1           --------->ZAT6    <--------   aacaatgttaaccatctgatttgaacctacgtttgtaattctcactctatatcatcaaaataactttatttagataacacttcaactcgttaattatcca  22044600                                 --------->YAB1                        <---------AHL20(2)                       --------->AHL20(2)                      <---------YAB1                    --------------->AGL15             <-----------GT1      <------ZmHOX2a(2)--------->YAB1  ----------->HVH21--------->ZAT6 ===================================MADS_MADS  --------->ARR11(3) ------MYB52(1)     <---------------AGL15      <---------ARR11(3) ---GT1     <-----------GT1     <---------ATHB12  <----------DOF2                          <---------ZAT6   ttatgtagatcaaataacttaactattatatgaaatcatacatgaccaagttctttttacactaggtctatatagaaaacaatgtgagatttagtattat  22044700                                                                                             --------                                                                                             <-------                                                                                            ---------                                                                                            <--------                                                                                          <---------ICU4                                                                                          --------->YAB1                                                                                         <---------ATHB12                      <-----------GT1                                                 <---------AHL20(2)                  <----------DOF2                         --------->AHL20(2)         --------->AHL20(2)      <---------AHL20(1)                                  --------->AHL20(1)     <---------ARR11(3)      --------->AHL20(1)                                  <---------AHL20(2)     --------->ARR11(3)      --------->AHL20(2)                                 --------->AHL20(2)      <---------AHL20(2)      <---------AHL20(2)     <---------YAB1       ----------->GT1                --------->AHL20(2)     --------->AHL20(2)     --------->TOE2(3)     --------->YAB1                 <---------AHL20(1)     <---------AHL20(2) --------->ANAC46         <---------YAB1      ------->TEIL--------->AHL20(1) <   gcaaaaaataaattgagtctctttatacatcatcaatagaataacatctatatgataaaaaaaattgtatgaacatttaccaatatattaaatcatcatt  22044800  Previous    Next  AGI:  At1g59880.1    Description:  pre-tRNA. tRNA-Pro (anticodon: AGG) Range:  from: 22044277    to: 22044348    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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