Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->YAB1                                                    <---------AHL20(2)             <-------TEIL                        <-----------HVH21        <---------AHL20(1)             --------->ATHB12                 --------->AHL20(2)      <------MYB83                          <---------YAB1                 <---------AHL20(2)      ----------->GT1                       --------->ICU4      <---------At4g35610                <------MYB46(1)                     --------->YAB1   <-------TEIL--------->YAB1 --------->YAB1    --------->AHL20(2)           <---------ICU4    <----- <---------GLK1(2)<---------AHL20(2)    --------->MYB59                    --------->ARR11(3) <------ --ICU4        --------->TOE2(3)     ------->TEIL--------->AHL20(1)       --------->YAB1    ------->TEIL   acagattcatatgacaatattaattttgtcactcatatgaatttggttaaatatataatctaatttgaaaatacaaaaatcatgattcatgatgcacctt  21982600                                 <-----------GT1                              --------->YAB1                              <---------ICU4                             <---------AHL20(2)                             --------->AHL20(2)                             <---------ATHB51       --------->AHL20(2)     --------->ANAC46        --------->ICU4         --------->YAB1     --------->ANAC55(2)   --------->YAB1          <---------YAB1 ---------->DOF2 -----DOF2           ----------->GT1           <----------DOF2 <---------HSFB2a(2)         ---------- ---DAG2  --------->ICU4 --------->AHL20(2)<---------CCA1(2)   --------->HSFB2a(2)       ---------->DOF2   tcaattcacataatgttgaaatacagaaaaaataattactctctcatttctttataatataagttttagaaagaaaccaaaaattgtctcataaagataa  21982700                                                                                 <---------AHL20(2)                                                                                --------->ARR11(3)                  <-----------GT1                                               <---------ARR11(3)                 <---------AHL20(2)                                             --------->AHL20(2)                --------->AHL20(2)                                              <---------AHL20(2)            --------->AHL20(2)                 --------->AHL20(2)    --------->AHL20(2)            <---------AHL20(2)                 <---------AHL20(2) <---------AHL20(2)    <---------RVE1(1)                      <---------AHL20(2)    --------->AHL20(2)              ----   <---------ARR11(3)                      --------->AHL20(2)    --------->ICU4 --------->AHL20(1)   <---------GLK1(2)                <-------GAMYB         <---------ATHB12      <---------AHL20(1)   --------->ARR11(3)             <---------TOE2(3)   <---------MYB52(2)   --------->ANAC58      <--- ->GT1<---------AHL20(2) ------>ZmHOX2a(1)--------->AHL20(2) ------->TEIL  --------->ANAC58----------   atgtagatttttttttaattttatctcctattaactagggttgaattaataaaacaactaatgaatatttattaaacacgaatatatttgtagtagtaaa  21982800                                                                                                  <--                                                                                                  ---                                                                                      -------->HAHB4                                                                                      --------->YAB1                                                                                      <---------ICU4                                                                                     <---------ATHB51                                                                          ---------->DOF2       -----                                                                         <---------ATHB12  <---------ANAC58   --------->TOE2(3)                  <---------ZAT18               --------->ANAC46 --------->ICU4 ----->AHL20(2)                       <---------ZAT14         --------->At4g35610<---------MYB52(1) ------AHL20(2)  ---------->DOF2      --------->ZAT14     --------->MYB52(1)   ----------->GT1  <---- ->GT1       ------->TEIL             --------->ZAT18     <-----------GT1--------->AHL20(2)<---------ANAC58   aaaattcttaatatgtatgcaaagtctaaaaacatacaagttcactaatctctactaaattaacagctaaacccaataaatccgttaattatggctagtt  21982900                                                                        <------MYB83             ----                                                                        ----------->GT1       ------>NtERF2                                                                     <-------GAMYB            -------                                                                    --------->MYB55(2)       --------                                                                    <---------MYB46(3)       <-------                                      <---------TOE2(3)            <---------AtMYB61         --------                        <----------DOF2                        <---------ANAC58              -------- -------ANAC46       --------->ARR11(3)               --------->ANAC58  <------MYB46(1)      -------- -------->GT1        <---------ARR11(3) <------ZmHOX2a(1)      <---------ANAC58              -------- ---->ZAT14      ---------->DOF2      <---------TOE1(3)        <---------ANAC46              -------- -----ZAT14 ---------->DOF2    ---------->DOF2        --------->ANAC58<--------P      ---------->DOF2   tagtgaatttttctcaaagaaaagctcttttttcaaagttaaggagactagagagcaagtcatttgcttgtggttggaaacaaaaacccaaagcgacgac  21983000                                                                         <---------MYB59                                                                         ------->GAMYB                                                                         --------->AtMYB61                                                                 --------->At4g35610                                                                <---------DEAR3(2)                                                               --------->ETT(1)                                                               <<<<<<<<<<DREB1A  --------->YAB1                                               <<<<<<<<<<DREB2A  --------->AHL20(2)                                           <---------DEAR3(1)            <------- -------->CBF                                                  <---------RAP2.6(2)      <---------ANAC46 ---->RAV1(1)                                                 --------->RAP2.6(3)     <---------ANAC46 ->bZIP60(2)                                                 <-----------HVH21        --------->ALFIN1 --bZIP60(1)                            --------->ANAC46  <---------ANAC58       --------->MYB52(1) ->bZIP60(1)             ----------->GT1--------->ANAC58  <---------ANAC58 ------>MYB83 --------->ALFIN1 ->O2   --------->AHL20(2)<------ZmHOX2a(1)               <---------ANAC46 ------>MYB46(1)   -------- ->ANAC58            <------ZmHOX2a(1)  --------->ANAC58  --------->MYB52(2)    ----------->HVH21 ->ANAC58      ---------->DOF2  --------->DAG2    ---------->DOF2<------NtERF2  ----------->TGA1    < ->ANAC46 --------->AHL20(2)   ---------->DOF2   *TSS    <-------TEIL   --------->MYB46(3) --------->REM1(2)   acaattaaaaaaaaatataaagaggagaggagaaaaagaggcaagccatagccaaagggttcgtgtcggcttcaaccaaacactgacggtgtgtgtatac  21983100          --------->ANAC46                                                               <---------AHL20(2)          <---------ALFIN1                                                      <-----------GT1       <-------TEIL                             <---------ATHB12          ------>ZmHOX2a(1)  >>>>>>>> --ARR14(2)   <---------DAG2              <-----------GT1              ---------->ID1  <---------YAB1 ->ARR14(2)   <----------DOF2        <----------DOF2               <----------DOF2 --------->TOE2(3) ----------DOF2 <---------CCA1(2)<---------CCA1(2)--------->WOX13(1)   <-----------GT1<---------AHL20(1)   acctttacatacacacctttatctctctctctctcacatctttgttacaaatcaatcttctactgttttctttttcctcttcttacattattttttgaca  21983200                                                             ------>ZmHOX2a(2)                                                            <------ZmHOX2a(2)                                                           <---------ARR14(2)                                                           --------->ARR14(2)                                                  <---------ZAT18                                                --------->STY1(2)                  <-------TEIL                                                <---------STY1(2)              <---------TOE2(3)   --------->TOE2(3)                            --------->ZAT2               ---------->DOF2 --------->ICU4                                 <---------ZAT2    <---------MYB46(3)            <---- >WRKY18                <----------DOF2   ------->TEIL<----------DOF2    <---------TOE2(3)<---------YAB1   gcaattcttagtttctcttctatcccctttctgggttttgtttgaaccctagctcgctttggatccagtggttttaagttaaaggttcgatttttatttc  21983300                                                                          --------->CCA1(2)                                                                         <---------ARR14(2)                                                               ------>ZmHOX2a(2)                    <---------ARR14(2)                        <------ZmHOX2a(2)                    --------->ARR14(2)                       --------->ARR11(3)                  <------MYB46(1)                            --------->GLK1(2)               <---------ANAC46                              --------->ARR14(2)               <---------ANAC58                              <---------ARR11(3)<---------ZAT2               <---------ANAC58                              <---------ARR14(2)--------->At4g35610               <---------AtLEC2                 =====================HOX2a_HOX2a      <---------ANAC58                          ======================HOX2a_HOX2a      <---------ANAC46                    --------->DAG2     <---------AGP1    <---------At4g35610      <---------ANAC58  <---------At4g35610     <------ZmHOX2a(1)--------->ZAT14         ---------->ID1    <---------YAB1<------MYB83           ---------->DOF2    <------ZmHOX2a(1)  --------->ZAT2 -----LBD16  <---------YAB1       <-----------RAV1(1)<----------DOF2     --------->ARR14(2)     <----   tgggttttgcttgttttgcttggttctgcttagtaaatgttggaaaaggaggagactttagaggatctgtagtcagatttgagctgggtttgtcgatttt  21983400                  <---------KAN4(2) ----------->GT1       <---------YAB1       <------ZmHOX2a(2)       <---------ARR14(2)   --------->ARR11(3)      <---------AGP1 <----------DOF2                            ------>ZmHOX2a(2)  <------ZmHOX2a(1)  --------->GLK1(2)<---------MYB52(1)                         ------>ZmHOX2a(1)  =================================HOX2a_HOX2a      --------->ARR14(2)   <-----------GT1           <- -------GT1   <---------LBD16   <------ZmHOX2a(1)  <---------CCA1(2)<----------DOF2<---------ARR11(3)   actaggattttgattttggggataatctagatcaggaatcgttactttgtttcatatccaaaattcaactctttttctcgttcctgatctaaaaatcgtt  21983500  Previous    Next  AGI:  At1g59750.1    Description:  ARF1 (AUXIN RESPONSE FACTOR 1); transcription factor. Identical to Auxin response factor 1 (ARF1) [Arabidopsis Thaliana] (GB:Q8L7G0;GB:O23664); similar to ARF11 (AUXIN RESPONSE FACTOR 11), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46530.3); similar to ARF11 (AUXIN RESPONSE FACTOR 11), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46530.1); similar to AUX/IAA protein; Transcriptional factor B3; Auxin response factor [Medicago truncatula] (GB:ABO80473.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46911.1); similar to auxin response factor 1 [Gossypium barbadense] (GB:AAZ81521.1); contains InterPro domain Tra Range:  from: 21983049    to: 21988078    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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